Lyun008794.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001556.1:28510-32037[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.009 0.13 12.9 1.2 1 23 152 174 152 174 0.98
2 35 0.0024 0.035 14.7 1.1 1 23 179 201 179 201 0.98
3 35 0.25 3.5 8.4 2.5 1 23 206 228 206 228 0.97
4 35 0.00062 0.0087 16.6 4.1 1 23 233 255 233 255 0.99
5 35 0.0055 0.078 13.6 1.2 1 23 260 282 260 282 0.99
6 35 0.024 0.34 11.6 1.3 1 23 287 309 287 309 0.98
7 35 0.023 0.32 11.7 1.1 1 23 314 336 314 336 0.98
8 35 0.072 1 10.1 1.2 1 23 341 363 341 363 0.98
9 35 0.0036 0.051 14.2 1.8 1 23 368 390 368 390 0.98
10 35 0.0024 0.035 14.7 1.1 1 23 395 417 395 417 0.98
11 35 0.25 3.5 8.4 2.5 1 23 422 444 422 444 0.97
12 35 0.0057 0.081 13.5 4.5 1 23 449 471 449 471 0.99
13 35 0.051 0.72 10.5 2.2 1 23 476 498 476 498 0.98
14 35 0.024 0.34 11.6 1.3 1 23 503 525 503 525 0.98
15 35 0.023 0.32 11.7 1.1 1 23 530 552 530 552 0.98
16 35 0.005 0.071 13.7 1.3 1 23 557 579 557 579 0.98
17 35 0.0036 0.051 14.2 1.8 1 23 584 606 584 606 0.98
18 35 0.004 0.057 14.0 1.3 1 23 611 633 611 633 0.99
19 35 0.0032 0.045 14.3 1.5 1 23 638 660 638 660 0.98
20 35 0.00062 0.0087 16.6 4.1 1 23 665 687 665 687 0.99
21 35 0.0057 0.081 13.5 0.8 1 23 692 714 692 714 0.98
22 35 0.0032 0.045 14.3 1.5 1 23 719 741 719 741 0.98
23 35 0.25 3.5 8.4 2.5 1 23 746 768 746 768 0.97
24 35 0.00062 0.0087 16.6 4.1 1 23 773 795 773 795 0.99
25 35 0.0055 0.078 13.6 1.2 1 23 800 822 800 822 0.99
26 35 0.017 0.25 12.0 0.7 1 23 827 849 827 849 0.98
27 35 0.0049 0.07 13.7 1.2 1 23 854 876 854 876 0.99
28 35 0.055 0.78 10.4 1.6 1 23 881 903 881 903 0.98
29 35 0.0036 0.051 14.2 1.8 1 23 908 930 908 930 0.98
30 35 0.25 3.5 8.4 2.5 1 23 935 957 935 957 0.97
31 35 0.00062 0.0087 16.6 4.1 1 23 962 984 962 984 0.99
32 35 0.0055 0.078 13.6 1.2 1 23 989 1011 989 1011 0.99
33 35 0.12 1.7 9.4 1.7 1 23 1016 1038 1016 1038 0.98
34 35 0.0028 0.039 14.5 1.1 1 23 1043 1065 1043 1065 0.99
35 35 0.014 0.19 12.3 1.8 1 23 1070 1092 1070 1092 0.99

Sequence Information

Coding Sequence
ATGGATGCTACTTctattgaaagttgtgcaaTCAAATCTGAAGTAATTTTAACGGAAACGTTTTCGTTTTGTGGACAATATAAAGATTATGGagataaagaattaaaaactgAACCAGTAGATTatgaagaatcttttaaatgcaaGGAAAAAGATATTTCTATAGAGCACACTGGTGTGCATGTTGCTCCGatgcaacaatttttttgcaatgaGTGTGACTTTATTACTTTGGAAAAAGATTTTCTAATGGAACACttgaaaactactaaaaacgtcaaatatttttgtaaggaatgtaactttacaacccAGCTACAGTGTTCCATAAAAAAGCATTTCGATATTCATAAAGGGGTAGATGGTAAATGtaatattgaagaatgtaattttcagACTTCACACAGTTTCTGTTTAACACCACAGTGGACAACTCGTAAAGGTGGCGACAAATAtacttgtaatgaatgtaattataccacattAATCAAAAGTTCACTTAGAagacatattaaaattcataaaggggctgaatataagtgtaaagaatgtgattataaaacagcatggaaaagtaatctaacgAAACATGCTaaaatccatacaggtgataaatataagtgtaaaaaatgtgactataaaacattgCGTACAAATTccctaaaggaacatgttaaaatccatacaggtgacgaatataagtgtaaacattgtaactataaaacagtgcgaaaagatagtctaaaagaacatgtcaaaattcatacaggtgatgcatatcagtgtaaagaatgtaattataaaacagcatggcaaagtagtctaaagaaacatgtcaaaattcatacaggtgatgaatatcagtgtaaagaatgcgattataaaacagtatggcaaaataatctaaagaacCATGAAAAAAGTCATGCAGGTGTCCaatataactgtaaagaatgtgattataaaacaacatggcaaagtagtctaaagatgcatgtcaaaattcatacaggtgatgaatatcagtgtaaagaatgtgattataaaacagtatggcaaaATAGTCTAAGGAACCATGAAAAAAGTCATGCAGATGtccaatataagtgtaaagaatgtgattataaaacaacatggcaaagtagtctaaagaaacatgctaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagcatggaaaagtaatctaacgAAACATGCTaaaatccatacaggtgatgaatataagtgtaaaaaatgtgactataaaacattgCGTACAAATTccctaaaggaacatgttaaaatccatacaggtgacgaatataagtgtaaacattgtaactataaaacagtgcgaaaagatcgtctaaaagaacatgtcaaaattcatacaggttatgaatataagtgtaaagattgtgattataaaacagtgtggcacggtagtctaaagaaacatgtcaaaattcatacaggtgatgaatatcagtgtaaagaatgcgattataaaacagtatggcaaaataatctaaagaacCATGAAAAAAGTCATGCAGGTGTCCaatataactgtaaagaatgtgattataaaacaacatggcaaagtagtctaaagatgcatgtcaaaattcatacaggtgatgaatatcagtgtaaagaatgtgattataaaacagtatggcaaagtaatctaaagaACCATGAAAAAAGTCATGCAGATGtccaatataagtgtaaagaatgtgattataaaacaacgtggcaaagtagtctaaagaaacatgctaaaatccatacaggtgatgaatataagtgtaaagaatgtgattataaaacaacgtggcaaagtagtctaaaccaacatgtcaaaattcatacaggtgatgaatatcagtgtaaagaatgtgattataaaacaacgtggcaaagtagtctaaagaaacatgctaaaatccatacaggtgacgaatataagtgtaaacattgtaactataaaacagtgcgaaaagatagtttaaaagaacatgtcaaaattcatacaggtgatgcatatcagtgtaaagaatgtgattataaaacagcatggcaaagtagtctaaagaaacatgctaaaatccatacaggtgatgaatatcagtgtaaagaatgtgattataaaacaacgtggcaaagtagtctaaagaaacatgctaaaatccatacaggtgacgaatataagtgtaaaaaatgtgactataaaacattgCGTACAAATtccctaaaggaacatgtcaaaatccatacaggtgacgaatataagtgtaaacattgtaactataaaacagtgcgaaaagatagtctaaaagaacatgtcaaaattcatacaggtgatgcatatcagtgtaaagaatgtaattataaaacagcatggcaaagtagtctaaagaaacatgtcaaaattcatacaggtgacaaatatgagtgtaaagaatgtgattttaaaactgtatggcaaagtaatctaaagaaccatgaaaaaattcatgcaggcgtccaatataagtgtaaagaatgtaattataaaacaccatggcaaagtaatctaaagacacatgtcaaaattcatacaggtgacaaatataagtgtagagaatgtgattttaaaacagtatggcaaagtaatctaaagaACCATGAAAAAAGTCATGCAGATGtccaatataagtgtaaagaatgtgattataaaacaacgtggcaaagtagtctaaagaaacatgctaaaatccatacaggtgatgaatataagtgtaaaaaatgtgactataaaacattgCGTACAAATtccctaaaggaacatgtcaaaatccatacaggtgacgaatataagtgtaaacattgtaactacaaaacagtgcgaaaagatagtttaaaagaacatgtcaaaattcatacaggtgatgcatatcagtgtaaagaatgtaattataaaacagcatggcaaagtagtctaaagaaacatgtcaaaattcatacaggtgatgaatatcagtgtaaagaatgcagttataaaacagtatggcaaaataatctaaagaacCATGAAAAAAGTCATGCAGGTGtccaatataagtgtaaagaatgtgattataaaacaacgtgGCAAAGTAGTCTAtggaaacatgtcaaaattcatacaggtgatatatacaagtgtaaagaatgtgattataaaactccATGGAAATATTCtctaaaattacatattaaaagaCACAGGTAA
Protein Sequence
MDATSIESCAIKSEVILTETFSFCGQYKDYGDKELKTEPVDYEESFKCKEKDISIEHTGVHVAPMQQFFCNECDFITLEKDFLMEHLKTTKNVKYFCKECNFTTQLQCSIKKHFDIHKGVDGKCNIEECNFQTSHSFCLTPQWTTRKGGDKYTCNECNYTTLIKSSLRRHIKIHKGAEYKCKECDYKTAWKSNLTKHAKIHTGDKYKCKKCDYKTLRTNSLKEHVKIHTGDEYKCKHCNYKTVRKDSLKEHVKIHTGDAYQCKECNYKTAWQSSLKKHVKIHTGDEYQCKECDYKTVWQNNLKNHEKSHAGVQYNCKECDYKTTWQSSLKMHVKIHTGDEYQCKECDYKTVWQNSLRNHEKSHADVQYKCKECDYKTTWQSSLKKHAKIHTGDEYKCKECDYKTAWKSNLTKHAKIHTGDEYKCKKCDYKTLRTNSLKEHVKIHTGDEYKCKHCNYKTVRKDRLKEHVKIHTGYEYKCKDCDYKTVWHGSLKKHVKIHTGDEYQCKECDYKTVWQNNLKNHEKSHAGVQYNCKECDYKTTWQSSLKMHVKIHTGDEYQCKECDYKTVWQSNLKNHEKSHADVQYKCKECDYKTTWQSSLKKHAKIHTGDEYKCKECDYKTTWQSSLNQHVKIHTGDEYQCKECDYKTTWQSSLKKHAKIHTGDEYKCKHCNYKTVRKDSLKEHVKIHTGDAYQCKECDYKTAWQSSLKKHAKIHTGDEYQCKECDYKTTWQSSLKKHAKIHTGDEYKCKKCDYKTLRTNSLKEHVKIHTGDEYKCKHCNYKTVRKDSLKEHVKIHTGDAYQCKECNYKTAWQSSLKKHVKIHTGDKYECKECDFKTVWQSNLKNHEKIHAGVQYKCKECNYKTPWQSNLKTHVKIHTGDKYKCRECDFKTVWQSNLKNHEKSHADVQYKCKECDYKTTWQSSLKKHAKIHTGDEYKCKKCDYKTLRTNSLKEHVKIHTGDEYKCKHCNYKTVRKDSLKEHVKIHTGDAYQCKECNYKTAWQSSLKKHVKIHTGDEYQCKECSYKTVWQNNLKNHEKSHAGVQYKCKECDYKTTWQSSLWKHVKIHTGDIYKCKECDYKTPWKYSLKLHIKRHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-