Lyun009049.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001601.1:544969-547394[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1 15 6.4 1.1 1 23 259 281 259 281 0.97
2 18 6.4e-05 0.00091 19.7 2.4 1 23 287 309 287 309 0.99
3 18 0.00041 0.0059 17.1 0.4 1 23 315 337 315 337 0.99
4 18 0.0055 0.077 13.6 3.7 1 23 343 365 343 365 0.98
5 18 1.9e-05 0.00027 21.3 2.1 1 23 371 393 371 393 0.99
6 18 8e-05 0.0011 19.4 0.2 1 23 399 421 399 421 0.99
7 18 2.5e-05 0.00035 21.0 2.2 1 23 427 449 427 449 0.99
8 18 0.0055 0.078 13.6 2.4 1 23 455 477 455 477 0.98
9 18 1.1e-05 0.00015 22.1 0.8 1 23 483 505 483 505 0.99
10 18 2.3e-05 0.00033 21.1 0.9 1 23 511 533 511 533 0.98
11 18 1.6e-05 0.00023 21.5 3.3 1 23 539 561 539 561 0.99
12 18 7.2e-05 0.001 19.5 0.2 1 23 567 589 567 589 0.98
13 18 0.00014 0.002 18.6 5.0 1 23 595 617 595 617 0.98
14 18 0.0012 0.017 15.7 0.1 1 23 623 645 623 645 0.99
15 18 0.00014 0.002 18.6 5.0 1 23 651 673 651 673 0.99
16 18 4.4e-05 0.00063 20.2 0.4 1 23 679 701 679 701 0.99
17 18 0.00012 0.0017 18.8 4.0 1 23 707 729 707 729 0.99
18 18 0.0057 0.08 13.5 2.8 1 23 735 757 735 757 0.99

Sequence Information

Coding Sequence
atGGAAAGTAATTCGTATGAAAATATATACGAGGTGTGCAGAACATGTTTGCAACAAATAACACGCGGTTCGCAATTATATTATTTGGATACAACCTCTTCCAGTGTCGAACCAATTACAATAAGAAATAAGCTTAGAAGTTTCGTGCCGGAGCTTGATCTTAATATAACTCCAAATGCAGCCATATGCAGTGAATGCACTGAAGCAATTAATGTGGCTCACAAATTTAAAGAGAAATGTTtgcaaacagaaaaaaatatacatagttACGTGCAAAAGATGGACTACTCTTCCACTTATGTTGACTTAATTCATGTCGTtcagcaaaacaaaaatgatagaCCTCAAATTCATACtgtacaaataaaacaagaggttGTCGATGAACCCCAATCGTTCACTTCGTTTTTAGGTAACGTCAAAGAGGAAAATCTCCAGTGTAGCTATGAATCTGAAGTTCCGTGTGACTCCAGTTACATAGATCTTGAGAATGACGACAACGATGATTCCACAGATAAAGACGAGTCTGAGATTCAAACGTACAAAGTTGAAACTATTTTAGGCAACAGTGACAAAGAAAACGATTTACCCGTAATGCTTCCAAAAGAGAATACTGAAATCAAAAGCAGCGATAATGAAGATATCAAAGAATTTGAAAGTATAACCTTACCTATGGATGTTGAATTAACCCCCGAAGTTCCGGATGTTGAAGATACAAAACCAAACATTTTTAACCCTAGTAGATACATGAGGACATTGTTTGGACGTCCCTTATATAACTGTCGTGTTTGTGGATATAAAACCGCTCTTAAACGTCGTTATGTATTGCATATGAAACTTCACGAAGCAAATAAGCTATTTAAATGTGAGGAGTGTGATTATGTATGTGCACAACGTAGCAATTTTAACGTACACAAGCGTATACACTCTGGCTTTAAACCATATAAATGTGACCAATGCAGTTACTCGACAGTTTCAAATTCGGCCTTGATTGTTCATAAACGGATACACACAGGGGAGAAACCTTATTGTTGCAATGTTTGTCATTATACCACAATCTCAAAATCAGCATTAACCGTTCATAATCGAATTCATACTGGCAGCAAACCATATAGATGCAACTTGTGCACGTACCGCACAGTCACCAAGTCTTCTTTAACAGTACATATGCGTACACACACCGGGGACCGACCTTATAAATGTAATCTATGCCCATACAGTACAACAGCAAAATCTGCTTTAAACGTACATATAAGAATTCATGAGGGATACAAACCATTTCAGTGTTCTGAGTGCGAATATCGTTGTACTCAAAGAAGCGGTTTAAATGTGCACATGCGtgttcatactggtgataaacCTTATCATTGCACTAAATGCGAGTATAAAAGCAGTAACAGGAGCAGTTTAGTGGTTCACGAAAGAGTACATTCAGGAGAAACTCCATATAAATGcacagaatgtgattatagtACTGCCTCAAAATCATCTTTAAATGTTCACACAAGGATCCATGGAGATAATAAGCCTTTTATATGTGTTGAATGTGGTTATAAATGTGCACAAAGAAGCGGATTGACTGTACACATGAGAACACATACAGGAGACAGGCCATATCAGTGCTCTCAATGTGATTATCGTTGCAGTTACCGTGGCAACTTAAAGGTGCATATGAGAGTGCATACTGGAGAGACACCGTATGTTTGCTTTGTTTGTGGATACAGTACAACATCTAAATCTGCATTAGTTGTTCACACGCGAATTCATACTGGCGAGAAACCATATCACTGTACTGAGTGTCCTTATAAATGCAGCACCAAAAGCAGTTTGAAAGTGCATCTACGAGTACACACAGGGGAAACGCCATACGAATGTAGTGTATGTACTTATAAAACCACAGCAAATTCGGCTTTAGTGGTACATATGCGAATACATACAGGGGAGAAACCTTACAAGTGTACAGAGTGCACTTATAAGTGCAGCAACAAAAGTAGTTTGAAGGTGCACACGCGAATACATACTGGAGAGACCCCGTTTAAATGCAcagtatgtgactacagtacaACTTCAAATTCAGCTTTGGTTGTCCACACCCgcattcatacaggtgacaaaccGTATCAATGCAATGACTGCTCTTACAgatgtaacaacaaaaacagTTTAAAGGTACACATGAAGGTGCACAGAGGAAGGACACCTTATAGGTGCGAGGTATGTGCATATGCTTGTAAAAAACGTTTTGTACTAAAACGTCACATGCGTATCCATGCCAAAGAGGAACTTATTCGAAAATTTAAAGCGGAATTACTTCTGCCAATGAAGAATACTGAAAATGTGCCACAGGTTAAAGAAGATGTCGGTAATGTTTCGTAG
Protein Sequence
MESNSYENIYEVCRTCLQQITRGSQLYYLDTTSSSVEPITIRNKLRSFVPELDLNITPNAAICSECTEAINVAHKFKEKCLQTEKNIHSYVQKMDYSSTYVDLIHVVQQNKNDRPQIHTVQIKQEVVDEPQSFTSFLGNVKEENLQCSYESEVPCDSSYIDLENDDNDDSTDKDESEIQTYKVETILGNSDKENDLPVMLPKENTEIKSSDNEDIKEFESITLPMDVELTPEVPDVEDTKPNIFNPSRYMRTLFGRPLYNCRVCGYKTALKRRYVLHMKLHEANKLFKCEECDYVCAQRSNFNVHKRIHSGFKPYKCDQCSYSTVSNSALIVHKRIHTGEKPYCCNVCHYTTISKSALTVHNRIHTGSKPYRCNLCTYRTVTKSSLTVHMRTHTGDRPYKCNLCPYSTTAKSALNVHIRIHEGYKPFQCSECEYRCTQRSGLNVHMRVHTGDKPYHCTKCEYKSSNRSSLVVHERVHSGETPYKCTECDYSTASKSSLNVHTRIHGDNKPFICVECGYKCAQRSGLTVHMRTHTGDRPYQCSQCDYRCSYRGNLKVHMRVHTGETPYVCFVCGYSTTSKSALVVHTRIHTGEKPYHCTECPYKCSTKSSLKVHLRVHTGETPYECSVCTYKTTANSALVVHMRIHTGEKPYKCTECTYKCSNKSSLKVHTRIHTGETPFKCTVCDYSTTSNSALVVHTRIHTGDKPYQCNDCSYRCNNKNSLKVHMKVHRGRTPYRCEVCAYACKKRFVLKRHMRIHAKEELIRKFKAELLLPMKNTENVPQVKEDVGNVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00153713;
90% Identity
-
80% Identity
-