Lyun016598.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002264.1:993327-996792[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 0.35 4.9 7.9 2.3 1 23 85 107 85 107 0.98
2 36 1e-05 0.00015 22.2 2.3 1 23 112 134 112 134 0.99
3 36 0.011 0.15 12.6 2.6 1 23 139 161 139 161 0.99
4 36 0.013 0.18 12.5 0.4 1 23 166 188 166 188 0.98
5 36 0.29 4.1 8.2 1.9 1 23 193 215 193 215 0.98
6 36 0.0013 0.018 15.6 0.8 1 23 220 242 220 242 0.98
7 36 0.018 0.25 12.0 0.8 1 23 247 269 247 269 0.98
8 36 0.0009 0.013 16.1 1.0 1 23 274 296 274 296 0.99
9 36 0.77 11 6.8 3.1 2 23 302 323 301 323 0.97
10 36 0.47 6.7 7.5 1.0 1 23 328 350 328 350 0.97
11 36 4.8e-05 0.00067 20.1 1.3 1 23 355 377 355 377 0.99
12 36 0.063 0.9 10.2 1.8 1 23 382 404 382 404 0.99
13 36 1.9 27 5.6 0.9 1 23 409 431 409 431 0.94
14 36 5e-05 0.00071 20.0 1.5 1 23 436 458 436 458 0.99
15 36 0.036 0.51 11.0 1.4 1 23 463 485 463 485 0.98
16 36 0.61 8.6 7.2 0.4 11 23 515 527 512 527 0.90
17 36 0.011 0.15 12.6 2.6 1 23 532 554 532 554 0.99
18 36 0.013 0.18 12.5 0.4 1 23 559 581 559 581 0.98
19 36 0.29 4.1 8.2 1.9 1 23 586 608 586 608 0.98
20 36 0.0013 0.018 15.6 0.8 1 23 613 635 613 635 0.98
21 36 0.018 0.25 12.0 0.8 1 23 640 662 640 662 0.98
22 36 0.0009 0.013 16.1 1.0 1 23 667 689 667 689 0.99
23 36 0.77 11 6.8 3.1 2 23 695 716 694 716 0.97
24 36 0.47 6.7 7.5 1.0 1 23 721 743 721 743 0.97
25 36 4.8e-05 0.00067 20.1 1.3 1 23 748 770 748 770 0.99
26 36 0.063 0.9 10.2 1.8 1 23 775 797 775 797 0.99
27 36 1.9 27 5.6 0.9 1 23 802 824 802 824 0.94
28 36 5e-05 0.00071 20.0 1.5 1 23 829 851 829 851 0.99
29 36 0.036 0.51 11.0 1.4 1 23 856 878 856 878 0.98
30 36 0.15 2.1 9.1 2.4 1 23 883 905 883 905 0.98
31 36 0.0025 0.036 14.6 1.3 1 23 910 932 910 932 0.99
32 36 0.00031 0.0044 17.5 1.2 1 23 937 959 937 959 0.98
33 36 0.18 2.5 8.9 2.3 1 23 964 986 964 986 0.98
34 36 0.018 0.25 12.0 1.8 1 23 991 1013 991 1013 0.99
35 36 0.0084 0.12 13.0 2.7 1 23 1045 1067 1045 1067 0.98
36 36 0.00058 0.0083 16.7 2.3 1 23 1072 1094 1072 1094 0.98

Sequence Information

Coding Sequence
atggatGTAGATTCTGttgaaaattgtgaaataaaatctGATGTGATTGTAACAGAGACGTTTTCATTCTgtggaaaatatgaagATCGAGATGTTGCCGAATTAAAAACGGAGTTCGTAGACGAATCATTTAAATGTATAGAAGATGATCTGGCAAACCACATGGATACACATTCCAACAGTGAATGTAATCAAAATACAGCAATCAAAAATCTTCCCAGTAAGCAaatgaaaattcacacaggtgttgaatataagtgtaaaaattgtaattataaaacaatatgggaacataatctaaagggacatatcaaaattcatacaggtcatcaatataagtgtaaagattgtgattttaaaactgtacggaaaagtaatctaaagcaacatattaaaattcacacaggtgacatatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaatcaacatgtcaaaattcatacaggtgatgaatataaatgtaatgaatgtgattttaaaactgtatggaaaagtaatctaatacaACATGTCCAAATTCATGGAGGTGATCCAtttaagtgtgaagaatgtgattttaaaacagcgtGGAAATGTAGTCTAATGAaccatatcaaaattcatacaggtgatcaATATAGGTGTAATGAATGTGAATTTAAAACTGTACGAAAAAGTACTCTAATACAACATGTTcaaattcatgcaggtgatcaatttaagtgtaaagaatgtgattttaaaacggcGTGGAAAGGTAGTTTAAAGAaccatatcaaaattcatacaggtgatgaatataggtgtaatgaatgtgaatttaaaactgtacggaaaaatgatttaatgcaacacatcaaaattcatacaggttaccaattgaagtgtaaagaatgtgattttaaaacaaaatgggaATGTAATCTAAAgtcacatatcaaaattcatagaggtaatgaatataagtgtaaagactgtgattttaaaacagtgtggaagGATAGTATAAAGACACATGTGAAAGTCCATAATGTTGAGAAGTATAAGTGTAATGATTGTGATTATGAAACGGTGCAAAAaggtcatctaaaggaacatatcaaaattcataaagttgatgagtataagtgtaaaaactgtgattttaaaacaaaatgggaacgtaatctaaaggaacatatcaaaattcataccggtaatgaatataagtgtaaagaatgtgattttaaaacagtgtggcaaaatAGTATAAGGACACATGTGAAAATCCATACCGGTGAaaagtataagtgtaaagattgtgattatgaAACTGCGCAAAAaggtcatctaaaggaacatatcaaaattcatagaggtgatgagtataagtgtaaaaaatgtgattttcaaactgtatggaaaagtaatctaatgcaacatgttaaaattcatacaggtgacaaatataagtgtggaaattgtgattataaaacaacatgggtgatcaATATaggtgtaatgaatgtgatttttaaaactgtacggaaaagtaatctaaagcaacatattaaaattcacacaggtgacatatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaatcaacatgtcaaaattcatacaggtgatgaatataaatgtaatgaatgtgattttaaaactgtatggaaaagtaatctaatacaACATGTCCAAATTCATGGAGGTGATCCAtttaagtgtgaagaatgtgattttaaaacagcgtGGAAATGTAGTCTAATGAaccatatcaaaattcatacaggtgatcaATATAGGTGTAATGAATGTGAATTTAAAACTGTACGAAAAAGTACTCTAATACAACATGTTcaaattcatgcaggtgatcaatttaagtgtaaagaatgtgattttaaaacggcGTGGAAAGGTAGTTTAAAGAaccatatcaaaattcatacaggtgatgaatataggtgtaatgaatgtgaatttaaaactgtacggaaaaatgatttaatgcaacacatcaaaattcatacaggttaccaattgaagtgtaaagaatgtgattttaaaacaaaatgggaATGTAATCTAAAgtcacatatcaaaattcatagaggtaatgaatataagtgtaaagactgtgattttaaaacagtgtggaagGATAGTATAAAGACACATGTGAAAGTCCATAATGTTGAGAAGTATAAGTGTAATGATTGTGATTATGAAACGGTGCAAAAaggtcatctaaaggaacatatcaaaattcatagaggtgatgagtataagtgtaaaaactgtgattttaaaacaaaatgggaacgtaatctaaaggaacatatcaaaattcataccggtaatgaatataagtgtaaagaatgtgattttaaaacagtgtggcaaaatAGTATAAGGACACATGTGAAAATCCATACCGGTGAaaagtataagtgtaaagattgtgattatgaAACTGCGCAAAAaggtcatctaaaggaacatatcaaaattcatagaggtgatgagtataagtgtaaaaaatgtgattttcaaactgtatggaaaagtaatctaatgcaacatgttaaaattcatacaggtgacaaatataagtgtggaaattgtgattataaaacaacatgggtacataatctaaagaaacatgtcaagattcatacaggtgacgaatataagtgtaaagactgtgattacaaaacaatatggaaatataatctaaaggaccatatcaaaattcatacaggtgatgaatataagtgtgaagaatgcgattttaaaactgtacggaaaagctatctaatgcaacatgtcaaaattcatacaggtgagaaatataagtgtgaaaattgtgattataaaacaacatgggGACATAATCTAACGAAACATGTCaagattcatacaggtgacgaatataagtgtaaagactgtgattacaaaacaatatgggaacataatctaaaggatcatatcaaaattcatacaggtgatggatataagtgtaaagaatgtgattttaaaacagcatgGAGAGCTATTATAAGGGCACATGTGAGAATccatgcaggtgaaaaatatatGTGTAAAAACTGTGCTTATAAAACAGTGTCGAAAAGTCATCTAaatcaacatgtcaaaattcatacaggtgacaaatataagtgtgaatTTTGTGATTATGAAACTACAttgaaaagtaatctaaagagACATGTCAAAAATCATACAGGTGATTAA
Protein Sequence
MDVDSVENCEIKSDVIVTETFSFCGKYEDRDVAELKTEFVDESFKCIEDDLANHMDTHSNSECNQNTAIKNLPSKQMKIHTGVEYKCKNCNYKTIWEHNLKGHIKIHTGHQYKCKDCDFKTVRKSNLKQHIKIHTGDIYKCKECDYKTVWKSHLNQHVKIHTGDEYKCNECDFKTVWKSNLIQHVQIHGGDPFKCEECDFKTAWKCSLMNHIKIHTGDQYRCNECEFKTVRKSTLIQHVQIHAGDQFKCKECDFKTAWKGSLKNHIKIHTGDEYRCNECEFKTVRKNDLMQHIKIHTGYQLKCKECDFKTKWECNLKSHIKIHRGNEYKCKDCDFKTVWKDSIKTHVKVHNVEKYKCNDCDYETVQKGHLKEHIKIHKVDEYKCKNCDFKTKWERNLKEHIKIHTGNEYKCKECDFKTVWQNSIRTHVKIHTGEKYKCKDCDYETAQKGHLKEHIKIHRGDEYKCKKCDFQTVWKSNLMQHVKIHTGDKYKCGNCDYKTTWVINIGVMNVIFKTVRKSNLKQHIKIHTGDIYKCKECDYKTVWKSHLNQHVKIHTGDEYKCNECDFKTVWKSNLIQHVQIHGGDPFKCEECDFKTAWKCSLMNHIKIHTGDQYRCNECEFKTVRKSTLIQHVQIHAGDQFKCKECDFKTAWKGSLKNHIKIHTGDEYRCNECEFKTVRKNDLMQHIKIHTGYQLKCKECDFKTKWECNLKSHIKIHRGNEYKCKDCDFKTVWKDSIKTHVKVHNVEKYKCNDCDYETVQKGHLKEHIKIHRGDEYKCKNCDFKTKWERNLKEHIKIHTGNEYKCKECDFKTVWQNSIRTHVKIHTGEKYKCKDCDYETAQKGHLKEHIKIHRGDEYKCKKCDFQTVWKSNLMQHVKIHTGDKYKCGNCDYKTTWVHNLKKHVKIHTGDEYKCKDCDYKTIWKYNLKDHIKIHTGDEYKCEECDFKTVRKSYLMQHVKIHTGEKYKCENCDYKTTWGHNLTKHVKIHTGDEYKCKDCDYKTIWEHNLKDHIKIHTGDGYKCKECDFKTAWRAIIRAHVRIHAGEKYMCKNCAYKTVSKSHLNQHVKIHTGDKYKCEFCDYETTLKSNLKRHVKNHTGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-