Lyun017270.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002352.1:3991884-3996533[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 44 0.34 4.8 8.0 0.0 1 21 68 88 68 89 0.95
2 44 4.3 61 4.5 0.7 1 23 95 117 95 117 0.88
3 44 2.8 40 5.1 3.4 1 23 150 172 150 172 0.97
4 44 0.035 0.5 11.0 0.5 1 23 177 199 177 199 0.95
5 44 1.5 21 5.9 5.5 1 23 231 253 231 253 0.96
6 44 0.021 0.3 11.7 0.5 1 23 258 280 258 280 0.96
7 44 0.0017 0.024 15.2 0.8 1 23 285 307 285 307 0.99
8 44 1.1 16 6.3 0.4 2 23 313 334 312 334 0.96
9 44 0.27 3.8 8.3 4.2 1 23 339 361 339 361 0.98
10 44 0.0093 0.13 12.9 1.1 1 23 366 388 366 388 0.99
11 44 1.2 17 6.2 0.1 5 23 397 415 396 415 0.93
12 44 0.25 3.5 8.4 3.0 1 23 420 442 420 442 0.95
13 44 2.7e-05 0.00038 20.9 0.8 1 23 469 491 469 491 0.99
14 44 0.17 2.4 8.9 3.6 1 23 496 518 496 518 0.97
15 44 0.021 0.3 11.7 0.5 1 23 523 545 523 545 0.96
16 44 0.0017 0.024 15.2 0.8 1 23 550 572 550 572 0.99
17 44 1.1 16 6.3 0.4 2 23 578 599 577 599 0.96
18 44 0.27 3.8 8.3 4.2 1 23 604 626 604 626 0.98
19 44 0.02 0.28 11.8 1.5 1 23 631 653 631 653 0.99
20 44 0.0016 0.022 15.3 0.5 1 23 658 680 658 680 0.99
21 44 0.25 3.5 8.4 3.0 1 23 685 707 685 707 0.95
22 44 2.7e-05 0.00038 20.9 0.8 1 23 734 756 734 756 0.99
23 44 0.17 2.4 8.9 3.6 1 23 761 783 761 783 0.97
24 44 0.077 1.1 10.0 1.2 1 23 788 810 788 810 0.96
25 44 0.00021 0.003 18.0 0.6 1 23 815 837 815 837 0.99
26 44 1.2 18 6.2 0.3 2 23 843 864 842 864 0.96
27 44 0.0052 0.074 13.7 1.0 1 23 896 918 896 918 0.99
28 44 0.00037 0.0052 17.3 1.0 1 23 923 945 923 945 0.99
29 44 0.0016 0.022 15.3 0.5 1 23 950 972 950 972 0.99
30 44 0.25 3.5 8.4 3.0 1 23 977 999 977 999 0.95
31 44 2.7e-05 0.00038 20.9 0.8 1 23 1026 1048 1026 1048 0.99
32 44 0.17 2.4 8.9 3.6 1 23 1053 1075 1053 1075 0.97
33 44 0.00021 0.003 18.0 0.6 1 23 1107 1129 1107 1129 0.99
34 44 1.2 18 6.2 0.3 2 23 1135 1156 1134 1156 0.96
35 44 0.0052 0.074 13.7 1.0 1 23 1189 1211 1189 1211 0.99
36 44 0.17 2.4 8.9 3.1 1 23 1216 1238 1216 1238 0.95
37 44 0.17 2.4 8.9 3.1 1 23 1265 1287 1265 1287 0.95
38 44 0.17 2.4 8.9 3.6 1 23 1292 1314 1292 1314 0.97
39 44 0.12 1.7 9.4 1.6 1 23 1319 1341 1319 1341 0.96
