Lyun006983.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:84751-102620[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.074 1 10.0 0.1 1 21 71 91 71 92 0.95
2 30 0.66 9.3 7.0 5.2 1 23 98 120 98 120 0.98
3 30 0.11 1.5 9.5 0.8 1 23 148 170 148 170 0.98
4 30 0.12 1.7 9.4 1.8 1 23 175 197 175 197 0.97
5 30 0.0082 0.12 13.0 1.2 1 23 202 224 202 224 0.98
6 30 0.049 0.69 10.6 4.5 1 23 229 251 229 251 0.99
7 30 0.0057 0.081 13.5 0.7 1 23 256 278 256 278 0.98
8 30 0.0013 0.019 15.5 6.3 1 23 283 305 283 305 0.99
9 30 0.011 0.16 12.6 4.3 1 23 310 332 310 332 0.99
10 30 0.0063 0.089 13.4 0.4 1 23 337 359 337 359 0.98
11 30 0.011 0.16 12.6 4.2 1 23 364 386 364 386 0.99
12 30 0.031 0.43 11.2 1.3 1 23 391 413 391 413 0.98
13 30 1.5 21 5.9 5.0 1 23 489 511 489 511 0.98
14 30 2.8 40 5.1 0.7 1 23 546 568 546 568 0.94
15 30 0.00023 0.0033 17.9 0.6 1 23 573 595 573 595 0.98
16 30 0.52 7.3 7.4 0.0 1 21 784 804 784 805 0.95
17 30 0.0021 0.03 14.9 0.6 1 21 901 921 901 922 0.96
18 30 0.18 2.5 8.8 1.4 1 23 928 950 928 950 0.98
19 30 5.5e-05 0.00078 19.9 1.9 1 23 955 977 955 977 0.99
20 30 0.056 0.8 10.4 0.7 1 23 982 1004 982 1004 0.98
21 30 0.0016 0.023 15.3 1.2 1 23 1009 1031 1009 1031 0.98
22 30 0.0011 0.015 15.8 0.7 1 23 1036 1058 1036 1058 0.98
23 30 0.0044 0.062 13.9 1.0 1 22 1063 1084 1063 1085 0.90
24 30 0.00015 0.0021 18.5 0.7 1 23 1090 1112 1090 1112 0.99
25 30 5.7e-05 0.00081 19.8 1.9 1 23 1117 1139 1117 1139 0.98
26 30 0.11 1.6 9.4 0.4 1 23 1144 1166 1144 1166 0.98
27 30 0.0012 0.017 15.7 1.1 1 23 1171 1193 1171 1193 0.99
28 30 0.0016 0.023 15.3 1.3 1 23 1198 1220 1198 1220 0.99
29 30 0.0016 0.023 15.3 2.0 1 23 1225 1247 1225 1247 0.99
30 30 0.00037 0.0053 17.3 1.1 1 23 1252 1274 1252 1274 0.99

Sequence Information

Coding Sequence
atgTCTACAATGAATGTTGATTGTATTGAAAGTTGTGCAATCaaatctgaagtgattttaacagaaacgtttTCGTTTTGTGAACAATATGGAGATTATGCGGACACAGAACTAAAAACAGAGCTAGTAGATTATGCagaatcttttaaatataaGGAAGGAAATATTTCTGTAGAGGTCACGGGTGTACATGCTGCTCCGTTGCAAccatatttttgtaatgaatgtggCTTTATGACAGTGGAAAaagattctctaatagaacatttgaaaattgcaaaaactgttcaATATTCTTGTAAGGAGTGTAACTTTACAACCCAGTTTCAATGTTctgtaaaaaaacatttaagaattcaCAAAGGGGCAGATACTAAATATATTATTGAAGAATGTAAATTTCAGACGTCACAATGGAAAACCCCAAAAAGTGgtgacaaatatatttgtaatgaatgtaattatactacTTTAATCAAAACTTCTCTAAAAAGACatgttagaattcataaaaGGCCTaaatataactgtaaagaatgtgattatcaaACAGTATGTCAAAGTAATCTAAAGGCACATGGAAAAATTCATCCAGGTgtcaaatataattgtaaagaatgtgattataaaacaaaatggcaaggtaatctaaagaaacatgtcaaaattcatacaggtgaagaatataaatgtaaagaatgtgactataaaacaacgTGGCAAACTTGTCTAaaaaaacatatcaaaattcatacaggtgaagaatatgaatgtacagaatgtgattataaaacaacgtgGCAAAGTTCTCTAaagaatcatgtcaaaattcatacgggtgaagaatataaatgtaaagaatgtgactataaaacagtgcaaaaacATCATCTAAGGGAACATGTAAAAACTCATACGggtgaagaatataaatgtaaagaatgtgactataaaaccaCATGGCAAAGTTgtctaaagaaacatatcaaaattcatacaggtaataaatatgagtgtaaagaatgtgattataaaacagtatggcaaggtaatctaaagaaacatgtcaaaattcataccggtgaagaatataaatgtaaagaatgtgactataaaacaacaTGGCAAAGTTGTCTAaggaaacatatcaaaattcatacaggtgaagaatataaatgtaaagaatgtgattataaaacaatgtggCAAAGTTCTCTAaagaatcatgtcaaaattcatacgggtgaagaatataaatgtaaagaatATTATGGGGATAAAGAGCTAAAAACAGAACCAGTAGATTATGAAGACTCTTTCAAATgtaaggaagaaaatatttctgTACAGCAGCACACAGGCGTGCATGCTGCTCTGATGCTACAATTTTCCTATAATGAGTGTGACTATGACAATGGAAAATATTCTCTAGTAGAACacttgaaaattactaaaaatgttcaatattcttGTAAAGAGTGTAACTTTACAACCCAGTCACAATGTTCTGTAAAAAATCATTTCAGGATTCACAAAGGGTTAGATAATAGATATATTATTGAACAATGTAACTTCCAGATGTCGAACATTTTCTGTTTAACACGACAGTGGGAAACTCCAAAAAGTGGCAGcacatatatttgtaatgaatgtaattataccacattACCCAAAAGCTCTCAAAAAagtcatgtcaaaattcataaaggggctggatataagtgtaaagaatgtgactataaagcAGTGCGAAAaggtaatctaaaggaacacgtcaaaattcacacaggtgatgaatataagtctaaacattatgattataaaacagtgtggcaaagaaGTCGAAATCAACAtaacaaaattcacacaggtgacaaatattatgtaaagaatgtgatcaTAAAACAGTGTGGCGAAgtgatgaatataaatgtaaagaatgtgattataaaacagtgggGAAAAGTAATagttCCTATATATAGACAGACTACCGAAATTGACGCCATTTTGGCTCCAGAAAagggcgggaaatttgaattgaagTTAATtgTACAAAAGTTTCGTTATAAGCGTACCGGCACTGACGTCATCGACGCTAAGTTAATTACAGACGTTGACTTCACTCACATATATTTTAGTTCTACCATGGATGCtaactatattgaaaattgtgcaataaaatcagaagagaatttaacagaaacattttcgtTGTGTGGACAAAGTGAAGGTTATGGGGATGAAGAACTAAAAACAGAGCCAGTAGATTacgaagaatcttttaaatgtaaggaCGAAGGTATTTTTCTAGAGCAGGCAGGCGTACATGATGCTCGGATGCAACAATTTTCGTGTAGCGAGTGTGACTTTGTGACAGTGGAAGAAGATACTCTAATAGAACacttgaaaattacaaaaaatgttcaatattcttGTAAGGAGTGTAACTTTACAACACAGTTGCAATGTTCCATAAGGAAGCATTGCAGGATTCACAAAGAAGTGGATGATAAATATATTATCGAAGAATGTAAATTTCTGACATCACCGATTTTCTGTTTAACACCACAGTGGAAAACTCTAAAAAGTGgtgacaaatatatttgtaatgaatgtaattacactaaaGAATGCCATGATATAACAGCGTGGCAAAGTAGAGCAAAGGAACATGTAAACGTCCATAAAGGTGACAAATACAAGTGTAACAAATGTGGCCATAAAACAGTCCAATTAAATAACCTAAAAGAACATATCAACATTaatacaggtgataaatataaatgtaaagaatgtaactatGAAACTTTACGAAAAgatcgtctaaaggaacacgtcaaaattcatacaggggatgaatataaatgtacagaatgtgactttaaaacagtacgaaaagataatctaaaaaaacatgtcaaaattcatacaggtgacaaatatgagtgtcaagaatgtgattataaaacaacatgggATAgaaatctaaagcaacatatcaaaattcatacaggtgataattatcagtgtaaggaatgtgattataaaacagtttggaaaagtaatctaaggaaacatgtcaaaattcatacaggtgacaaatacgagtgtaaagaatgtgattataaaacagtgagaaaagatcgtctaaaggaacatgccagaattcatacaggtgacaaatatgtatgtaaagaatgtgactataaaacagtacgaaaaagtagtctaaaggagcatgacaaaattcatacaggtaatgaatacaaatgtaatgattgtggttataaaacagtgtggcaaagtaatctaaacaaacatatcaaaattcatacaggtgatgaatataaatgtaaagaatgcgactttaaaacagtacgaaaagataatctaaagaaacatgtccaaattcatacaggtgacaaatttgagtgtaaagaatgtgattatagaacagTATGGCAAAATAGTctgaaggaacatgtcaaaattcatacaggtaatgaatataagtgtaaagattgtgattataaaacagtttggcaaagtaatttaaacaaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacagtgcgaacagatcgtctaaaggaacatgtcagaattcatacaggtgacgaatataaatgtaaagaatgcgactataaaacagtgcggaaaaataGTCTATATGAACATGTCAAAAtgcatacaggtaatgaatataagtgcaaagattgtgattataaaacagtgtggcaaagtaATCTTAacaaacatatcaaaattcatataggtgataaatatagatataaagaatgtaattattaa
Protein Sequence
MSTMNVDCIESCAIKSEVILTETFSFCEQYGDYADTELKTELVDYAESFKYKEGNISVEVTGVHAAPLQPYFCNECGFMTVEKDSLIEHLKIAKTVQYSCKECNFTTQFQCSVKKHLRIHKGADTKYIIEECKFQTSQWKTPKSGDKYICNECNYTTLIKTSLKRHVRIHKRPKYNCKECDYQTVCQSNLKAHGKIHPGVKYNCKECDYKTKWQGNLKKHVKIHTGEEYKCKECDYKTTWQTCLKKHIKIHTGEEYECTECDYKTTWQSSLKNHVKIHTGEEYKCKECDYKTVQKHHLREHVKTHTGEEYKCKECDYKTTWQSCLKKHIKIHTGNKYECKECDYKTVWQGNLKKHVKIHTGEEYKCKECDYKTTWQSCLRKHIKIHTGEEYKCKECDYKTMWQSSLKNHVKIHTGEEYKCKEYYGDKELKTEPVDYEDSFKCKEENISVQQHTGVHAALMLQFSYNECDYDNGKYSLVEHLKITKNVQYSCKECNFTTQSQCSVKNHFRIHKGLDNRYIIEQCNFQMSNIFCLTRQWETPKSGSTYICNECNYTTLPKSSQKSHVKIHKGAGYKCKECDYKAVRKGNLKEHVKIHTGDEYKSKHYDYKTVWQRSRNQHNKIHTGDKYYVKNVIIKQCGEVMNINVKNVIIKQWGKVIVPIYRQTTEIDAILAPEKGGKFELKLIVQKFRYKRTGTDVIDAKLITDVDFTHIYFSSTMDANYIENCAIKSEENLTETFSLCGQSEGYGDEELKTEPVDYEESFKCKDEGIFLEQAGVHDARMQQFSCSECDFVTVEEDTLIEHLKITKNVQYSCKECNFTTQLQCSIRKHCRIHKEVDDKYIIEECKFLTSPIFCLTPQWKTLKSGDKYICNECNYTKECHDITAWQSRAKEHVNVHKGDKYKCNKCGHKTVQLNNLKEHININTGDKYKCKECNYETLRKDRLKEHVKIHTGDEYKCTECDFKTVRKDNLKKHVKIHTGDKYECQECDYKTTWDRNLKQHIKIHTGDNYQCKECDYKTVWKSNLRKHVKIHTGDKYECKECDYKTVRKDRLKEHARIHTGDKYVCKECDYKTVRKSSLKEHDKIHTGNEYKCNDCGYKTVWQSNLNKHIKIHTGDEYKCKECDFKTVRKDNLKKHVQIHTGDKFECKECDYRTVWQNSLKEHVKIHTGNEYKCKDCDYKTVWQSNLNKHVKIHTGDEYKCKDCDYKTVRTDRLKEHVRIHTGDEYKCKECDYKTVRKNSLYEHVKMHTGNEYKCKDCDYKTVWQSNLNKHIKIHIGDKYRYKECNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-