Lyun014695.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002108.1:5135930-5148984[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 38 0.28 4 8.2 3.5 1 23 150 172 150 172 0.97
2 38 0.084 1.2 9.9 0.8 1 23 177 199 177 199 0.98
3 38 0.013 0.19 12.4 1.3 1 23 204 226 204 226 0.98
4 38 0.45 6.4 7.6 3.5 1 23 231 253 231 253 0.98
5 38 0.002 0.028 15.0 0.7 1 23 258 280 258 280 0.99
6 38 0.054 0.76 10.5 1.3 1 23 285 307 285 307 0.99
7 38 0.96 14 6.5 1.8 1 23 312 334 312 334 0.94
8 38 0.38 5.4 7.8 0.3 1 23 339 361 339 361 0.96
9 38 0.056 0.79 10.4 4.2 1 23 366 388 366 388 0.98
10 38 0.027 0.39 11.4 1.5 1 23 393 415 393 415 0.99
11 38 0.052 0.73 10.5 1.0 1 23 420 442 420 442 0.98
12 38 0.00022 0.0031 18.0 0.7 1 23 447 469 447 469 0.98
13 38 0.43 6.1 7.6 3.7 1 23 474 496 474 496 0.98
14 38 0.0058 0.083 13.5 2.0 1 23 501 523 501 523 0.99
15 38 4.5e-05 0.00064 20.2 1.2 1 23 528 550 528 550 0.99
16 38 0.073 1 10.1 0.8 1 23 555 577 555 577 0.98
17 38 0.46 6.6 7.5 3.2 1 23 728 750 728 750 0.97
18 38 0.058 0.82 10.4 0.8 1 23 755 777 755 777 0.98
19 38 0.016 0.22 12.1 0.5 1 23 782 804 782 804 0.98
20 38 0.00019 0.0027 18.2 3.1 1 23 809 831 809 831 0.99
21 38 0.052 0.73 10.5 1.3 1 23 836 858 836 858 0.99
22 38 3.4e-05 0.00048 20.5 1.3 1 23 863 885 863 885 0.99
23 38 1.1 15 6.4 0.5 1 23 890 912 890 912 0.96
24 38 0.003 0.042 14.4 0.6 1 23 917 939 917 939 0.98
25 38 0.052 0.73 10.5 1.3 1 23 944 966 944 966 0.99
26 38 0.057 0.81 10.4 2.1 1 23 971 993 971 993 0.96
27 38 0.00039 0.0055 17.2 1.7 1 23 998 1020 998 1020 0.99
28 38 0.056 0.79 10.4 4.2 1 23 1025 1047 1025 1047 0.98
29 38 0.027 0.39 11.4 1.5 1 23 1052 1074 1052 1074 0.99
30 38 0.19 2.7 8.8 0.9 1 23 1079 1101 1079 1101 0.98
31 38 0.00015 0.0021 18.5 0.9 1 23 1106 1128 1106 1128 0.99
32 38 0.079 1.1 9.9 2.5 1 23 1133 1155 1133 1155 0.98
33 38 0.0027 0.039 14.6 2.4 1 23 1160 1182 1160 1182 0.97
34 38 0.00011 0.0015 18.9 1.7 1 23 1187 1209 1187 1209 0.99
35 38 0.66 9.4 7.0 4.3 1 23 1214 1236 1214 1236 0.98
36 38 0.0032 0.045 14.3 0.8 1 23 1241 1263 1241 1263 0.97
37 38 5.3e-05 0.00076 19.9 1.5 1 23 1268 1290 1268 1290 0.99
38 38 0.062 0.87 10.3 1.2 1 23 1295 1317 1295 1317 0.98

Sequence Information

Coding Sequence
