Lyun016648.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002264.1:3139864-3141795[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1 15 6.4 0.3 1 23 18 40 18 40 0.97 2 21 0.00025 0.0036 17.8 1.6 1 23 68 90 68 90 0.97 3 21 8.2e-05 0.0012 19.3 1.3 1 23 100 122 100 122 0.99 4 21 0.027 0.38 11.4 0.6 1 23 127 149 127 149 0.98 5 21 0.0035 0.05 14.2 2.9 1 23 154 176 154 176 0.98 6 21 2.1e-05 0.00029 21.2 2.0 1 23 181 203 181 203 0.99 7 21 0.033 0.46 11.2 0.7 1 23 208 230 208 230 0.98 8 21 0.0052 0.073 13.7 1.2 1 23 235 257 235 257 0.99 9 21 2.1e-05 0.00029 21.2 2.0 1 23 262 284 262 284 0.99 10 21 0.042 0.59 10.8 1.1 1 23 289 311 289 311 0.98 11 21 2.1e-05 0.00029 21.2 2.0 1 23 317 339 317 339 0.99 12 21 0.042 0.59 10.8 1.1 1 23 344 366 344 366 0.98 13 21 1.3e-05 0.00019 21.8 1.4 1 23 372 394 372 394 0.99 14 21 0.042 0.59 10.8 1.1 1 23 400 422 400 422 0.98 15 21 1.3e-05 0.00019 21.8 1.4 1 23 428 450 428 450 0.99 16 21 0.029 0.41 11.3 1.1 1 23 455 477 455 477 0.98 17 21 0.00079 0.011 16.2 1.2 1 23 483 505 483 505 0.99 18 21 1.3e-05 0.00019 21.8 1.4 1 23 510 532 510 532 0.99 19 21 0.0032 0.045 14.3 1.2 1 23 537 559 537 559 0.99 20 21 0.00023 0.0033 17.9 4.2 1 23 564 586 564 586 0.99 21 21 2.1e-05 0.00029 21.2 2.0 1 23 591 613 591 613 0.99
Sequence Information
- Coding Sequence
- ATGGAAAAGGATTATCAGATAGAacatttcgaaattattaaaaatgttcaatattcttGTGAGGAATGTAACTTTATAACACAGTTAGAATCTTCCATAAAagagcatttaaaaattcacaatgGAGTAGATGGTCAATATATTAcagaagaatgtaattttaagacgcCAGAGCTCAAAACTGCAAGAATTCGCAAtgaatacatttgtaatgaatgtacttataaaacatttgtgaaaagtaatctaaagagacacatcaaaattcataaaggtgatGATGTTGCCGGtcacaaatataagtgtaaagaatgtgactataaatcaataaggaaaaatcaactaaacgaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgtggataAGTAGtttaaaggaacacatcaaaattcatacaggcgatgaacataagtgtaaagcatgtgattataaaactgtgagaaaaaatcaactaaaggaacacattaaaattcatacaggtaatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaatgaatgtgattataaaacagtgtggaaaaatctaCTAAAAACACATGTCAacattcatacaggtgatgaatataagtgtacggaatgtgattataaaacggtgtggaaaaaacaactaaatacgcatatcaaaattcatacaggagatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaagtatTCTAAAGagacacatcaaaattcatacaggagatgaggaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaagtatTCTAAAGagacacatcaaaattcatacaggagatgaggaatataagtgtaaagaatgtgattataaaacagtgcggaaaaaacaactaaatgcacacatcaaaattcatacaggcgatgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaaagtatTCTAAAGagacacatcaaaattcatacaggagatgaggaatataagtgtaaagaatgtgattataaaacagtgcggaaaaaacaactaaatgcacacatcaaaattcatacatgtaatgaatataagtgtaaagactgtgattataaaacagtgtggaaaagtatTCTAAAGagacacatcaaaattcatacaggggatgatgaatataagtgtaaagaatgtgattataaaacagtgcggaaaaaacaaataaatgcacacgtcaaaattcatacatgtaatgaatataagtgtaaagaatgtgattataaaacagtgcggaaaaaacaactaaatgcacacatcaaaattcatacaggtaatgaatataaatgtaaagaatgtgattataaaactgtgtggaaatatcaactaaaggaacacatcaaaattcatacaggtaatgaatttaagtgtaaagaatgtgattataaaacagtgcacaaaaaacaactaaatacgcatatcaaaattcatacaggagatgaatataagtgtaaagaatgtgattataaaacagtgcggaaatatcaactaaaggaacacatcaaaattcatacatgtAATTAA
- Protein Sequence
- MEKDYQIEHFEIIKNVQYSCEECNFITQLESSIKEHLKIHNGVDGQYITEECNFKTPELKTARIRNEYICNECTYKTFVKSNLKRHIKIHKGDDVAGHKYKCKECDYKSIRKNQLNEHIKIHTGDEYKCKECNYKTVWISSLKEHIKIHTGDEHKCKACDYKTVRKNQLKEHIKIHTGNEYKCKECDYKTVRKYQLKEHIKIHTGDEYKCNECDYKTVWKNLLKTHVNIHTGDEYKCTECDYKTVWKKQLNTHIKIHTGDEYKCKECDYKTVRKYQLKEHIKIHTGDEYKCKECDYKTVWKSILKRHIKIHTGDEEYKCKECDYKTVRKYQLKEHIKIHTGDEYKCKECDYKTVWKSILKRHIKIHTGDEEYKCKECDYKTVRKKQLNAHIKIHTGDEEYKCKECDYKTVWKSILKRHIKIHTGDEEYKCKECDYKTVRKKQLNAHIKIHTCNEYKCKDCDYKTVWKSILKRHIKIHTGDDEYKCKECDYKTVRKKQINAHVKIHTCNEYKCKECDYKTVRKKQLNAHIKIHTGNEYKCKECDYKTVWKYQLKEHIKIHTGNEFKCKECDYKTVHKKQLNTHIKIHTGDEYKCKECDYKTVRKYQLKEHIKIHTCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -