Lyun000042.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:521166-523319[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.00042 0.0059 17.1 2.7 1 23 87 109 87 109 0.97
2 21 0.0002 0.0028 18.1 1.4 1 23 119 141 119 141 0.99
3 21 5.5e-05 0.00077 19.9 1.5 1 23 146 168 146 168 0.99
4 21 0.0001 0.0015 19.0 0.7 1 23 173 195 173 195 0.99
5 21 0.00026 0.0037 17.7 2.2 1 23 200 222 200 222 0.99
6 21 0.0027 0.038 14.6 0.8 1 23 227 249 227 249 0.99
7 21 0.0048 0.068 13.8 1.0 1 23 254 276 254 276 0.99
8 21 0.0003 0.0042 17.6 1.9 1 23 281 303 281 303 0.99
9 21 0.00056 0.0079 16.7 0.5 1 23 308 330 308 330 0.97
10 21 0.0033 0.046 14.3 0.4 1 23 335 357 335 357 0.99
11 21 0.007 0.099 13.3 1.0 1 23 375 397 375 397 0.99
12 21 0.0003 0.0042 17.6 1.9 1 23 402 424 402 424 0.99
13 21 0.00056 0.0079 16.7 0.5 1 23 429 451 429 451 0.97
14 21 0.0033 0.046 14.3 0.4 1 23 456 478 456 478 0.99
15 21 0.0063 0.09 13.4 1.0 1 23 483 505 483 505 0.99
16 21 0.0058 0.083 13.5 0.8 1 23 510 532 510 532 0.99
17 21 0.0056 0.08 13.6 1.3 1 23 537 559 537 559 0.99
18 21 0.0035 0.05 14.2 0.6 1 23 564 586 564 586 0.99
19 21 2.7e-05 0.00039 20.8 1.6 1 23 591 613 591 613 0.99
20 21 9.7e-05 0.0014 19.1 1.8 1 23 618 640 618 640 0.99
21 21 0.00031 0.0044 17.5 0.5 1 23 645 667 645 667 0.97

Sequence Information

Coding Sequence
atggatGTTGATTCGATAGAAAGTTCTGCAATAAAATccgaagtgattttaacagaaacatttgcgttttttggaaaatatgaagattgtggTGAGAgtcaaaaaccaaaaacagaACTAGCAGTTTATGAAGAAtggtttaaatgtaaaaaagaagATTCTGTAGAACACATAGACATACCCGCTACTCTGATTCAATGCAGcaatgaatgtgattttaagaTGCCAGAGCTCAAAACTTCAAGAATTGGCAATcaatacatttgtaatgaatgtactTATAAGACATTCttcaaaagtaatctaaagagacatataaaaattcataaaggtaATGACGTTACctgtgacaaatataagtgtaaagaatgtaattatgaaacagtgcagaaatatcaactaaaggaacatgtcaaaattcatgcaCAGGATAAATACAAGTGTaccgaatgtgattataaaacagcacgCAAAAGGAGTCTAAAttcacacatcaaaattcatacaggtcatgaatacaagtgtaaagaatgtgattataaagcaaTACGCAAGAGGAGTCTAAAtgcacacatcaaaattcatacaggtcatgaatacaagtgtaaacaatgtgattataaaacaatgcgCAAGAGGAGTCTAAAtgcacacatcaaaattcatacaggtaatgaatacaagtgtaaagaatgtgactataaaacagtgtggaaaaagcAACTAAAtgcacacatcaaaattcatacaggtgatgaatataagtgcaaagaatgtgattataaaacagtgtggaactATCAACTAAAGGATCACATCAAAATACATACGggggatgaatataagtgtaaagaatgtgattataaaacagtgcagaaatttcaactaaaggaacatgtaaaaattcatacaggtgatgaatataagtgtatagaatgtgattataaaacagtgcgcaAAAGTAGTCTAAAtgcacatatcaaaattcatacaggtaatgaatacaagtgtgacgaatgtgattataaaacagtgtggaaaaagcAACTAAATGCccacattaaaattcatacaggtgatgaatataagtgtaaagaatgcgattataaaacggggaatgaatataagtgcaaagaatgtgattataaaacagtgtggaaaaatcaactaaaggaacacattaaaatacatacaggggatgaatataagtgtaaagaatgtgattataaaacagtgcagaaatttcaactaaaggaacatgtaaaaattcatacaggtgatgaatataagtgtatagaatgtgattataaaacagtgcgcaAAAGTAGTCTAAAtgcacatatcaaaattcatacaggtaatgaatacaagtgtgacgaatgtgattataaaacagtgtggaaaaagcAACTAAATGCccacattaaaattcatacaggtgatgaatataagtgtaaagaatgcgattataaaacggtgtggaaaaaacaactaaatgaacacatcaaaattcatacaggggatgaatataagtgtaaagaatgtaattataaaacagtgtggaaaaatcaactaaatgcgcacatcaaaattcatacaggggatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaaacaactaaaggaacacatcaaaattcatacaggggatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcaactaaatgcgcacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtacggaactatcaactaaaggaacacattaaaatacatacaggggatgaatataagtgtaaagaatgtgattataaaacagtgcaaaaatatcaactaaaggaacatgtcaaaattcatacaggggatgaatataaatgtatagaatgtgattataaaacagtgcggagaAGTAATCTAAAtgcacacatcaaaattcatacaggtaatgcaAGAGTAAAGAAtctgattataaaacagtgcggaaaaatcaactaa
Protein Sequence
MDVDSIESSAIKSEVILTETFAFFGKYEDCGESQKPKTELAVYEEWFKCKKEDSVEHIDIPATLIQCSNECDFKMPELKTSRIGNQYICNECTYKTFFKSNLKRHIKIHKGNDVTCDKYKCKECNYETVQKYQLKEHVKIHAQDKYKCTECDYKTARKRSLNSHIKIHTGHEYKCKECDYKAIRKRSLNAHIKIHTGHEYKCKQCDYKTMRKRSLNAHIKIHTGNEYKCKECDYKTVWKKQLNAHIKIHTGDEYKCKECDYKTVWNYQLKDHIKIHTGDEYKCKECDYKTVQKFQLKEHVKIHTGDEYKCIECDYKTVRKSSLNAHIKIHTGNEYKCDECDYKTVWKKQLNAHIKIHTGDEYKCKECDYKTGNEYKCKECDYKTVWKNQLKEHIKIHTGDEYKCKECDYKTVQKFQLKEHVKIHTGDEYKCIECDYKTVRKSSLNAHIKIHTGNEYKCDECDYKTVWKKQLNAHIKIHTGDEYKCKECDYKTVWKKQLNEHIKIHTGDEYKCKECNYKTVWKNQLNAHIKIHTGDEYKCKECDYKTVWKKQLKEHIKIHTGDEYKCKECDYKTVWKNQLNAHIKIHTGDEYKCKECDYKTVRNYQLKEHIKIHTGDEYKCKECDYKTVQKYQLKEHVKIHTGDEYKCIECDYKTVRRSNLNAHIKIHTGNARVKNLIIKQCGKIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-