Lyun019303.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002652.1:374530-378598[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.3 4.3 8.1 0.1 1 21 99 119 99 120 0.95
2 27 0.63 8.9 7.1 1.2 1 23 205 227 205 227 0.96
3 27 0.0045 0.064 13.9 2.1 1 23 232 254 232 254 0.97
4 27 3.5e-05 0.0005 20.5 1.8 1 23 259 281 259 281 0.99
5 27 4e-05 0.00057 20.3 1.8 1 23 313 335 313 335 0.99
6 27 0.26 3.7 8.3 1.0 1 23 340 362 340 362 0.97
7 27 7.7e-05 0.0011 19.4 1.3 1 23 367 389 367 389 0.99
8 27 0.096 1.4 9.7 1.3 1 23 394 416 394 416 0.98
9 27 0.00041 0.0058 17.1 2.8 1 23 421 443 421 443 0.98
10 27 0.099 1.4 9.6 1.3 1 23 448 470 448 470 0.98
11 27 0.0076 0.11 13.2 0.7 1 21 475 495 475 496 0.96
12 27 0.0032 0.046 14.3 1.6 1 23 502 524 502 524 0.99
13 27 2.2e-05 0.00031 21.1 4.3 1 23 529 551 529 551 0.99
14 27 0.0032 0.046 14.3 1.6 1 23 556 578 556 578 0.99
15 27 0.0014 0.02 15.4 4.1 1 23 583 605 583 605 0.98
16 27 0.011 0.15 12.7 0.8 1 23 610 632 610 632 0.99
17 27 3.1e-05 0.00044 20.7 3.4 1 23 637 659 637 659 0.99
18 27 0.0014 0.02 15.4 4.1 1 23 694 716 694 716 0.98
19 27 0.0093 0.13 12.9 1.0 1 23 721 743 721 743 0.99
20 27 3.1e-05 0.00044 20.7 3.4 1 23 748 770 748 770 0.99
21 27 0.0013 0.019 15.5 1.3 1 23 775 797 775 797 0.99
22 27 0.00025 0.0035 17.8 3.6 1 23 802 824 802 824 0.99
23 27 0.059 0.83 10.4 0.4 1 23 829 851 829 851 0.98
24 27 3.1e-05 0.00044 20.7 3.4 1 23 856 878 856 878 0.99
25 27 0.0013 0.019 15.5 1.3 1 23 883 905 883 905 0.99
26 27 0.00025 0.0035 17.8 3.6 1 23 910 932 910 932 0.99
27 27 0.026 0.37 11.5 1.3 1 23 937 959 937 959 0.99

Sequence Information

Coding Sequence
atgaaggAATATAAATCCTCAAATGTGGATCCAATACAAGTGTTAGCATATAAGAAATATATGTCTTTGCGatataaaaagaaagataaacaAATGTTTACAATGGATGTTGATTATAACGAAATTTATCCAATAAAATCGGAAATAAttgtaaacgaaacattttcacatTGTGGAAATTATGAAGATAATGggaataaagaattgaaaacggACCCCCTGGATATAAATGAATCTCTTCTATGCAAAGAAGGGGATAATCTTGTGAAGCTCACTGATGTACCGGTAaatcaatatatttgtaatgaatgtagtTTCATTACAACAgagaaaaattctttaatacaacacttgaacattattaaaaatatacgcTATTTTTGcaaggaatgtaattttaaaaccctGTTTGGATGTTCGATAAAAGAGCATTTTAGGATTCATAACAGGGTTGTTTGTAgacatattactaaaaaatgtaataacaagaAGTCGCAAATTTTCTCTTTAGCACCACAAGGTGGTATTAAACATATTTGTAAggaatattattataaaacaccacGGAAACGGACTGTAAggcaacatttgaaaattaatagtgatcatgaatataagtgtacggaatgtgattataaaacaaaatggaaaaggATTCTAAAGGctcatttaaaaatccatagtGACGATAAATTTAACTGTaatgattgtgattataaaacactgcggAAAAGCaaactaaaggaacatatgaaaattcatagtggtgacgaatataagtgtaaggaatgtgattataaaacaatgcaGAAATACAATCTAAAGGCACATATAAAAATCCATAGTGACATTAAATATAACTCTAATGatagtaattataaaacagtgcggcaACAGAAACTAatggaacatgtaaaaattcatactggtgatgaatataagtgtaaagaatgtaactataaaacagtgagaaaaggtagtctaaaggaacatatgaaaattcatactggtgataaatttaagtgtaaggaatgtgattataaaacagtctgGAAACAGAAACTAatggaacatgtaaaaattcatactggtgatgaatataagtgtaaagaatgtaactataaaacagtgagaaaagctagtctaaaggaacatattaaaattcatactggtgatacaTTTCAGtgtaagaaatgtgattataaaacaccatggaaacaaagtctaaatctacatttaaaaatccatagtGATGATAAATATAACTGTAataattgtgattataaaacagtgcacaAACGCAATCTACAGGAACATATGAACATTCATATTGgcgacgaatataagtgtaaggaatgtgattttaaaacaatatggaaacagactctaaaggtacatttaaaaatccatactggtgatgaatataagtgtagcgattgtgattataaaacatcgtGGAAacgtaatctaaaggaacatatgaaaattcgcactggtgatgaatataagtgtaaggaatgtgattacaaaacatcgtggaaacagaatctaaaggtacatctaaaaatccatactggtgatgaatataagtgtagcgattgtgattataaaacagtgcaaaaacacaatctaaaggaacatatgaaaactcatactggtgatgaatataagtgtaaggaatgtgattacaaaacatcgtggaaacagaatctaaaggtacatttaaaaatccatactggtgatgaatataagtgtagcgattgtgattataaaacagtgaaaaAACACAATCTACAGGAACAtaagaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaccatggaaaaacagtctaaaggcacatttaaaaatccatactggtgatgaatataagtgtagcgattgtgattataaaacagtgcaaaaacacaatctaaaggaacatatgaaaattcatactggtaatgaatataaatgtaaggaatgtgattacaaaacaatatggaaacagactctaaagaatctaaaggtacatttaaaaatccatactggtgatgaatataagtgtagcgattgtgattataaaacagtgaaaaAACACAATCTACAGGAACAtaagaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaccatggaaaaacagtctaaaggcacatttaaaaatgcatactggtgatgaatataagtgtagcgattgtgactataaaacagtgcaaaaacacaatctaaaggaacatatgaaaatccatactggtaatgaatataagtgtaaggaatgtggttataaaacatcatggaaacagaatttaaaggtacatttaaaaatccatactggtgatgaatataagtgtagcaattgtgattataaaacagtgcacaAACGCAGTCTACAggaacatatgagaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaccatgggaAAGGGgtctaaaggcacatttaaaaatgcatactggtgatgaatataagtgtagcgattgtgactataaaacagtgcaaaaacacaatctaaaggaacatatgaaaatccatactggtaatgaatataagtgtaaggaatgtggttataaaacatcatggaaacagaatttaaaggtacatttaaaaatccatactggtgatgaatataagtgtagcaattgtgattataaaacggtgcacAAACGCAGTCTACAggaacatatgagaattcatactggtgatgaatataagtgtaaggaatgtaattataaaacaatatggaaacagagtctaaaggcacatttaaaaatccatactggtgatgaataa
Protein Sequence
MKEYKSSNVDPIQVLAYKKYMSLRYKKKDKQMFTMDVDYNEIYPIKSEIIVNETFSHCGNYEDNGNKELKTDPLDINESLLCKEGDNLVKLTDVPVNQYICNECSFITTEKNSLIQHLNIIKNIRYFCKECNFKTLFGCSIKEHFRIHNRVVCRHITKKCNNKKSQIFSLAPQGGIKHICKEYYYKTPRKRTVRQHLKINSDHEYKCTECDYKTKWKRILKAHLKIHSDDKFNCNDCDYKTLRKSKLKEHMKIHSGDEYKCKECDYKTMQKYNLKAHIKIHSDIKYNSNDSNYKTVRQQKLMEHVKIHTGDEYKCKECNYKTVRKGSLKEHMKIHTGDKFKCKECDYKTVWKQKLMEHVKIHTGDEYKCKECNYKTVRKASLKEHIKIHTGDTFQCKKCDYKTPWKQSLNLHLKIHSDDKYNCNNCDYKTVHKRNLQEHMNIHIGDEYKCKECDFKTIWKQTLKVHLKIHTGDEYKCSDCDYKTSWKRNLKEHMKIRTGDEYKCKECDYKTSWKQNLKVHLKIHTGDEYKCSDCDYKTVQKHNLKEHMKTHTGDEYKCKECDYKTSWKQNLKVHLKIHTGDEYKCSDCDYKTVKKHNLQEHKKIHTGDEYKCKECDYKTPWKNSLKAHLKIHTGDEYKCSDCDYKTVQKHNLKEHMKIHTGNEYKCKECDYKTIWKQTLKNLKVHLKIHTGDEYKCSDCDYKTVKKHNLQEHKKIHTGDEYKCKECDYKTPWKNSLKAHLKMHTGDEYKCSDCDYKTVQKHNLKEHMKIHTGNEYKCKECGYKTSWKQNLKVHLKIHTGDEYKCSNCDYKTVHKRSLQEHMRIHTGDEYKCKECDYKTPWERGLKAHLKMHTGDEYKCSDCDYKTVQKHNLKEHMKIHTGNEYKCKECGYKTSWKQNLKVHLKIHTGDEYKCSNCDYKTVHKRSLQEHMRIHTGDEYKCKECNYKTIWKQSLKAHLKIHTGDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-