Lyun014847.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002119.1:3357636-3360656[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 8.1 1.2e+02 3.6 0.6 1 21 78 98 78 99 0.83
2 32 0.04 0.57 10.9 3.7 1 23 132 154 132 154 0.99
3 32 0.13 1.8 9.3 1.5 1 23 159 181 159 181 0.98
4 32 0.57 8 7.2 0.7 1 23 186 208 186 208 0.95
5 32 0.11 1.6 9.4 1.0 1 23 213 235 213 235 0.98
6 32 7.9e-05 0.0011 19.4 3.1 1 23 240 262 240 262 0.99
7 32 0.0068 0.096 13.3 3.1 1 23 267 289 267 289 0.99
8 32 0.0059 0.084 13.5 1.6 1 23 294 316 294 316 0.99
9 32 0.011 0.16 12.6 2.3 1 23 321 343 321 343 0.99
10 32 5e-05 0.00071 20.0 1.0 1 23 348 370 348 370 0.99
11 32 0.034 0.49 11.1 0.8 1 23 375 397 375 397 0.97
12 32 0.023 0.33 11.6 1.6 1 23 402 424 402 424 0.98
13 32 0.034 0.47 11.1 4.8 1 23 429 451 429 451 0.99
14 32 0.048 0.68 10.6 1.0 1 23 456 478 456 478 0.98
15 32 0.051 0.72 10.6 0.5 1 23 483 505 483 505 0.98
16 32 0.0019 0.027 15.1 0.4 1 23 510 532 510 532 0.98
17 32 0.048 0.68 10.6 0.5 2 23 534 555 533 555 0.96
18 32 4.3e-05 0.00061 20.2 2.0 1 23 560 582 560 582 0.99
19 32 0.00044 0.0062 17.0 2.6 1 23 587 609 587 609 0.99
20 32 0.0068 0.096 13.3 3.1 1 23 614 636 614 636 0.99
21 32 0.0059 0.084 13.5 1.6 1 23 641 663 641 663 0.99
22 32 0.011 0.16 12.6 2.3 1 23 668 690 668 690 0.99
23 32 5e-05 0.00071 20.0 1.0 1 23 695 717 695 717 0.99
24 32 0.034 0.49 11.1 0.8 1 23 722 744 722 744 0.97
25 32 0.023 0.33 11.6 1.6 1 23 749 771 749 771 0.98
26 32 0.034 0.47 11.1 4.8 1 23 776 798 776 798 0.99
27 32 0.048 0.68 10.6 1.0 1 23 803 825 803 825 0.98
28 32 0.051 0.72 10.6 0.5 1 23 830 852 830 852 0.98
29 32 0.00056 0.008 16.7 0.5 1 23 857 879 857 879 0.98
30 32 0.49 7 7.4 0.2 2 21 881 900 880 901 0.93
31 32 6.8e-05 0.00096 19.6 1.1 1 23 907 929 907 929 0.99
32 32 0.029 0.41 11.3 1.3 1 23 934 956 934 956 0.98

Sequence Information

Coding Sequence
ATGGAGGTGAATTATAGTGAATGCCGTCCAATAAAATCGGAAGTAATCGTAGATGAAACATTTTCGTTTTGTGGGAAACATGAAGATTATGGGAATGAACACTTGAAGACAGAGCCAGTAAATTtcgaagaatcttttaaatgcgAAGAAGTTAATTTAGCCaaatgtgattatgaaacacCATGGACACAGCTTCTAAAAGTACATGAGAGAATTCATATAGACAATGAGTATAAGTGCACTGAATGTGACTGTAATTCATTGCAAATAGCTGATTTACAAACACATACTAAAATtgatacaggtaatgaatataaatataagaaatgtGATTGTAAATCAATGCCGACACAGACTTTAaacaaacacataaaaatatacactcgtgacaaatacaagtgtaaggaatgtgactataaaacacggTGGAGGCAGAATTTACatcaacatataaaaattcacactggtgtcGAATACAAGTgtgaggaatgtgattataaaacatggtGGAAAAAGAATTTAAACCAACACATGAAAAGTCAcactggtgacgaatataagtgtaatgaatgtgattataagacatTGTGGAGAggtaatctaaagcaacatgtgaaAGTACAcattggtgatgaatataagtgcaatgaatgtgattataaaacgccatggaaacagcttttaaaaatgcatactaaaattcatacaggtgatgaatataagtgtaaggaatgcgattataaaacgcGTTCAAAACAGACTTTAAaccaacatatgaaaattcacactggtgatgaatataagtgtaaggaatgtgattataaaacacgttGGAAACGAACTTTAAagcaacatatgaaaattcacactggtgatgaatataagtgtgatgaatgtgtttataaaacaccatCGAAACAGACTTTCAaccaacatatgaaaattcacactggtgacgaatataagtgtatggaatgtgattataaaacacggtGGAAACGGACTTTAAACcgacatatgaaaattcacactggtgacgaatataagtgtaatgaatgtgattataagacgGTGAGGACTGGTGATCTAAAGCAACATATGAAAGtgcacactggtgatgaatataaatgtattgaatgtgattataaaacagtgagggcTCGttatctaaagcaacatgtgaaAGTGCACattggcgatgaatataagtgcaatgattgcgattataaaacacggtggaaacaaactttaaaccaacatgtgaaaattcacactggtgacgaatataagtgtaaggactgtgattataaaacatgttGGAAACGGACTTTAAaccaacatatgaaaattcacactggtgatgaatatatgtgtaaggaatgtgattataaaacacagtggaAATGGAATTTAAGccaacatatgaaaattcacactggtgacgaatataagtgtaatgaatgtgattataaaaccccATGGAAACAACTTCTGAAAGTACATGAAAGAatacatacaggtgatgaatataagtgcaatgaatgtgactataaaatattgcaaagagATAATTTACAAgcacatattaaaattcattcaaagtgtaacgaatgtgactataaaatattgcaaagagATAATTTACAAGCACAtactaaaattcatacaggtgatgaatataagtgcaaggactgtgattataaaacagtgagggcTCGttatctaaagcaacatatGAAAGtgcacactggtgatgaatataagtgtaaggaatgcgattataaaacgcGTTCAAAACAGACTTTAAACCAACATGTGaagattcatactggtgatgaatataagtgtaaggaatgtgattataaaacacgttGGAAACGAACTTTAAagcaacatatgaaaattcacactggtgatgaatataagtgtgatgaatgtgtttataaaacaccatCGAAACAGACTTTCAaccaacatatgaaaattcacactggtgacgaatataagtgtatggaatgtgattataaaacacggtGGAAACGGACTTTAAACcgacatatgaaaattcacactggtgatgaatataagtgtaatgaatgtgattataagacgGTGAGGACTGGTGATCTAAAGCAACATATGAAAGtgcacactggtgatgaatataaatgtattgaatgtgattataaaacagtgagggcTCGttatctaaagcaacatgtgaaAGTGCACattggcgatgaatataagtgcaatgattgcgattataaaacacggtggaaacaaactttaaaccaacatgtgaaaattcacactggtgacgaatataagtgtaaggactgtgattataaaacatgttGGAAACGGACTTTAAaccaacatatgaaaattcacactggtgatgaatatatgtgtaaggaatgtgattataaaacacagtggaAATGGAATTTAAGccaacatatgaaaattcacactggtgacgaatataagtgtaatgaatgtgattataaaaccccATGGAAACAACTTCTGAAAGTACATGAAAGAatacatacaggtgatgaatataagtgcaatgaatgtgactataaaacattgCAAAAAGGTAATTTACAAgcacatattaaaattcattcaaagtgtaacgaatgtgactataaaatattgcaaagagATAATTTACAAGCACATACTAAAATttatacaggtgatgaatataagtgcaaggactgtgattataaaacagcgagGGCTGGTTTTCTAAAGCAGCATATGAAAGTGCACACTGGTGACGAATAtcagtgtaaggaatgtaattataaaacacggtGGAAAGGGACCTTAAACCAACATGTGaagattcatactggtgatgaatataagtgttgtgaatgtgattataaaacaccatggaaacaacTTCTAAAACTACATAAAGGGATTCATACAGGTGGTGATTAA
Protein Sequence
MEVNYSECRPIKSEVIVDETFSFCGKHEDYGNEHLKTEPVNFEESFKCEEVNLAKCDYETPWTQLLKVHERIHIDNEYKCTECDCNSLQIADLQTHTKIDTGNEYKYKKCDCKSMPTQTLNKHIKIYTRDKYKCKECDYKTRWRQNLHQHIKIHTGVEYKCEECDYKTWWKKNLNQHMKSHTGDEYKCNECDYKTLWRGNLKQHVKVHIGDEYKCNECDYKTPWKQLLKMHTKIHTGDEYKCKECDYKTRSKQTLNQHMKIHTGDEYKCKECDYKTRWKRTLKQHMKIHTGDEYKCDECVYKTPSKQTFNQHMKIHTGDEYKCMECDYKTRWKRTLNRHMKIHTGDEYKCNECDYKTVRTGDLKQHMKVHTGDEYKCIECDYKTVRARYLKQHVKVHIGDEYKCNDCDYKTRWKQTLNQHVKIHTGDEYKCKDCDYKTCWKRTLNQHMKIHTGDEYMCKECDYKTQWKWNLSQHMKIHTGDEYKCNECDYKTPWKQLLKVHERIHTGDEYKCNECDYKILQRDNLQAHIKIHSKCNECDYKILQRDNLQAHTKIHTGDEYKCKDCDYKTVRARYLKQHMKVHTGDEYKCKECDYKTRSKQTLNQHVKIHTGDEYKCKECDYKTRWKRTLKQHMKIHTGDEYKCDECVYKTPSKQTFNQHMKIHTGDEYKCMECDYKTRWKRTLNRHMKIHTGDEYKCNECDYKTVRTGDLKQHMKVHTGDEYKCIECDYKTVRARYLKQHVKVHIGDEYKCNDCDYKTRWKQTLNQHVKIHTGDEYKCKDCDYKTCWKRTLNQHMKIHTGDEYMCKECDYKTQWKWNLSQHMKIHTGDEYKCNECDYKTPWKQLLKVHERIHTGDEYKCNECDYKTLQKGNLQAHIKIHSKCNECDYKILQRDNLQAHTKIYTGDEYKCKDCDYKTARAGFLKQHMKVHTGDEYQCKECNYKTRWKGTLNQHVKIHTGDEYKCCECDYKTPWKQLLKLHKGIHTGGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-