Lyun007071.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:2085580-2096163[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.72 10 6.9 0.0 1 21 67 87 67 88 0.94
2 26 0.56 7.9 7.3 0.4 5 23 154 172 153 172 0.96
3 26 1.6e-05 0.00022 21.6 1.0 1 23 177 199 177 199 0.98
4 26 0.12 1.7 9.4 1.6 1 23 204 226 204 226 0.97
5 26 0.00011 0.0015 19.0 1.4 1 23 231 253 231 253 0.99
6 26 0.0008 0.011 16.2 5.0 1 23 258 280 258 280 0.99
7 26 0.01 0.14 12.8 1.4 1 23 285 307 285 307 0.99
8 26 0.0008 0.011 16.2 1.9 1 23 312 334 312 334 0.99
9 26 0.00046 0.0066 17.0 1.2 1 23 339 361 339 361 0.99
10 26 0.00057 0.008 16.7 2.8 1 23 366 388 366 388 0.99
11 26 0.0015 0.021 15.4 2.1 1 23 420 442 420 442 0.98
12 26 0.066 0.94 10.2 3.3 1 23 447 469 447 469 0.99
13 26 0.00014 0.002 18.6 1.2 1 23 474 496 474 496 0.99
14 26 0.0083 0.12 13.0 1.9 1 23 501 523 501 523 0.99
15 26 0.0093 0.13 12.9 1.2 1 23 599 621 599 621 0.97
16 26 0.0018 0.026 15.1 4.2 1 23 626 648 626 648 0.97
17 26 7.8 1.1e+02 3.7 1.0 1 23 653 675 653 675 0.95
18 26 0.00031 0.0044 17.5 1.4 1 23 680 702 680 702 0.99
19 26 0.00018 0.0026 18.2 4.0 1 23 707 729 707 729 0.99
20 26 0.00011 0.0016 18.9 2.2 1 23 734 756 734 756 0.99
21 26 0.062 0.88 10.3 1.5 1 23 761 783 761 783 0.98
22 26 7.3e-05 0.001 19.5 0.8 1 23 788 810 788 810 0.99
23 26 0.00065 0.0092 16.5 2.2 1 23 815 837 815 837 0.99
24 26 0.16 2.3 9.0 1.7 1 23 842 864 842 864 0.98
25 26 0.0001 0.0014 19.1 1.4 1 23 869 891 869 891 0.98
26 26 0.021 0.3 11.7 1.1 1 23 896 918 896 918 0.99

Sequence Information

Coding Sequence
ATGGACGCCATATGTAATGAAAGTTACCCAATAAAATCAGAACTGATTGTACACGAAACATTTTCCTATTgtggaaaatatgaagATTATGGGAACGAAGAATTGAAAACAGAACCCATAGATTttgaagaatcttttaaatgcaaaaaagaAGATAATCTTGAAGAGCGCACCTCCCAATGTATATCCAAGCGTCAATATatgtgtaatgaatgtaattttattgcaaCAGTGAAGGATGCTCTAATAGAACATACGAAAGTTGCTAataatgttcaatatttttgtgtggaatgtaattttacaactCTGTTAGAATGTTCTATAAAGCAGCATTTCAGGATTCATAGCAGGGTTGGTTGTAAATATATCACTAAACAACATAATTGTGAGACGTCACAAATTTTCTCTTTAGCACCACACttgaaaacaaaaagtgatgATGAGTATATACgtaagaaatgtgattataaaacaccgcAGAAATGGAGTATGAAGAAACATGcgagaattcatactggtgagcAATATAAGTGTACCGAGTGTGATTATGAAACATCAAGGAAAAGTAGTCTAACAATACATATGACcatccatactggtgataaatataagtgtatccagtgtgattttaaaacaatacgaaaacaaagtctaaaggaacacctaaaaattcatactggtgatgaatataagtgtagcgagtgtaattataaaacagtacggaaagATACTCTAATGCAgcacataaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaatacacaaaCATGATCTTACGCAACATGtaagaattcatactggtgatcgatacaagtgtaaggaatgtggttttaaaacaatatggaaacgcagtctaaaggaacacatgaaaattcatactgatgataaatataagtgtaaggaatgtgactataaaacaatatataaatataaactagtgcaacacataaaaattcatactggtgatgaatataagtgtagggagtgtgattataaaacaatacagaaATATAATCTAGTGCAAcacgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaatacaaaaacatGATCTTATGCAACATGaaagaattcatactggtgaccaatataagtgtaaggaatgtaattataaatcatGGTGGAAACagtgtctaaaggaacatgtgaaaactCATACTAATGAGAAATATAATTGtgaagaatgtgactataaaacaatacggaaacatagtctaaaggaacatgttaaaattcatactggtaatgaatataagtgtaaggaatgtgattataaaacaatatggaaacataCTCTAACACAGCacctaaaaattcatactggtgatgaatataagtgtactgagtgtaattacaaaacagtaagaaaaggtactttaatgcaacacataaaaatccatactggtgatcaatacaagtgtaaggaatgtgattataaaacaatatggaaacgcagtctaaaggaacacatgaAAATGCATACTGATGATATATATAAGTTTTGCATAATGGAAGCCATATATAATAAAAGTTCCCCAATAAAATCAGAGGTGATTGTACACGAAACATTTTCCTATTgtggaaaatatgaagattatggGAACGAAGAATTGAAAACAGAAGCCCtaaattttgaagaatctaTTAAGGCGTCACAAATTTTCTCTTTAGCACCACCCTTGAAAACTCCAAAACATGGTGATAAGTATATAtgtaagaaatgtgattataaaacaccgcAGAAGTGGAGTATGAAGAAACATGAGCAAATTCATACTGGTGGGCAATATAAGTGTacagagtgtgattataaaacatctagGAAACATAGTCTAACAATACATAAGACAATTCATGTTGGTGATAAACATAAGTGTGGCgagtgtgattttaaaacaatatggaaacagagtctaaagggaCATGCGAAAATTCATACTAGTaatcaatataagtgtaatgaatgtgattataaaacaattaggaaacagagtctaaaggaacatgtaaaaattcatagtgatgatgaatataagtgcaaagagtgtaattataaaacaatacacaaaaaaaatctagtgcgacacataaaaattcatattggtgatcaatataagtgtaaagaatgtgattataaaacaatacagaaATATAGTCTTACACAAcacttaaaaattcatactggtgatgaatacatgtgtaacgaatgtgattttaaaacaatacgGAAACATATTCTAATAcaacacataaaaattcataccggtgatgaatataaatgtactgagtgtaattataaaacagtacggaagGATGCTCTAATGCAgcacataaaaattcatactggtgatgaatataagtgtaagcaatgtgattataaaacaatacaaaaatatttattaacgcaacatgtaaaaattcatactggtgataaatacaagtgtaaggaatgtgattataaaacaatatggaagaaCAGGCTAAACGAACATTTGAAAACTCATACtgatgaagaatataagtgtaaggagtgtgattataaaactatacggAAATATAATCTAATACaacatgcaaaaattcataccagtgatgaatataagtgtactcagtgtaattataaaacagtatggaaaggtACTCTAATGCGACACATAAAAATTCATAGTgttgatgaatataagtgtaagaaattTGATGTTAAGGCAGTGAACAGaggtaatttaaaaagtgaCAAATTATACAAATGA
Protein Sequence
MDAICNESYPIKSELIVHETFSYCGKYEDYGNEELKTEPIDFEESFKCKKEDNLEERTSQCISKRQYMCNECNFIATVKDALIEHTKVANNVQYFCVECNFTTLLECSIKQHFRIHSRVGCKYITKQHNCETSQIFSLAPHLKTKSDDEYIRKKCDYKTPQKWSMKKHARIHTGEQYKCTECDYETSRKSSLTIHMTIHTGDKYKCIQCDFKTIRKQSLKEHLKIHTGDEYKCSECNYKTVRKDTLMQHIKIHTGDEYKCKECDYKTIHKHDLTQHVRIHTGDRYKCKECGFKTIWKRSLKEHMKIHTDDKYKCKECDYKTIYKYKLVQHIKIHTGDEYKCRECDYKTIQKYNLVQHVKIHTGDEYKCKECDYKTIQKHDLMQHERIHTGDQYKCKECNYKSWWKQCLKEHVKTHTNEKYNCEECDYKTIRKHSLKEHVKIHTGNEYKCKECDYKTIWKHTLTQHLKIHTGDEYKCTECNYKTVRKGTLMQHIKIHTGDQYKCKECDYKTIWKRSLKEHMKMHTDDIYKFCIMEAIYNKSSPIKSEVIVHETFSYCGKYEDYGNEELKTEALNFEESIKASQIFSLAPPLKTPKHGDKYICKKCDYKTPQKWSMKKHEQIHTGGQYKCTECDYKTSRKHSLTIHKTIHVGDKHKCGECDFKTIWKQSLKGHAKIHTSNQYKCNECDYKTIRKQSLKEHVKIHSDDEYKCKECNYKTIHKKNLVRHIKIHIGDQYKCKECDYKTIQKYSLTQHLKIHTGDEYMCNECDFKTIRKHILIQHIKIHTGDEYKCTECNYKTVRKDALMQHIKIHTGDEYKCKQCDYKTIQKYLLTQHVKIHTGDKYKCKECDYKTIWKNRLNEHLKTHTDEEYKCKECDYKTIRKYNLIQHAKIHTSDEYKCTQCNYKTVWKGTLMRHIKIHSVDEYKCKKFDVKAVNRGNLKSDKLYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-