Lyun015673.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002175.1:4592705-4610344[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.015 0.22 12.2 1.4 1 23 72 94 72 94 0.98
2 31 0.56 7.9 7.3 5.5 1 23 99 121 99 121 0.99
3 31 8.6e-05 0.0012 19.3 1.9 1 23 126 148 126 148 0.99
4 31 4.5e-05 0.00063 20.2 1.4 1 23 153 175 153 175 0.99
5 31 8.6e-05 0.0012 19.3 1.8 1 23 180 202 180 202 0.99
6 31 0.0003 0.0042 17.6 1.2 1 23 207 229 207 229 0.98
7 31 4.5e-05 0.00063 20.2 1.4 1 23 234 256 234 256 0.99
8 31 8.6e-05 0.0012 19.3 1.8 1 23 261 283 261 283 0.99
9 31 5.1 72 4.3 0.6 2 21 363 382 362 383 0.92
10 31 0.023 0.32 11.6 1.3 1 23 446 468 446 468 0.98
11 31 0.56 7.9 7.3 5.5 1 23 473 495 473 495 0.99
12 31 0.0011 0.015 15.8 2.3 1 23 500 522 500 522 0.99
13 31 7.7e-05 0.0011 19.4 1.2 1 23 527 549 527 549 0.99
14 31 0.00011 0.0015 19.0 1.8 1 23 554 576 554 576 0.99
15 31 0.03 0.43 11.3 0.8 1 23 581 603 581 603 0.98
16 31 0.0001 0.0014 19.1 3.3 1 23 608 630 608 630 0.98
17 31 0.00028 0.004 17.7 4.0 1 23 635 657 635 657 0.98
18 31 0.0012 0.018 15.6 2.2 2 23 663 684 662 684 0.96
19 31 0.00018 0.0025 18.3 3.0 1 23 689 711 689 711 0.98
20 31 0.64 9.1 7.1 1.8 1 23 716 738 716 738 0.96
21 31 0.037 0.52 11.0 2.3 1 23 743 765 743 765 0.98
22 31 0.27 3.8 8.3 4.0 1 23 770 792 770 792 0.98
23 31 5.3e-05 0.00074 19.9 1.7 1 23 797 819 797 819 0.98
24 31 6e-05 0.00084 19.8 2.3 1 23 828 850 828 850 0.99
25 31 1.2 18 6.2 1.5 1 23 855 877 855 877 0.94
26 31 0.15 2.2 9.0 1.9 1 23 882 904 882 904 0.98
27 31 0.1 1.4 9.6 3.4 1 23 909 931 909 931 0.98
28 31 6e-05 0.00084 19.8 2.3 1 23 943 965 943 965 0.99
29 31 0.15 2.1 9.1 0.7 1 23 970 992 970 992 0.98
30 31 1.3 19 6.1 3.6 1 23 997 1019 997 1019 0.96
31 31 0.1 1.4 9.6 3.4 1 23 1024 1046 1024 1046 0.98

Sequence Information

Coding Sequence
ATGGAAAAAGATTTTCTAATAGAAATTACGAGAGaatttccatatttttgtaaggaatgtaaatttGGGACTCTGTTAGAATGTTCCATTAAAGAGCATTTAAAAACTCACAATGGAGCTGTTGATAGGTGtaatattgaagaatgtaattcCAAGCCTCCATACACTCTCTTTGTAATACCGCATTTGAAATCTCAAAAAGGTGGTAACGAATATATTTGCAATGAGTGTAACTATACCACATTAAGCAAAAACTATCTAAGAAAACATGTGAGAATTCATAGAGATGCCAAATATACTTGCGAgaagtgtgattataaaacatggAACAAACATTATTTCACAGTACATCAAAAAAGACATatgggtgatgaatataagtgtaaggaatgcgagtataaaacagtgcgaaaaataaatctaaagtcACATATGaagattcatacaggtgaagaatataaatgtaaaatatgtgactataaaacggtgcgaaaagatagtctaaaggaacatctcaaaattcatacaggtgacaaatataagtgtaaagaatgtgagtataaaacaaTTCGAAAACGCAATCTAATatcacatatgaaaattcatacaagtaacAAATATAACTGTAAggaatgtgagtataaaacagtgcgaaaaataaatctcaactCACATATGaagattcatacaggtgaagaatataaatgtaaaatatgtgactataaaacagtgcgaaaagatagtctaaaggaacatctcaaaattcatacaggtgacaaatataagtgtaaagaatgtgagtataaaacGATTCGAAAACGCAATCTAATatcacatatgaaaattcatacaggtaacaaATATAACTGTAAGGAATGCGAAATGGATGTAGAATCAATGGGAGGTTGTGCGttaaaatctgaagtgattttaacagaaacgtttTCGTTCTGTGAGAAATATGGAGATAACGGGAGTACAGAATTGAAAATTGAGCCAGCAGATTATGCAGAAtcatttaaatgtaaggaagaagAAGACTTTGCGGAACATGCGCATGTACATGCTGCACCTATGCAACAACTTTGTTGTAACAAGTGTAATTTTACAACAATAGAAAAAGGTTTTCTAAtagaacatttacaaattactagAGAATTTCCATACTTTTGTAAGGAATGCAAATTCGGGACTCTGTTAGAATGTTCCATAAAAGAGCATTTACAAATTGACAATAGAGGTGTTGATGGCTGtaatattgaagaatgtaattcCAAGCCTCCATGCACCATCTCTGTAATACCACATTTGAAATCTCAAAACGGTGGTAACGAATATATTTGCAGTGAGTGTAACTATACTACATTAAGCAAAAACTATCTAAGAAAACATGTGAGAATTCATAGAGATGCCAAATATACTTGCGAGaagtgtgactataaaacatgGAATAAACATTATTTCACAGTACATCAAAAAAGACATAtgggcgatgaatataagtgtaaggaatgcgaGTATAAAACAATGCGAAAATTAAATCTAAACTCACATATGaagattcatacaggtgaagaatataaatgtaaaatatgtgactataaaacagtgcgaaaagatagtctaaaggaacatgtcaaaattcatacaggtgacaaatataagtgtaaagaatgtgagtataaaacagtgcggaaaaacGATCTAAAAACACATATGAACGTTCATACAGGTagcgaatataagtgtaaagaatgtgattataaaacagtgtgggaaAATAGTCTCAAactacatatgaaaattcatacagatgctgaatataagtgtaaagaatgtgattataaaacagtgcggaaagatCATCTAATGAATCATATCAAACTTCATACAGGTGGTGAacataagtgtaatgaatgtgattataaaacagtgcgaaaaaattctctaaaaacgcatatgaaaattcatacaggtatcAAATTGagctgtaaagaatgtgattataaaacagtgcggaaatatCATCTAATGGAACATATCAAACTTCATACAGGTGGTGAacataagtgtaatgaatgtgattataaaacagtgcggaaaaatGATCTAAAAACACATATGAACATTCATAGAGGTAgcgaatataagtgcaaagaatgtgattataaaacattgtggaaaaataatctaaaatcacatttgaaaattcatacaggtggcgaacataagtgcaaagaatgtgattataaaacagtgtgggaaaataatctaaaatcacatatgaaaattcatgcaggagccgaatataaatgtaaacaatgtgattataaaacagtgtggaaaaatcatctaaagaaccatgtcaaacttcatacaggtgatgaatataactgtaaagaatgtgagtataaaacagtgcggaaagatAATCTAAAATCACATATGAAGGTTCATTCAGGTGCAGGTGAGGGTggagaatataagtgtaaagaatgtaattataaaacagtgcggaaaaacGATCTAAAAACACATATGAACGTTCATACAGGTagcgaatataagtgtaaagaatgtgattataaaacattgtggaaaaataatctaaaatcacattggaaaattcatacaggtggcgaacataagtgcaaagaatgtgattataaaacagtgtgggaaAATAGTCTCAAactacatatgaaaattcatacaggtgccgaatataagtgtaaagaatgtgattataaaacggtgtggaaaaatcatctaaagaaccATGTCAAacttcacacagGTTCATTCAGTGCAGGTGAGGGTggagaatataagtgtaaagaatgtaattataaaacagtgcggaaaaacGATCTAAAAACACATATGAACGTTCATACAGGTagcgaatataagtgtaaagaatgtgattataaaacagtgtgggaaAATAGTCTAAAATCACATtggaaaattcatacaggtggtgaacataagtgcaaagaatgtgattataaaacattgtggaaaaataatctaaaatcacatatgaaaattcatacaggtgccgaatataagtgtaaagaatgtgattataaaacggtgtggaaaaatcatctaaagaaccATGTCAAacttcacacaggtgatgaatataactaa
Protein Sequence
MEKDFLIEITREFPYFCKECKFGTLLECSIKEHLKTHNGAVDRCNIEECNSKPPYTLFVIPHLKSQKGGNEYICNECNYTTLSKNYLRKHVRIHRDAKYTCEKCDYKTWNKHYFTVHQKRHMGDEYKCKECEYKTVRKINLKSHMKIHTGEEYKCKICDYKTVRKDSLKEHLKIHTGDKYKCKECEYKTIRKRNLISHMKIHTSNKYNCKECEYKTVRKINLNSHMKIHTGEEYKCKICDYKTVRKDSLKEHLKIHTGDKYKCKECEYKTIRKRNLISHMKIHTGNKYNCKECEMDVESMGGCALKSEVILTETFSFCEKYGDNGSTELKIEPADYAESFKCKEEEDFAEHAHVHAAPMQQLCCNKCNFTTIEKGFLIEHLQITREFPYFCKECKFGTLLECSIKEHLQIDNRGVDGCNIEECNSKPPCTISVIPHLKSQNGGNEYICSECNYTTLSKNYLRKHVRIHRDAKYTCEKCDYKTWNKHYFTVHQKRHMGDEYKCKECEYKTMRKLNLNSHMKIHTGEEYKCKICDYKTVRKDSLKEHVKIHTGDKYKCKECEYKTVRKNDLKTHMNVHTGSEYKCKECDYKTVWENSLKLHMKIHTDAEYKCKECDYKTVRKDHLMNHIKLHTGGEHKCNECDYKTVRKNSLKTHMKIHTGIKLSCKECDYKTVRKYHLMEHIKLHTGGEHKCNECDYKTVRKNDLKTHMNIHRGSEYKCKECDYKTLWKNNLKSHLKIHTGGEHKCKECDYKTVWENNLKSHMKIHAGAEYKCKQCDYKTVWKNHLKNHVKLHTGDEYNCKECEYKTVRKDNLKSHMKVHSGAGEGGEYKCKECNYKTVRKNDLKTHMNVHTGSEYKCKECDYKTLWKNNLKSHWKIHTGGEHKCKECDYKTVWENSLKLHMKIHTGAEYKCKECDYKTVWKNHLKNHVKLHTGSFSAGEGGEYKCKECNYKTVRKNDLKTHMNVHTGSEYKCKECDYKTVWENSLKSHWKIHTGGEHKCKECDYKTLWKNNLKSHMKIHTGAEYKCKECDYKTVWKNHLKNHVKLHTGDEYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-