Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000047.1:1655906-1658696[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 3.2e-06 4.6e-05 23.8 2.3 1 23 37 59 37 59 0.99

2 25 0.00043 0.0061 17.1 3.0 1 23 64 86 64 86 0.99

3 25 0.0029 0.04 14.5 2.1 2 23 92 113 91 113 0.97

4 25 0.0029 0.041 14.5 2.3 2 23 119 140 118 140 0.96

5 25 0.0084 0.12 13.0 3.9 2 23 146 167 145 167 0.97

6 25 9.3e-05 0.0013 19.2 1.7 2 23 173 194 172 194 0.98

7 25 0.0014 0.02 15.4 0.9 2 23 200 221 199 221 0.97

8 25 0.006 0.084 13.5 4.2 2 23 227 248 226 248 0.97

9 25 0.00055 0.0079 16.7 1.7 2 23 254 275 253 275 0.97

10 25 9e-05 0.0013 19.2 1.9 2 23 281 302 280 302 0.97

11 25 3.2e-06 4.6e-05 23.8 2.3 1 23 358 380 358 380 0.99

12 25 0.00043 0.0061 17.1 3.0 1 23 385 407 385 407 0.99

13 25 0.0029 0.04 14.5 2.1 2 23 413 434 412 434 0.97

14 25 0.0029 0.041 14.5 2.3 2 23 440 461 439 461 0.96

15 25 0.0025 0.036 14.7 3.9 2 23 467 488 466 488 0.97

16 25 9.3e-05 0.0013 19.2 1.7 2 23 494 515 493 515 0.98

17 25 0.0014 0.02 15.4 0.9 2 23 521 542 520 542 0.97

18 25 0.006 0.084 13.5 4.2 2 23 548 569 547 569 0.97

19 25 0.00017 0.0024 18.4 0.8 2 23 575 596 574 596 0.97

20 25 0.15 2.1 9.1 0.3 2 23 602 623 601 623 0.96

21 25 0.11 1.6 9.5 2.0 2 23 629 650 628 650 0.97

22 25 0.00072 0.01 16.4 0.2 2 23 656 677 655 677 0.97

23 25 0.00018 0.0025 18.3 0.3 2 23 683 704 682 704 0.97

24 25 0.032 0.45 11.2 4.7 2 23 710 731 709 731 0.97

25 25 0.027 0.38 11.4 0.3 2 23 737 758 736 758 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	3.2e-06	4.6e-05	23.8	2.3	1	23	37	59	37	59	0.99
2	25	0.00043	0.0061	17.1	3.0	1	23	64	86	64	86	0.99
3	25	0.0029	0.04	14.5	2.1	2	23	92	113	91	113	0.97
4	25	0.0029	0.041	14.5	2.3	2	23	119	140	118	140	0.96
5	25	0.0084	0.12	13.0	3.9	2	23	146	167	145	167	0.97
6	25	9.3e-05	0.0013	19.2	1.7	2	23	173	194	172	194	0.98
7	25	0.0014	0.02	15.4	0.9	2	23	200	221	199	221	0.97
8	25	0.006	0.084	13.5	4.2	2	23	227	248	226	248	0.97
9	25	0.00055	0.0079	16.7	1.7	2	23	254	275	253	275	0.97
10	25	9e-05	0.0013	19.2	1.9	2	23	281	302	280	302	0.97
11	25	3.2e-06	4.6e-05	23.8	2.3	1	23	358	380	358	380	0.99
12	25	0.00043	0.0061	17.1	3.0	1	23	385	407	385	407	0.99
13	25	0.0029	0.04	14.5	2.1	2	23	413	434	412	434	0.97
14	25	0.0029	0.041	14.5	2.3	2	23	440	461	439	461	0.96
15	25	0.0025	0.036	14.7	3.9	2	23	467	488	466	488	0.97
16	25	9.3e-05	0.0013	19.2	1.7	2	23	494	515	493	515	0.98
17	25	0.0014	0.02	15.4	0.9	2	23	521	542	520	542	0.97
18	25	0.006	0.084	13.5	4.2	2	23	548	569	547	569	0.97
19	25	0.00017	0.0024	18.4	0.8	2	23	575	596	574	596	0.97
20	25	0.15	2.1	9.1	0.3	2	23	602	623	601	623	0.96
21	25	0.11	1.6	9.5	2.0	2	23	629	650	628	650	0.97
22	25	0.00072	0.01	16.4	0.2	2	23	656	677	655	677	0.97
23	25	0.00018	0.0025	18.3	0.3	2	23	683	704	682	704	0.97
24	25	0.032	0.45	11.2	4.7	2	23	710	731	709	731	0.97
25	25	0.027	0.38	11.4	0.3	2	23	737	758	736	758	0.97