ATGGATATTAGTTCTACTGAAAGTTGTTCAATAAAATCcgaaattattttaacagaaacattttgtgAAAACTATGAAGATTGTGGTAATGAAGAACTGAAAACGGAGCCAGTAGATTACATAGAATTGTTTAAGTGTAAGGAAGAAGATGATCCTGCAGAGCACATGGATACATCTGTTGCCTCAATACAACAATATTCGGGTAATGAACGTAACTTTACAGCAGTGGAAAACGATTCCCTTCAGGgacatttaaaaactacaaaaaatattcaatatttttgtaagtactGTAACTTTAGAACTCATTTGGAATGTTTCataaaaaagcatttaaaaattcacaagGTAGTAGACGATACATATATTACTAAGGAATCTAATTTTAAGATACCAGAGACTTTCTCTTTAGCACCACATATAAAAAAGTCAAGATGTGATGATAAATACATTtgcaatgaatgtaattttacgacattgaacaaaaattgtCTAAGGAGACATATGACAATTCATATAGCTGACaaatatatgtgtaaagaatgtgattataaaacagtatggaaatatagcctaaaggaacatgtcaaaattcacaccaataaggaatataagtgtaaaaaatgtgattataaaacagtgtggaaagataatctaaaggaacatgtgaaaattcataaaggtgaaaaatataagtgtaaagaatgtgattataaaacagtgtggaaacgttgtctaaaggaacatttgaaaattcataatggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaaagtaatctaaaggcacatgtgaaaattcataaagaTGAGgattataagtgtaaagaatgtgattataaaacagtttggaaaaaTCTGCTAAAGGACCATGTCAAAACTCATACAGCTgagaaatataagtgtaaagaatgtgattataaagcaTTTCAGAAACGTCGtataaaggaacatgtcaaaatacaCACAGGTGAGAattataagtgtaacgaatgtgattataaaacagtttggaaaggCAGGCTAAGtgcacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacaaggtggaaaaatcatctaaagcaacatgtcaaaattcatacaggcgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaatatctgctaaaagaacatgtcaaaactcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaatatCTGCTAaaggatcatgtcaaaattcatacaggcgatgaatttaagtgtaatgaatgtgattacaaaacagtgcggGAAAGTAGTCTAAAGatacacgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtttggaaaaatcatctaaaggagcatttcaaaattcacacaggtgaggaatataagtgtaaggaatgtgactataaaacaatcCAGAAACGTCGTCTAAAGGatcacgtcaaaattcatacaggtgatgaatataagtgtaacgagtgtgattacaaaacagtgcggaaaagtagtctaaaggtacatgtcaaaattcatacaggtgaggaatatcagtgtaaagaatgcgattataaaacggtgtggaaaaaacttttaaaggaacatgtcaaaattcatacagacatacaagttagttATCCGACTGTTTTGTGCTCATCACATGATTATAGATATTTCCTGAttcgacactttgatcaaagtttcggatgggatactaaacagATGGATATTAATTCTACTGAAAGTTGTTCAATAAAATCcgaaattattttaacagaaacattttgtgAAATCTATGAAGattgtggTAATGAAGAACTGAAAACGGAGCCAGTAGATTACAAAGAATTGTTTAAGTGTAATGAAAAAGATGATCCTGCAGAGCACATGGATACATCTGTTGCCCCAATACAACAATGTTCTGGTAATAAACGTAACTTTACAACAATGGAAAACGATTCCCTCAAGGTAGTAGATGATACATATATTACTAAAGAATCTAATTTTAAGACGCCACAGAGTTTCTCCTTAGCACCACATATTGAAAAGTCTAGATgtgataataaatacatttgcaatgaatgtaattttatgacattgaacaaaaattgtCTAAGGAGACATATGACAATTCATATCGCTGACGAATATATGTGTAAagactgtgattataaaacagtatggaaatatagcctaaaggaacatgtcaaaattcacaccagtagggaatataagtgtacagaatgtgattataaaacagtgtggaaaggtaatctaaaggaacacgtaaaaattcataaaggtgaagaatataagtgtaaagaatgtgattataaaacggtgagGAAACATAGTCTacaggaacatatcaaaattcatacaggcgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatctgctaaaggaacatgtcaaaactcATACTGGtcaggaatataagtgtaaagaatgtgattataaaacagtgcgggaAAGTAGTCTgaaggaacatatgaaaattcataaaggtgaggaatataagtgtatagaatgtgattataaaacagtgtggaaaagtaatctaaaggaacacgaGAAAATTCATAAAGATGAGgaatatatgtgtaaagaatgtgattataaagcgGTGAGGAAACGTAGTCTacaggaacatgtcaaaattcatacaggcgagggatataagtgtaaagaatgtgattataaaacagtttggaaaaatctgctaaaggaacatgtcaaaactcatacaggtgagaaatataagtgtaaagaatgtgattataaagcaTTTCAGAAACGTCGGctgaaggaacatgtcaaaattcacactggtgaggaatataagtgtaaagaatgtgattataaaacagtgcggaaaaatagtctaaaggaacatgttaaaattcatacagatgaggaatataagtgtaaagaatgtgattataaaacaaggtggaaaaatcatctaaagcaacatgtcaaaattcacacaggtgaggaatacaagtgtaaagaatgtgattataaaacagtgtggaaatatctgctaaaagaacatgtcaaaactcatacaggtgaggaatataagtgtagagaatgtgattataaaacagtgtggaaatatCTGCTAaaggatcatgtcaaaattcatacaggtgatgaatataagtgtaaagagtgtgattacaaaacagtgcgggaaagtagtctaaaggtacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtttggaaaaatcatctaaaggaacatgtcaaaattcacacaggtgaggaatataagtgtaaagaatgtgattataaaacatttcaGAAACGTGGTCTAAAGGATCacctcaaaattcatacaggcgatgaatataagtgtaaagaatgtgattataaaacagtgtcgaaatataatctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaacgttgtctaaaggaacatttgaaaagtcatacaggtgaggaatataaatgtatagaatgtgattataaaacagtgtcgaAATATAATCTAagggaacatatcaaaattcacacaggcgaggaatataaatgtaaagagtgtgattacaaaacagtgcggaaaagtagtctaaaggtacatgtcaaaattcatacaagtgaggaatataagtgtaaagaatgcgattataaaacagtgtggaaaaaacttctaaaggaacatatccaAAATCATGCTGGTaaggaatataaatgtaaataa
Protein Sequence
MDISSTESCSIKSEIILTETFCENYEDCGNEELKTEPVDYIELFKCKEEDDPAEHMDTSVASIQQYSGNERNFTAVENDSLQGHLKTTKNIQYFCKYCNFRTHLECFIKKHLKIHKVVDDTYITKESNFKIPETFSLAPHIKKSRCDDKYICNECNFTTLNKNCLRRHMTIHIADKYMCKECDYKTVWKYSLKEHVKIHTNKEYKCKKCDYKTVWKDNLKEHVKIHKGEKYKCKECDYKTVWKRCLKEHLKIHNGEEYKCKECDYKTVWKSNLKAHVKIHKDEDYKCKECDYKTVWKNLLKDHVKTHTAEKYKCKECDYKAFQKRRIKEHVKIHTGENYKCNECDYKTVWKGRLSAHVKIHTGEEYKCKECDYKTRWKNHLKQHVKIHTGEEYKCKECDYKTVWKYLLKEHVKTHTGEEYKCKECDYKTVWKYLLKDHVKIHTGDEFKCNECDYKTVRESSLKIHVKIHTGEEYKCKECDYKTVWKNHLKEHFKIHTGEEYKCKECDYKTIQKRRLKDHVKIHTGDEYKCNECDYKTVRKSSLKVHVKIHTGEEYQCKECDYKTVWKKLLKEHVKIHTDIQVSYPTVLCSSHDYRYFLIRHFDQSFGWDTKQMDINSTESCSIKSEIILTETFCEIYEDCGNEELKTEPVDYKELFKCNEKDDPAEHMDTSVAPIQQCSGNKRNFTTMENDSLKVVDDTYITKESNFKTPQSFSLAPHIEKSRCDNKYICNECNFMTLNKNCLRRHMTIHIADEYMCKDCDYKTVWKYSLKEHVKIHTSREYKCTECDYKTVWKGNLKEHVKIHKGEEYKCKECDYKTVRKHSLQEHIKIHTGEEYKCKECDYKTVWKNLLKEHVKTHTGQEYKCKECDYKTVRESSLKEHMKIHKGEEYKCIECDYKTVWKSNLKEHEKIHKDEEYMCKECDYKAVRKRSLQEHVKIHTGEGYKCKECDYKTVWKNLLKEHVKTHTGEKYKCKECDYKAFQKRRLKEHVKIHTGEEYKCKECDYKTVRKNSLKEHVKIHTDEEYKCKECDYKTRWKNHLKQHVKIHTGEEYKCKECDYKTVWKYLLKEHVKTHTGEEYKCRECDYKTVWKYLLKDHVKIHTGDEYKCKECDYKTVRESSLKVHVKIHTGEEYKCKECDYKTVWKNHLKEHVKIHTGEEYKCKECDYKTFQKRGLKDHLKIHTGDEYKCKECDYKTVSKYNLKEHVKIHTGEEYKCKECDYKTVWKRCLKEHLKSHTGEEYKCIECDYKTVSKYNLREHIKIHTGEEYKCKECDYKTVRKSSLKVHVKIHTSEEYKCKECDYKTVWKKLLKEHIQNHAGKEYKCK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-