Lyun000016.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:258738-261747[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 2.7 38 5.1 0.2 1 23 92 114 92 114 0.97
2 28 0.00014 0.0019 18.6 1.0 1 23 142 164 142 164 0.98
3 28 0.053 0.76 10.5 1.0 1 23 174 196 174 196 0.98
4 28 0.012 0.17 12.6 0.7 1 23 201 223 201 223 0.98
5 28 0.00012 0.0016 18.9 3.7 1 23 228 250 228 250 0.99
6 28 0.11 1.6 9.5 1.6 1 23 255 277 255 277 0.99
7 28 0.018 0.25 12.0 1.4 1 23 282 304 282 304 0.99
8 28 0.00098 0.014 15.9 0.9 1 23 309 331 309 331 0.99
9 28 0.0069 0.098 13.3 1.4 1 23 336 358 336 358 0.99
10 28 0.0092 0.13 12.9 0.8 1 23 363 385 363 385 0.98
11 28 0.0064 0.09 13.4 0.7 1 23 390 412 390 412 0.99
12 28 0.0097 0.14 12.8 1.0 1 23 431 453 431 453 0.99
13 28 0.0097 0.14 12.8 1.0 1 23 458 480 458 480 0.99
14 28 5.9e-05 0.00083 19.8 1.7 1 23 485 507 485 507 0.99
15 28 0.0069 0.098 13.3 1.4 1 23 512 534 512 534 0.99
16 28 0.06 0.85 10.3 0.3 1 23 539 561 539 561 0.98
17 28 0.0064 0.09 13.4 0.7 1 23 566 588 566 588 0.99
18 28 0.0048 0.069 13.8 0.6 1 23 593 615 593 615 0.99
19 28 0.0097 0.14 12.8 1.0 1 23 620 642 620 642 0.99
20 28 0.13 1.8 9.3 1.9 1 23 647 669 647 669 0.98
21 28 0.0034 0.048 14.2 0.8 1 23 674 696 674 696 0.99
22 28 0.0069 0.098 13.3 1.4 1 23 701 723 701 723 0.99
23 28 0.56 7.9 7.3 0.6 1 23 728 750 728 750 0.97
24 28 0.13 1.8 9.3 1.9 1 23 773 795 773 795 0.98
25 28 0.00041 0.0057 17.2 1.4 1 23 800 822 800 822 0.99
26 28 6.8e-06 9.6e-05 22.7 2.1 1 23 827 849 827 849 0.99
27 28 0.00034 0.0048 17.4 2.1 1 23 854 876 854 876 0.99
28 28 0.018 0.26 11.9 0.6 1 23 881 903 881 903 0.99

Sequence Information

Coding Sequence
ATGGATGTTGATTCAATAGTAAATTGTGCAATCAAATccgaagtgattttaacagaaacatttgcGTTTTCgggaaaatatgaagattgtggTGAGAGTGAAGAACCGAAAACAGAACTGACAGTTTATGaagaattgtttaaatgtaaagatGATTCTATAGAACACATTGACATACATGCTGCTCCGATGCAATGCATTAATGAACGTAATTTTATGACAATGGAAAAGGATTATCAgatagaacatttgaaaattattaaaaatgttcaatattcttGTGTGGAATGTAACTTTATAACAGAGTTAGAATCTTCCATAAAGGAGCACTTAAAAATTCACAATGGAGTAGATGGTCAATATATTAccgaagaatgtaattttaagttgCCAGAGCTCAAAACTGCAAGACTTCGCAAtgaatacatttgtaatgaatgtaccTATATGACATTTGACAAAAGTGATCTAAAgagacatataaaaattcataaaggtaATGACGTTACCTGTTACaaatataggtgtaaagaatgtaactataaagcaaGGCGGAAAATTTTTCTAGATGTTCATGTCAAAATCCAtacagatgatgaatataagtgtaaagaatgtgattataaaacagtgtggaacaGTAGTCTAAaagaacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggtgagGAAAcatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgttattataaaacagtgtggaaaaatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtatggaaaaatcaactaaaggatcatatcaaaattcatacaggtgatcaatataggtgtaaagaatgtgattataaaacaacgtgGAACAGTAGTCTAAAggcacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcaactaaagcaacacatcaaaattcatacaggcgataaatatgagtgtaaagaatgtgattataaaacagtgtggaaaaatcaactaaagcaacacatcaaaattcatacgggtgatgcatataagtgtaaagaatgtgattataaaacgatgTGGAACAGTAGTCTAAGggcacacatcaaaattcatacagtgtggaaaaatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaaatcaactaaaggaacatatcaaaattcatacaggagataaatataagtgtaaagaatgtgattataaaacagtgaggaaaaatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcaactaaagcaacacatcaaaattcatacaggcgataaatatgagtgtaaagaatgtgattataaagcagtgtggaaaaatcaactaaaggaacacatcaaaattcatacgggtgatgcatataagtgtaaagaatgtgattataaaacgatgTGGAACAGTAGTCTAAGggcacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaaaaccaactaaatgcacacataaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcagCTAAAGGaacacataaaaattcatatgggtgatgaatataagtgtaaagaatgtgattataaaacagtttggaaaaatcaactaaaggaacacttcaaaattcatacaggagacaaatataagtgtaaagaatgtgattataaagcagtgaggaaaaatcaaataaaggaacacatcaaaattcatataggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcaactaaagcaacacatcaaaattcatacaggcgataaatatgagtgtaaagaatgtgattataaagcagtgtggaaaaatcaactaaaggaacacttcaaaattcatacgggtgatgCATATAAtgtggaaaaatcactaaaggaacacataaaaattcatatgggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcaactaaaggaacacttcaaaattcatacaggagacaaatataagtgtaaacaatgtgattataaagcagtgaggaaaaatcaactaaaggaacacatcaaaattcatataggtgatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggcacacatgaaaattcatacaggtgacgaatataaatgtaaggaatgtgattataaaacagtgcagaaaaAGCACCTAGGGGcacacattaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaagctGTGTGGAAATATCAACTAagggaacacatcaaaattcatacagatgacaTAATATAA
Protein Sequence
MDVDSIVNCAIKSEVILTETFAFSGKYEDCGESEEPKTELTVYEELFKCKDDSIEHIDIHAAPMQCINERNFMTMEKDYQIEHLKIIKNVQYSCVECNFITELESSIKEHLKIHNGVDGQYITEECNFKLPELKTARLRNEYICNECTYMTFDKSDLKRHIKIHKGNDVTCYKYRCKECNYKARRKIFLDVHVKIHTDDEYKCKECDYKTVWNSSLKEHVKIHTGDEYKCKECDYKTVRKHQLKEHIKIHTGDEYKCKECYYKTVWKNQLKEHIKIHTGDEYKCKECNYKTVWKNQLKDHIKIHTGDQYRCKECDYKTTWNSSLKAHIKIHTGDEYKCKECDYKTVWKNQLKQHIKIHTGDKYECKECDYKTVWKNQLKQHIKIHTGDAYKCKECDYKTMWNSSLRAHIKIHTVWKNQLKEHIKIHTGDEYKCKECDYKTVWKNQLKEHIKIHTGDEYKCKECDYKTVWKNQLKEHIKIHTGDKYKCKECDYKTVRKNQLKEHIKIHTGDEYKCKECDYKTVWKNQLKQHIKIHTGDKYECKECDYKAVWKNQLKEHIKIHTGDAYKCKECDYKTMWNSSLRAHIKIHTGDEYKCKECDYKTVWKNQLNAHIKIHTGDEYKCKECDYKTVWKNQLKEHIKIHMGDEYKCKECDYKTVWKNQLKEHFKIHTGDKYKCKECDYKAVRKNQIKEHIKIHIGDEYKCKECDYKTVWKNQLKQHIKIHTGDKYECKECDYKAVWKNQLKEHFKIHTGDAYNVEKSLKEHIKIHMGDEYKCKECDYKTVWKNQLKEHFKIHTGDKYKCKQCDYKAVRKNQLKEHIKIHIGDEYKCKECDYKTVRKYQLKAHMKIHTGDEYKCKECDYKTVQKKHLGAHIKIHTGDEYKCKECDYKAVWKYQLREHIKIHTDDII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-