Sequence Information

Coding Sequence: ATGaatgaacatttaagaattcatCATGGACTAGATAGTAATCAATGTGGTTTTAAAACACAATCGGAACataaaaaagtacatttaaataatCATATAGGCAACaagtataaatgtaaggaatgtgattttaaaacagtgaggaaatcTAATCTTAACacacatatgagaattcatacaggtgacgaatttaagtgtaaagaatgcaattataaaactcCTAGGAAACAAGATTTTAACactcatatgaaaattcacactggtgataaattgaagtgtaatgaatgtgactacaaaacacatAGGAGATATGAATTAAACGAACAtgtgagaattcatacaggtgatctATTGaactgtaaggaatgtgactacaaaactcaTAGGAAACGAGATCTTAAcgcacatataaaaattcactCACGTGCAAAATTGAAGTGTAACGAATGTCACTACTATACATATAGGAATAGTAATTTTAtgaaacatgtgaaaattcacaaTGGTGAGACAGtgaagtgtaatgaatgtgactacaaaactcctaAGAAACAGAATCTTaaaaaacatatgaaaattcactcAAGCGATAAATtgaagtgtaacgaatgtgactaCTATACTTATAGGAAATATAATCTTATGGAACATGTGAAAATACACAGTGATGATAAATTGAAGTGTAAtaaatgtgactttaaaactcATAGGAAACGAGATCTTAACAGGCATATGGAAATTCATACAAGGGATAAACtgaagtgtaaagagtgtgactacaaaacacctaGGAAACAAGATTTTAACactcatatgaaaattcacactggtgataaattgaagtgtaatgaatgtgactacaaaactcctaAGAAACAGAATCTTAagaaacatatgaaaattcacactggtgataaattgaagtgtaaagaatgcaacTTTAAAACCTTTTTGGAATGTTCAATGaatgaacatttaagaattcatCATGGACTAGATAGTAATCAATGTGGTTTTAAAACACAATCGGAACataaaaaagtacatttaaataatCATATAGGCAACaagtataaatgtaaggaatgtgattttaaaacggtGAGGAAATCTAATCTTAACacacatatgagaattcatacaggtgacgaatttaagtgtaaagaatgcaattataaaactcCTAGGAAACAAGATTTTAACactcatatgaaaattcacactggtgataaattgaagtgtaatgaatgtgactacaaaacacatAGGAGATATGAATTAAACGAACAtgtgagaattcatacaggtgatctATTGaactgtaaggaatgtgactacaaaactcaTAGGAAACGAGATCTTAAcgcacatataaaaattcactCACGTGCAAAATTGAAGTGTAACGATTGTCACTACAATACATATAGGAATAGTAATTTTAtgaaacatgtgaaaattcacaaTGGTGAGTCAGtgaagtgtaatgaatgtgactacaaaactcctaAGAAACAGAATCTTAagaaacatatgaaaattcactcAAGCGATAAATtgaagtgtaacgaatgtgactaCTATACTTATAGGAAATATAATCTTATGGAACATGTGAAAATACACAGTGATGATAAATTGAAGTGTAAtaaatgtgactttaaaactcATAGGAAACGAGATCTTAACAGGCATATGGAAATTCATACAAGGGATAAACtgaagtgtaaagagtgtgactacaaaacacctaGGAAACAAGATCTTATcacacatatgaaaattcacacaggtgttaaattgacatgtaaagaatgtaactacAACACTCCTTTGGAACGATTGTTAAAAGAACATATGACAATTCATACGCGTGATgaattgaagtgtaaagaatgtgattatcaaACTGTGTGGAAATGTAATCTTAACgatcatatgaaaattcacacatgtgataaattgaagtgtaaagaatgtgactacgaAACTGTTAGGGAACGAGATCTTAAcgcacatataaaaattcacacaagggataaattgaagtgtaaagaatgtgattatgaaactgCTAGGAAACGAGATCTTAAcgcacatataaaaattcacacaagcgataaattgaagtgtaacgaatgtgactaCTATACTTATACGAAACACTGTCTTACCACACATATGATAGTTCACACTGGTGATAAATTGAAGTGTACTGAATGTGACTACATAACTCCTtggaaacaattattaaaacaacatatgagaattcatacaggtgatgaatttaagtgtaagaAATGCGactataaaactgtgtggaacTGCAGAAGAATATTGACTCAGAATTTGCAATTTGCTGTATCACATAACAATGGTCCTTTAATTGACATGTGTTCATCTCCACTGTATAAGTCAACTTGGAAATTAACAACTAGTAATCCATACAACTGTGCAATGCTTGAAGCCAAAACTATTGTGTTAATAGCAAATTTTTCTCATGATCAAGAGGGAAATGTTATGGTTATAATTGGAAAACAGTGTCATGTAGGTCCAATTTTTACTAATCTATGCAACTCAAccattttaaattgctttattgTAGAAGAACCAATTCCATGTCCATTAATGAAATGA
Protein Sequence: MNEHLRIHHGLDSNQCGFKTQSEHKKVHLNNHIGNKYKCKECDFKTVRKSNLNTHMRIHTGDEFKCKECNYKTPRKQDFNTHMKIHTGDKLKCNECDYKTHRRYELNEHVRIHTGDLLNCKECDYKTHRKRDLNAHIKIHSRAKLKCNECHYYTYRNSNFMKHVKIHNGETVKCNECDYKTPKKQNLKKHMKIHSSDKLKCNECDYYTYRKYNLMEHVKIHSDDKLKCNKCDFKTHRKRDLNRHMEIHTRDKLKCKECDYKTPRKQDFNTHMKIHTGDKLKCNECDYKTPKKQNLKKHMKIHTGDKLKCKECNFKTFLECSMNEHLRIHHGLDSNQCGFKTQSEHKKVHLNNHIGNKYKCKECDFKTVRKSNLNTHMRIHTGDEFKCKECNYKTPRKQDFNTHMKIHTGDKLKCNECDYKTHRRYELNEHVRIHTGDLLNCKECDYKTHRKRDLNAHIKIHSRAKLKCNDCHYNTYRNSNFMKHVKIHNGESVKCNECDYKTPKKQNLKKHMKIHSSDKLKCNECDYYTYRKYNLMEHVKIHSDDKLKCNKCDFKTHRKRDLNRHMEIHTRDKLKCKECDYKTPRKQDLITHMKIHTGVKLTCKECNYNTPLERLLKEHMTIHTRDELKCKECDYQTVWKCNLNDHMKIHTCDKLKCKECDYETVRERDLNAHIKIHTRDKLKCKECDYETARKRDLNAHIKIHTSDKLKCNECDYYTYTKHCLTTHMIVHTGDKLKCTECDYITPWKQLLKQHMRIHTGDEFKCKKCDYKTVWNCRRILTQNLQFAVSHNNGPLIDMCSSPLYKSTWKLTTSNPYNCAMLEAKTIVLIANFSHDQEGNVMVIIGKQCHVGPIFTNLCNSTILNCFIVEEPIPCPLMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -