Lyun009398.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001723.1:363887-373554[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.014 0.2 12.3 1.5 1 23 98 120 98 120 0.98
2 29 2.3 32 5.3 0.3 5 21 129 145 128 145 0.93
3 29 0.00048 0.0068 16.9 2.0 1 23 146 168 146 168 0.99
4 29 0.00032 0.0046 17.5 1.3 1 23 173 195 173 195 0.98
5 29 0.048 0.68 10.6 2.2 1 23 200 222 200 222 0.98
6 29 0.21 2.9 8.6 1.5 1 23 227 249 227 249 0.98
7 29 0.00041 0.0057 17.2 3.2 1 23 254 276 254 276 0.99
8 29 0.027 0.38 11.4 1.2 1 23 281 303 281 303 0.98
9 29 0.089 1.3 9.8 0.9 1 23 308 330 308 330 0.98
10 29 0.00019 0.0027 18.2 4.3 1 23 335 357 335 357 0.99
11 29 0.012 0.17 12.5 1.3 1 23 362 384 362 384 0.98
12 29 0.0023 0.032 14.8 2.0 1 23 389 411 389 411 0.99
13 29 0.00057 0.0081 16.7 2.2 1 23 453 475 453 475 0.99
14 29 7.1 1e+02 3.8 0.5 1 14 480 493 480 494 0.86
15 29 0.00072 0.01 16.4 2.0 1 23 496 518 496 518 0.98
16 29 3.8e-05 0.00054 20.4 1.1 1 23 523 545 523 545 0.99
17 29 0.00085 0.012 16.1 0.6 1 23 589 611 589 611 0.98
18 29 7.7 1.1e+02 3.7 5.5 1 23 616 638 616 638 0.97
19 29 9.8e-05 0.0014 19.1 0.8 1 23 643 665 643 665 0.98
20 29 6.5e-05 0.00092 19.7 1.2 1 23 670 692 670 692 0.99
21 29 0.12 1.7 9.4 1.9 1 23 697 719 697 719 0.98
22 29 5.2e-05 0.00074 20.0 0.7 1 23 724 746 724 746 0.98
23 29 4.7e-05 0.00067 20.1 1.1 1 23 751 773 751 773 0.99
24 29 0.00013 0.0019 18.7 1.5 1 23 778 800 778 800 0.99
25 29 0.002 0.029 14.9 0.8 1 23 805 827 805 827 0.99
26 29 0.3 4.2 8.1 2.7 1 23 832 854 832 854 0.98
27 29 9.4 1.3e+02 3.4 1.4 1 13 859 871 859 873 0.82
28 29 0.007 0.098 13.3 4.7 2 23 876 897 875 897 0.96
29 29 0.0027 0.038 14.6 1.1 1 21 902 922 902 923 0.95

Sequence Information

Coding Sequence
ATGGATATCGACTCGGTAGACCTTATTGATAgttgtgctataaaatcagaagtgattttaacagagacattttctttttgtgggaaatacGAAGATTGTGGAAGTAAAGAACTGAAAACGGAACAAGTAAATTACGAAGAATCGTTTAAACCCAAAGTAGAAAATGATCTGACAAAACCCATTGTTACACATGCTGTTCCGATGCAACGAGATTTTTGTAATGACTCTAATTTTATAACACAGATTTTCTCTTTATCACCACAGTTGAAAACTCCAAGAAGTGGGAATGAAtatgtttgtaatgaatgtaattacaccacattgaacaaaaattatctaaGGAAACATGTGAAGATTCACAAAGGTGCTGCATATAGTAGTGagaaatgtaattacaaaacggCGTCAAAAAATCATCTAAATGAACATatcaaatataagtgtaaagaatgtaattttaaaactgcaaggaaaaataatctaatgcaacatgtcaaaattcatagtggtgatgaatataagtgtaaagaatgtgattttaaaactgtacggaaaagtgatctaatgcaacatgtccaACTTCATAGTCGTTACaaatataactgtaaagaatgtgattatcaGACTGTAtggaaaaatcatctaaaggaacatataagaagtcatacaggcgatgaatataagtgtaaagaatgtgattttaaaactgtatggaaaaataatctaatgcaacatagcaaaattcatattggtgatgaatataaatgtagcGAATGTGATTTTAAGACAGTAcggaaaaatcatctaaaggaacatatcaaaattcatacaggtgaagaatataagtgtaaagaatgtgactttaaaactgcatggaaaaataatctacggcaacatgtcaaaattcatggtggtgatgaatataactgtaaagaatgtgattataaaactatatggaaaaattatctaaaggaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgaggaaaaatcatctaaaggaacatattaaaagtcatacaggtgatgaatataagtgtaaagaatgtgattttaaaacaatatggagAAGCAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataagtgtaaagagtgtgattataaaacggtacggaaaaatcgtctaaaggaacatgtcaaaattcatacaggtgttgaATATTGTGGGAGTAAGGAACTGAATCCGGAGCCAGTAGATTACAAAGAATCTCTTATACCTAAGGAAGAAAAtgatctaaagcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaactggaCACAAaggtaatctaatgcaacatgtcaaaattcatactggtgacaaatatatgtgtaaagaatgtgattacaaaactgTACAGAAAGgtgacaaatatatgtgtaaagaatgtgattataaaactggaCACAAAGGTAATCTaatgaaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattacaaaactgTACAGAAAGGTAATCTaatgaaacatgtcaaaattcatacaggtgatgaatataaatgtaagaatgtgattataatacacGGTGGAAAAGTTCCTTCACAGCACATTCTAAAATTCattctgaaaTTTCATCTAAacgaacatgttaaaattcatacaggtgacaaatatgagtgtaaagaatgtgattataaaactgtacgaaAAAGTgttctaatgcaacatgtcaaaattcatacaggtgaagaacataagtgtaaagaatgtgattataaaacagtatggaaaaattgtctaaagctACATGTCAAAagtcatacaggtgacaaatatatgtgtaaagaatgtgattacaaaactgTACAGAAAGGTAATCTaatgaaacatgtcaaaattcatactggtgacaaatataaatgtaaagaatgtgattataaaactgtacagaaaggtaatctaatgcaacatgtcaaaatgcatactggtgacaaatataagtgtaaagagtgtgactataaaacagtgtggaaaactCAATTAAaggaacatttcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaactgtaagaaaGGGTGATCTAATGCGACATGTCAatattcacacaggtgatgaatataaatgtaaagaatgtgattataaaacgatacAGAAAGGCAATCTaatgaaacatgtcaaaattcatactgatgacaaatataagtgtaaagagtgtaattataaaactgtaaggaaaggtgatctaaagcaacatgtcaaaatacataaaggtgatgaatataagtgtaaagaatgtgattataaaactatagaGAAAACAAGTCTAattcaacatgtcaaaattcatacaggcgatgtatataagtgtaaagaatgtgattataaaacagtatggaaaaattgtctaaaggtacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaactggaCACAAAGgtgaagaatgtaagtgtaaagaatgtgattataaaacagtgtcaAAACAAAGTCTAAACAAACATAccaaaattcatacgggtgatgaatataagtgtaaagaatgtgattataaagcagTACACAAACGTAATCTAATGAAGCATGTCAAAATtaatactggtgacaaatatatgtgtaaagaatgtgattataaaactacagaaaatttatctaatgcaacatgtccaaattcatactggtga
Protein Sequence
MDIDSVDLIDSCAIKSEVILTETFSFCGKYEDCGSKELKTEQVNYEESFKPKVENDLTKPIVTHAVPMQRDFCNDSNFITQIFSLSPQLKTPRSGNEYVCNECNYTTLNKNYLRKHVKIHKGAAYSSEKCNYKTASKNHLNEHIKYKCKECNFKTARKNNLMQHVKIHSGDEYKCKECDFKTVRKSDLMQHVQLHSRYKYNCKECDYQTVWKNHLKEHIRSHTGDEYKCKECDFKTVWKNNLMQHSKIHIGDEYKCSECDFKTVRKNHLKEHIKIHTGEEYKCKECDFKTAWKNNLRQHVKIHGGDEYNCKECDYKTIWKNYLKEHIKIHTGDEYKCKECDYKTVRKNHLKEHIKSHTGDEYKCKECDFKTIWRSNLKQHVKIHTGDEYKCKECDYKTVRKNRLKEHVKIHTGVEYCGSKELNPEPVDYKESLIPKEENDLKQHVKIHTGDKYKCKECDYKTGHKGNLMQHVKIHTGDKYMCKECDYKTVQKGDKYMCKECDYKTGHKGNLMKHVKIHTGDEYKCKECDYKTVQKGNLMKHVKIHTGDEYKCKNVIIIHGGKVPSQHILKFILKFHLNEHVKIHTGDKYECKECDYKTVRKSVLMQHVKIHTGEEHKCKECDYKTVWKNCLKLHVKSHTGDKYMCKECDYKTVQKGNLMKHVKIHTGDKYKCKECDYKTVQKGNLMQHVKMHTGDKYKCKECDYKTVWKTQLKEHFKIHTGEEYKCKECDYKTVRKGDLMRHVNIHTGDEYKCKECDYKTIQKGNLMKHVKIHTDDKYKCKECNYKTVRKGDLKQHVKIHKGDEYKCKECDYKTIEKTSLIQHVKIHTGDVYKCKECDYKTVWKNCLKVHVKIHTGDEYKCKECDYKTGHKGEECKCKECDYKTVSKQSLNKHTKIHTGDEYKCKECDYKAVHKRNLMKHVKINTGDKYMCKECDYKTTENLSNATCPNSYW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-