Lyun004867.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000835.1:916908-921638[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 45 1.4 20 6.0 0.7 1 21 66 86 66 87 0.94
2 45 0.58 8.3 7.2 0.9 1 23 161 183 161 183 0.98
3 45 0.00018 0.0025 18.3 2.2 1 23 188 210 188 210 0.99
4 45 2.3 32 5.4 1.0 1 23 215 237 215 237 0.93
5 45 0.065 0.92 10.2 1.6 1 23 242 264 242 264 0.99
6 45 0.00018 0.0025 18.3 2.2 1 23 269 291 269 291 0.99
7 45 2.3 32 5.4 1.0 1 23 296 318 296 318 0.93
8 45 1.1 15 6.4 1.5 1 23 323 345 323 345 0.96
9 45 0.05 0.71 10.6 0.5 5 23 360 378 358 378 0.96
10 45 2 28 5.5 1.1 1 23 383 405 383 405 0.94
11 45 0.58 8.3 7.2 0.9 1 23 410 432 410 432 0.98
12 45 0.00018 0.0025 18.3 2.2 1 23 437 459 437 459 0.99
13 45 2.5 36 5.2 1.1 1 23 464 486 464 486 0.91
14 45 0.065 0.92 10.2 1.6 1 23 491 513 491 513 0.99
15 45 0.00018 0.0025 18.3 2.2 1 23 518 540 518 540 0.99
16 45 1.5 21 5.9 0.9 1 23 545 567 545 567 0.91
17 45 0.89 13 6.6 1.1 1 23 572 594 572 594 0.96
18 45 0.00012 0.0017 18.9 2.5 1 23 599 621 599 621 0.99
19 45 2 28 5.5 1.1 1 23 626 648 626 648 0.94
20 45 0.064 0.9 10.2 0.5 5 23 654 672 652 672 0.96
21 45 2 28 5.5 1.1 1 23 677 699 677 699 0.94
22 45 0.00014 0.002 18.6 1.1 1 23 704 726 704 726 0.99
23 45 0.00031 0.0043 17.5 1.8 1 23 731 753 731 753 0.99
24 45 0.00031 0.0043 17.5 1.8 1 23 758 780 758 780 0.99
25 45 2.2 31 5.4 0.7 1 23 785 807 785 807 0.96
26 45 0.37 5.3 7.8 0.9 1 23 845 867 845 867 0.98
27 45 3.6e-05 0.0005 20.5 2.5 1 23 872 894 872 894 0.99
28 45 1.2 17 6.2 0.5 1 23 899 921 899 921 0.93
29 45 0.78 11 6.8 0.9 1 23 926 948 926 948 0.96
30 45 3.6e-05 0.0005 20.5 2.5 1 23 953 975 953 975 0.99
31 45 2 28 5.5 1.1 1 23 994 1016 994 1016 0.94
32 45 0.064 0.9 10.2 0.5 5 23 1022 1040 1020 1040 0.96
33 45 2 28 5.5 1.1 1 23 1045 1067 1045 1067 0.94
34 45 0.00014 0.002 18.6 1.1 1 23 1072 1094 1072 1094 0.99
35 45 0.00031 0.0043 17.5 1.8 1 23 1099 1121 1099 1121 0.99
36 45 0.00031 0.0043 17.5 1.8 1 23 1126 1148 1126 1148 0.99
37 45 2.2 31 5.4 0.7 1 23 1153 1175 1153 1175 0.96
38 45 3.6e-05 0.0005 20.5 2.5 1 23 1180 1202 1180 1202 0.99
39 45 1.2 17 6.2 0.5 1 23 1207 1229 1207 1229 0.93
40 45 0.19 2.7 8.8 0.6 1 20 1234 1253 1234 1254 0.95
41 45 3.6e-05 0.0005 20.5 2.5 1 23 1257 1279 1257 1279 0.99
42 45 1.2 17 6.2 0.5 1 23 1284 1306 1284 1306 0.93
43 45 1 14 6.5 0.7 1 23 1311 1333 1311 1333 0.95
44 45 0.00069 0.0097 16.4 1.9 1 23 1338 1360 1338 1360 0.99
45 45 1.3 18 6.1 0.9 5 21 1369 1385 1368 1386 0.92

Sequence Information

Coding Sequence