40 44 0.00021 0.003 18.0 0.6 1 23 1346 1368 1346 1368 0.99
41 44 1.2 18 6.2 0.3 2 23 1374 1395 1373 1395 0.96
42 44 0.0052 0.074 13.7 1.0 1 23 1428 1450 1428 1450 0.99
43 44 0.0043 0.061 13.9 2.0 2 23 1456 1477 1455 1477 0.96
44 44 0.12 1.7 9.4 4.0 1 23 1482 1504 1482 1504 0.95

Sequence Information

Coding Sequence
ATGGATGTCGATTATAATCAAAGTAATCTGATAAAATCTGAAGTAATTGTAAAGCAAACATTTTCGTATTCTGGAAAACATGAAGattatggaaaagaagaattaaaaaaggagCCAGTGGATTTTGAAGCATCTGTTAAATGCGAGGTGGAAGCTTATCCTCTCGAGCACACTGATATACTTTGTGCAtctatatgtacatacatttgtaatgaatgtgattttatTACAACGGCAAATgattctctaatagaacatttaaaaatatgtagcaATGTTCATTACTCTTGTAACATATGTAACTTTAATACCCAGTTGGAGTTTTCGATAAAAGAACATTTGAGAATTCATAACACTGTTGATGCTGgatatattactaaaaaatgtagttttaaggCGCCACAAATTTTACCGGTACaattaaaaactgcaaaaagCGGCGATGAATATATTtgtaagaaatgtgattataaaacaccatgggaACATCATTTCAAAGCTCATGTAAAAGTTCATAGtgataatgaatataagtgtaatgaatgtgactttaaagcaCTGAGGCAAAAGGATTTAGAAATGCACATGAACATTCATACAGGTAGTGAATATAAGTTTagtgaatgtgactataaaacagtgatgAAACATATGCTAAAAATGCATAAGAACATTCGTACTAATGAGGAacataagtgtaatgaatgtgactttaaaacactTAGGAAATGTAGTTTAATaatgcatatgaaaattcatacacgtgataaatataagtgtaatcaATGTGACTATAAAGCATTGAGGAAAAGTGATTTAGTAAAACATATAGAAATTCATACGAGTAATGTATATAAGTGTAgcgaatgtgactttaaaacatcAAGAAAAGGTAGTTTAGGAGCGCATACGAAAGTTCATACGGGTAATGCAAATAAGTGTTATGAATGTGCCTTTAAAGCAGTGAccgaaaatgatttaaaaatgcatatgaaaattcatacgaGTAATGAATATCGATGtaataaatgtgattataaaacagagTTAAAACATATGCTAAAACTGCATAAGAACATTCATATTGATAAGATATATAAGTGTagtgaatgtgactttaaagcaATGAGGAAATATGATTTCGAAATGCACATGAACATTCATACAGGTAGTGAATATAAGTTTagtgaatgtgactttaaagcaATGAGGAAATATGATTTAGAaatgcatatgaaaattcatacgaGTAATGTATATAAGTGTagtgaatgtgactttaaagcattaagagaatgtaatttaaaaactcatatgaaaattcatcttggtaatgaatgtgactacaaaacagtgATGAGACATatgctaaaaatgcataaaaacgTTCATACTGAtaaggaatataagtgtaatgaatgtgactatacaACAATGAGCAAAGGTAATTTAACAattcatatgaaaattcatactgataatcaatataagtgtaatgaatgtgactttaaaacactTAGGAAATGTAGTTTAATaatgcatatgaaaattcatacacgtgataaatataagtgtaatcaATGTGACTATAAAGCATTGAGGAAAAGTGATTTAGTAAAACATATAGAAATTCATACGAGTAATGTATATAAGTGTAgcgaatgtgactttaaaacatcAAGAAAAGGTAGTTTAGGAGCGCATACGAAAGTTCATACGGGTAATGCAAATAAGTGTTATGAATGTGCCTTTAAAGCAGTGAccgaaaatgatttaaaaatgcatatgaaaattcatacgaGTAATGAATATCGATGtaataaatgtgattataaaacagagTTAAAACATATGCTAAAACTGCATAAGAACATTCATATTGATAAGATATATAAGTGTagtgaatgtgactttaaagcaATGAGGAAATATGATTTCGAAATGCATATCAAAAgtcatactggtaatgaatataagtgtgacgAATGTGAATTTAAAGCAGTGAGGAAATATGATTTAGAaatgcatatgaaaattcatactgataataattataagtgtagtgaatgtgactttaaagcattaagagaatgtaatttaaaaactcatatgaaaattcatcttggtaatgaatgtgactacaaaacagtgATGAGACATatgctaaaaatgcataaaaacgTTCATACTGAtaaggaatataagtgtaatgaatgtgactatacaACAATGAGCAAAGGTAATTTAACAattcatatgaaaattcatactgataatcaatataagtgtaatgaatgtgactttaaaacactTAGGAAATGTAGTTTAATaatgcatatgaaaattcatacgaGTAATGTATATAAGTGTagtgaatgtgactataaagcattgacaaaatattatttacaaaaacatttggaCATTCATTCAAGTAATATATATAAGTGTAgcgaatgtgactttaaaacatcAAGAAAAGGTAGTTTAGGAGCGCATATGAAAGTTCATACGGGTAATGCAAATAAGTGTTATGAATGTGCGTTTAAAGCAGTTACAGAAAATGATTTAAGaatgcatatgaaaattcatacgaGTAATGAATATCGATGTAataaatgtgactataaaacagagTTGAAATGTATCCTAAATctgcataaaaaaattcatattgatGAGGTATATAAGTGTTATGAATGTGACTTTAGAGCAATGAGGAAATATGATTTAGAaatgcatatgaaaattcatactgataatcaatataagtgtaatgaatgtgactttaaagcaGTGAGGAAATATGATTTAGAAATGCATATGAAAAGTCATACTGgtattgaatataagtgtgacgAATGTGAATTTAAAGCAGTGAGGAAATATGATTTAGAaatgcatatgaaaattcatactgataataattataagtgtagtgaatgtgactttaaagcattaagagaatgtaatttaaaaactcatatgaaaattcatcttggtaatgaatgtgactacaaaacagtgATGAGACATatgctaaaaatgcataaaaacgTTCATACTGAtaaggaatataagtgtaatgaatgtgactatacaACAATGAGCAAAGGTAATTTAACAattcatatgaaaattcatactgataatcaatataagtgtaatgaatgtgactttaaaacactTAGGAAATGTAGTTTAATaatgcatatgaaaattcatacaggtagtGAATATAAGTTTagtgaatgtgactataaagcattgacaaaatattatttacaaaaacatttggaCATTCATTCAAGTAATATATATAAGTGTAgcgaatgtgactttaaaacatcAAGAAAAGGTAGTTTAGGAGCGCATATGAAAGTTCATACGGGTAATGCAAATAAGTGTTATGAATGTGCGTTTAAAGCAGTTACAGAAAATGATTTAAGaatgcatatgaaaattcatacaggtagtGAATATTATAGGTGTAataaatgtgactataaaacagagTTGAAATGTATCCTAAATctgcataaaaaaattcatattgatGAGGTATATAAGTGTTATGAATGTGACTTTAGAGCAATGAGGAAATATGATTTAGAaatgcatatgaaaattcatactgataatcaatataagtgtaatgaatgtgactttaaagcattaagagaatgtaatttaaaaactcatatgaaaattcatcttggtaatgaatgtgactacaaaacagtgATGAGACATatgctaaaaatgcataaaaacgTTCATACTGATaatcaatataagtgtaatgaatgtgactttaaagcattaagagaatgtaatttaaaaactcatatgaaaattcatactgataatcaatataagtgtaatgaatgtgactttaaaacactTAGGAAATGTAGTTTAATaatgcatatgaaaattcatagacgtaataaatataagtgtaatcaatgtgactataaagcattgacaaaatattatttacaaaaacatttggaCATTCATTCAAGTAATATATATAAGTGTAgcgaatgtgactttaaaacatcAAGAAAAGGTAGTTTAGGAGCGCATATGAAAGTTCATACGGGTAATGCAAATAAGTGTTATGAATGTGCGTTTAAAGCAGTTACAGAAAATGATTTAAGaatgcatatgaaaattcatacaggtagtGAATATTATAGGTGTAataaatgtgactataaaacagagTTGAAATGTATCCTAAATctgcataaaaaaattcatattgatGAGGTATATAAGTGTTATGAATGTGACTTTAGAGCAATGAGGAAATATGATTTAGAAATGcacatgaaaattcacactggtacTGAATGTAAGTGTgatgaatgtgactttaaagcaGTGAGGAAATATGATTTAGAAATGCATATGAAAATGCATACtggtaataaatataagtgtagtgaatgtgactttaaagcattaagaaagtgtaatttaaaaactcatatgaaaattcattcTGCAAATGAATATAACTACGGGCGTCCTTTCTTATCACGCAACTTTGGGCATGGTGTATTCTATACACCACTCCAATAA
Protein Sequence
MDVDYNQSNLIKSEVIVKQTFSYSGKHEDYGKEELKKEPVDFEASVKCEVEAYPLEHTDILCASICTYICNECDFITTANDSLIEHLKICSNVHYSCNICNFNTQLEFSIKEHLRIHNTVDAGYITKKCSFKAPQILPVQLKTAKSGDEYICKKCDYKTPWEHHFKAHVKVHSDNEYKCNECDFKALRQKDLEMHMNIHTGSEYKFSECDYKTVMKHMLKMHKNIRTNEEHKCNECDFKTLRKCSLIMHMKIHTRDKYKCNQCDYKALRKSDLVKHIEIHTSNVYKCSECDFKTSRKGSLGAHTKVHTGNANKCYECAFKAVTENDLKMHMKIHTSNEYRCNKCDYKTELKHMLKLHKNIHIDKIYKCSECDFKAMRKYDFEMHMNIHTGSEYKFSECDFKAMRKYDLEMHMKIHTSNVYKCSECDFKALRECNLKTHMKIHLGNECDYKTVMRHMLKMHKNVHTDKEYKCNECDYTTMSKGNLTIHMKIHTDNQYKCNECDFKTLRKCSLIMHMKIHTRDKYKCNQCDYKALRKSDLVKHIEIHTSNVYKCSECDFKTSRKGSLGAHTKVHTGNANKCYECAFKAVTENDLKMHMKIHTSNEYRCNKCDYKTELKHMLKLHKNIHIDKIYKCSECDFKAMRKYDFEMHIKSHTGNEYKCDECEFKAVRKYDLEMHMKIHTDNNYKCSECDFKALRECNLKTHMKIHLGNECDYKTVMRHMLKMHKNVHTDKEYKCNECDYTTMSKGNLTIHMKIHTDNQYKCNECDFKTLRKCSLIMHMKIHTSNVYKCSECDYKALTKYYLQKHLDIHSSNIYKCSECDFKTSRKGSLGAHMKVHTGNANKCYECAFKAVTENDLRMHMKIHTSNEYRCNKCDYKTELKCILNLHKKIHIDEVYKCYECDFRAMRKYDLEMHMKIHTDNQYKCNECDFKAVRKYDLEMHMKSHTGIEYKCDECEFKAVRKYDLEMHMKIHTDNNYKCSECDFKALRECNLKTHMKIHLGNECDYKTVMRHMLKMHKNVHTDKEYKCNECDYTTMSKGNLTIHMKIHTDNQYKCNECDFKTLRKCSLIMHMKIHTGSEYKFSECDYKALTKYYLQKHLDIHSSNIYKCSECDFKTSRKGSLGAHMKVHTGNANKCYECAFKAVTENDLRMHMKIHTGSEYYRCNKCDYKTELKCILNLHKKIHIDEVYKCYECDFRAMRKYDLEMHMKIHTDNQYKCNECDFKALRECNLKTHMKIHLGNECDYKTVMRHMLKMHKNVHTDNQYKCNECDFKALRECNLKTHMKIHTDNQYKCNECDFKTLRKCSLIMHMKIHRRNKYKCNQCDYKALTKYYLQKHLDIHSSNIYKCSECDFKTSRKGSLGAHMKVHTGNANKCYECAFKAVTENDLRMHMKIHTGSEYYRCNKCDYKTELKCILNLHKKIHIDEVYKCYECDFRAMRKYDLEMHMKIHTGTECKCDECDFKAVRKYDLEMHMKMHTGNKYKCSECDFKALRKCNLKTHMKIHSANEYNYGRPFLSRNFGHGVFYTPLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-