ATGGATgtcgattttaatgaaaataatccaataaaaactgAAATGATTGTGAaggaaacattttcattttgtgaaaaatatgaagATAATGCGAGTGGAAAGTTGAAAACAGAGGGGGTGGATTtcgaagaatcttttaaatgcaaGGAAGAATATAAACCACAGATCAATGTACACGACGTACTTATATCTCAATAtaattgtaatgaatgtaattttattacaacggaAAAAGACCATCAAAcagatcatttaaaaattactaaaaatgttcaatatttttgtaaggaatgtaactttaaCACCTGGTTGTCATGTTCGATAAAAGAACATTTCAGGATACATAACAGGGTTGGCTGTagacatattaataaaaattgtatcttTGAGGCTCCACAAATTTTCTCCTTGATACCACAGTTTAAAACATCTTTGAGATTGAGGGTAGAGGAACATGCAAATATTCATACTGATGAtaagtataagtgtaaagaatgcgagtataaaacagtttggaaaaaTAGActaattgaacatttaagaatgcatacaggtgatgaatataagtgtaaagagtgtaactataaaacagtgagaacagatagtctaaagaaacatataaaaattcatactggtgataaatataagtgtaaggattgcgattttaaaacaatttggaaACAGAGACTAATGgatcatgtaaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtttggaaaaaTAGACTAATCAAACATTTAAGAatgcatacaggtgatgaatataagtgtaaggaatgtaactataaaacagtgagaacagatagtctaaagaaacatataaaaattcatactggtgataaatataagtgtaaggattgcgattttaaaacaatttggaaACAGAGACTAATGgatcatgtaaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtttggaaacaGAGACTAATGGATCATCGAAAAATTCATActgtgatgaatataagtgtaaggaatgtaactataaaacaagaatgtaactataaaacagtgagaagCGATACTCTAAAGAAAcatctgaaaattcatactggtgataaatataagtgtaaggattgcgattttaaaacaatttggaaACGGAGACTAATGgatcatgtaaaaattcatactgatgataagtataagtgtaaagaatgcgagtataaaacagtttggaaaaaTAGActaattgaacatttaagaatgcatacaggtgatgaatataagtgtaaagagtgtaactataaaacagtgagaacagatagtctaaagaaacatataaaaattcatactggtgataaatataagtgtaaggattgCAATTATAGAACAATTTGGAAACAGAGACTAATGGatcatgaaaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtttggaaaaaTAGACTAATCAAACATTTAAGAatgcatacaggtgatgaatataagtgtaaagagtgtaactataaaacagtgagaacagatagtctaaagaaacatataaaaattcatactggtgataaatataagtgtaaggattgCGATTATAGAACAATTTGGAAACAGAGACTAATGGatcatgaaaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtttggaaacaGAGACTAATCGAACATcgaaaaattcatactggcgatgaatataaatgtaaggaatgtaactataaaacagtgagaagCGATACTCTAAAGAAAcatctgaaaattcatactggtgatgaatataagtgtaaggattgcgattttaaaacaatttggaaACGGAGACTAATGgatcatgtaaaaattcatactggtgatgaatataaatgtaactataaaacagtgagaagCGATACTCTAAAGAAAcatctgaaaattcatactggtgatgaatataagtgtaaggattgcgattttaaaacaatttggaaACGGAGACTAATGgatcatgtaaaaattcatactggtgatgaatataagtgtaacgaatgtaacTACAAAACAGTGAGAAAAGGTGGTCTAAACAAAcatctgaaaattcatactggtgatgaatataagtgtagagaatgtaactataaaacagcgAGAAAAGGTAGTCTAAACAAAcatctgaaaattcatactggagatgaatataagtgtagagaatgtaactataaaacagcgAGAAAAGGTAGTCTAAACAAAcatctgaaaattcatactggtgatgaatatatgtGTAAGGATTGCAATTTTAAAACGATTTGGAAACAGAGACTAATCgaacatttaagaattcatactggtgatgaatataagtgtaaagagtgtaactataaaacagattgcgattttaaaacaatttggaaACAGAGACTAATGgatcatgtaaaaattcatactggtgatgaatataaatgtaaggaatgtaactataaaacagtttggaaacaGAGACTAATCgaacatttaagaattcatactggtgatgaatataagtgtaaagagtgtaactataaaacagtgagaaaagatagtctaaagaaacatataaaaattcatactggtgataaatataagtgtaaggattgCGATTAtgaaacaatatggaaacagagACTAATGgatcatgtaaaaattcacactggtgatgaatataagtgtaatgaatgtgattataaaacagtttggaaacaGAGACTAATCGAACATCGAAAAATTCATAccggcgatgaatataagtgtaaggaatgtaactataaaacagtgagaaaagatagtctaaagaaacatataaaaattcatactgtgagaatCGATACTCTAAAGAAAcatctgaaaattcatactgatgttgaatataagtgtaaggattgcgattttaaaacaatttggaaACGGAGACTAATGgatcatgtaaaaattcatactggtgatgaatataaatgtaactataaaacagtgagaagCGATACTCTAAAGAAAcatctgaaaattcatactggtgatgaatataagtgtaaggattgcgattttaaaacaatttggaaACGGAGACTAATGgatcatgtaaaaattcatactggtgatgaatataagtgtaacgaatgtaacTACAAAACAGTGAGAAAAGGTGGTCTAAACAAAcatctgaaaattcatactggtgatgaatataagtgtagagaatgtaactataaaacagcgAGAAAAGGTAGTCTAAACAAAcatctgaaaattcatactggagatgaatataagtgtagagaatgtaactataaaacagcgAGAAAAGGTAGTCTAAACAAAcatctgaaaattcatactggtgatgaatatatgtGTAAGGATTGCAATTTTAAAACGATTTGGAAACAGAGACTAATCgaacatttaagaattcatactggtgatgaatataagtgtaaagagtgtaactataaaacagtgagaaaagatagtctaaagaaacatataaaaattcatactggtgataaatataagtgtaaggattgCGATTAtgaaacaatatggaaacagagACTAATGgatcatgtaaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacaAGACTAATCgaacatttaagaattcatactggtgatgaatataagtgtaaagagtgtaactataaaacagtgagaaaagatagtctaaagaaacatataaaaattcatactggtgataaatataagtgtaaggattgCGATTAtgaaacaatatggaaacagagACTAATGgatcatgtaaaaattcacactggtgatgaatataagtgtaaggattgCGATTAtgaaacaatatggaaacagagACTAATCGAACATCGAAAAATTCATAccggcgatgaatataagtgtaaggaatgtaactataaaacagtgagaatCGATACTCTAAAGAAAcatctgaaaattcatactgatgttGAATATAAGTAtaagaaatgtaactataaaacaatgAGAAAACacaatctaaaggaacatataaaaattcgttGCGGTGATGAATAG
Protein Sequence
MDVDFNENNPIKTEMIVKETFSFCEKYEDNASGKLKTEGVDFEESFKCKEEYKPQINVHDVLISQYNCNECNFITTEKDHQTDHLKITKNVQYFCKECNFNTWLSCSIKEHFRIHNRVGCRHINKNCIFEAPQIFSLIPQFKTSLRLRVEEHANIHTDDKYKCKECEYKTVWKNRLIEHLRMHTGDEYKCKECNYKTVRTDSLKKHIKIHTGDKYKCKDCDFKTIWKQRLMDHVKIHTGDEYKCKECDYKTVWKNRLIKHLRMHTGDEYKCKECNYKTVRTDSLKKHIKIHTGDKYKCKDCDFKTIWKQRLMDHVKIHTGDEYKCKECDYKTVWKQRLMDHRKIHTVMNISVRNVTIKQECNYKTVRSDTLKKHLKIHTGDKYKCKDCDFKTIWKRRLMDHVKIHTDDKYKCKECEYKTVWKNRLIEHLRMHTGDEYKCKECNYKTVRTDSLKKHIKIHTGDKYKCKDCNYRTIWKQRLMDHEKIHTGDEYKCKECDYKTVWKNRLIKHLRMHTGDEYKCKECNYKTVRTDSLKKHIKIHTGDKYKCKDCDYRTIWKQRLMDHEKIHTGDEYKCKECDYKTVWKQRLIEHRKIHTGDEYKCKECNYKTVRSDTLKKHLKIHTGDEYKCKDCDFKTIWKRRLMDHVKIHTGDEYKCNYKTVRSDTLKKHLKIHTGDEYKCKDCDFKTIWKRRLMDHVKIHTGDEYKCNECNYKTVRKGGLNKHLKIHTGDEYKCRECNYKTARKGSLNKHLKIHTGDEYKCRECNYKTARKGSLNKHLKIHTGDEYMCKDCNFKTIWKQRLIEHLRIHTGDEYKCKECNYKTDCDFKTIWKQRLMDHVKIHTGDEYKCKECNYKTVWKQRLIEHLRIHTGDEYKCKECNYKTVRKDSLKKHIKIHTGDKYKCKDCDYETIWKQRLMDHVKIHTGDEYKCNECDYKTVWKQRLIEHRKIHTGDEYKCKECNYKTVRKDSLKKHIKIHTVRIDTLKKHLKIHTDVEYKCKDCDFKTIWKRRLMDHVKIHTGDEYKCNYKTVRSDTLKKHLKIHTGDEYKCKDCDFKTIWKRRLMDHVKIHTGDEYKCNECNYKTVRKGGLNKHLKIHTGDEYKCRECNYKTARKGSLNKHLKIHTGDEYKCRECNYKTARKGSLNKHLKIHTGDEYMCKDCNFKTIWKQRLIEHLRIHTGDEYKCKECNYKTVRKDSLKKHIKIHTGDKYKCKDCDYETIWKQRLMDHVKIHTGDEYKCKECDYKTRLIEHLRIHTGDEYKCKECNYKTVRKDSLKKHIKIHTGDKYKCKDCDYETIWKQRLMDHVKIHTGDEYKCKDCDYETIWKQRLIEHRKIHTGDEYKCKECNYKTVRIDTLKKHLKIHTDVEYKYKKCNYKTMRKHNLKEHIKIRCGDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-