Lyun007790.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001312.1:713299-717052[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.041 0.58 10.9 0.6 1 23 105 127 105 127 0.97
2 31 0.016 0.22 12.2 3.5 1 23 132 154 132 154 0.98
3 31 9.2e-05 0.0013 19.2 1.7 1 23 159 181 159 181 0.99
4 31 0.00071 0.01 16.4 3.4 1 23 186 208 186 208 0.99
5 31 0.059 0.84 10.3 0.5 1 23 213 235 213 235 0.98
6 31 0.002 0.029 14.9 0.6 1 23 240 262 240 262 0.99
7 31 0.097 1.4 9.7 0.6 1 23 267 289 267 289 0.98
8 31 0.35 4.9 7.9 0.9 1 23 294 316 294 316 0.98
9 31 0.00017 0.0024 18.3 3.3 1 23 321 343 321 343 0.99
10 31 0.034 0.48 11.1 0.6 1 23 348 370 348 370 0.98
11 31 0.0088 0.12 12.9 0.7 1 23 375 397 375 397 0.98
12 31 0.052 0.74 10.5 1.0 1 23 418 440 418 440 0.98
13 31 0.044 0.62 10.8 0.6 2 23 465 486 464 486 0.97
14 31 0.0023 0.032 14.8 0.7 1 23 491 513 491 513 0.99
15 31 0.077 1.1 10.0 0.5 1 23 518 540 518 540 0.98
16 31 8.4e-05 0.0012 19.3 2.8 1 23 545 567 545 567 0.99
17 31 0.059 0.84 10.3 0.5 1 23 572 594 572 594 0.98
18 31 0.002 0.029 14.9 0.6 1 23 599 621 599 621 0.99
19 31 0.073 1 10.0 0.3 1 23 626 648 626 648 0.98
20 31 0.085 1.2 9.8 0.6 1 23 653 675 653 675 0.98
21 31 0.00017 0.0024 18.3 3.3 1 23 680 702 680 702 0.99
22 31 0.014 0.19 12.4 0.5 1 23 707 729 707 729 0.98
23 31 0.0088 0.12 12.9 0.7 1 23 734 756 734 756 0.98
24 31 0.0054 0.076 13.6 0.7 1 23 761 783 761 783 0.98
25 31 6.8e-05 0.00096 19.6 1.4 1 23 788 810 788 810 0.99
26 31 0.0063 0.09 13.4 0.7 1 23 815 837 815 837 0.99
27 31 0.077 1.1 10.0 1.1 1 23 842 864 842 864 0.98
28 31 0.0023 0.032 14.8 0.7 1 23 869 891 869 891 0.99
29 31 0.019 0.27 11.9 0.2 1 23 896 918 896 918 0.98
30 31 0.00022 0.0031 18.0 1.3 1 23 923 945 923 945 0.99
31 31 0.42 6 7.7 1.7 1 23 950 973 950 973 0.96

Sequence Information

Coding Sequence
ATGAATGTTGATTCTATtcaaaattttccaataaaatctgaagtgattttaacagaaacgtttTCGTTTGGTGCAGAATATGGAGaTTATGGTAGTGAAGCACTGAAAACGGAGCCAGTGGATTGCAAGGAatcgtttaaatgtaatgaaGAAAATGTTCCTGTGGAGCACATGGATACAAATGCTGCTACAATGCTGCTATACTCTTCTAATGAGTGTAATTTTACAACGAAAACAGATAcatgtaatattaaaacaccACAGATTTTCCCTTCAAAACCACTGCTGCAAACTCCAATAAATGGTGACAAATATATTTGCGctgaatgtaattatacaacGTTAACCAAAAATGATCTAAGGAAACACgtgaaaattcataaaggtgCAGAATATAGTTGTGAGaattgtaactataaaacatgTTTGAAAAGTTCTTTTACagcacacatcaaaattcatacagtttccaaatataagtgtaaagaatgtgattataaagtaGCATCGAAATATAGTCTAATGGATCATTACAGAACTCATACAGGTGATGTATATAAGtgcaatgaatgtgattataaaacaatacgaaAAAGTTGTctgaaggaacatgtcaaaattcatacagacgacatatataagtgtgaagaatgtgattataaaacagtatggaaacagagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgcgattataaaacagtatgggcAAGTAATCTAaacaaacatgtcaaaattcatacaagcgACGTATATAAGTgtgaaaaatgtgattataaagtagtttggaaacagagtctaaaggaacatgtcaaaattcacacagatGACATGTATAAATGCGCaaaatgcgattataaaacagtatggaaaagtcgtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaatgaatgtaattataaaacagtacagaaaagtcatctaaaggaacatgttaaaattcatacagacaacatatataagtgtgaagactgtgattataaaacagtatggaaacgcagtctaaaggaacatgtcaaaattcatacaggtgttgaatataagtgtaaagaatgcgattataaaacagtatgggcgagttatttaaacaaacacgtcaaaattcatacaagcgACATGTATCAGTgtgaaaaatgtgattataaaacggtatggaaaagtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaacagagtctaaaggaacatgtcaaaattcatacaagcgacatgtcaaaattcatacaggcgacaaatataaatgtgaaaaatgtgattataaaacggtatggaaaatgtaaagaatgcgactATAAAACACTACGTCAAAGTggtctaaaagaacatgtcaaaattcatacaggtgatgaatataagtgtaatgaatgtgattataaaacagtatgggaaagtaatctaaagagacatgtcaaaattcatacaagcaataaatatgagtgtaaagaatgtgattataaaacagtatggaaacagagtctaaaggaacatgtcaaaattcatacaggtgatgtaTATAAGtgcaatgaatgtgattataaaacagtacagaaaagtcatctaaaggaacatgtcaaaattcatacagacgacatatataagtgtgaagaatgtgattataaaacagtatggaaacagagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgcgattataaaacagtatgggcAAGTAATCTAaacaaacatgtcaaaattcatacagacgacatatataagtgtgaagaatgtgattataaagtagtttggaaacagagtctaaaggaacatgtcaaaattcatacagacgacatatataagtgtgaagaatgtgattataaaacagtatggaaaagtcgtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaatgaatgtaattataaaacagtacagaaaagtcatctaaaggaacatgtcaaaattcatacagacgacatatataagtgtgaagactgtgattataaaacagtatggaaacgcagtctaaaggaacatatccaaattcatacaggtgatgaatataagtgtaaagaatgcgattataaaacagtatgggcgagttatttaaacaaacacgtcaaaattcatacaagcgACATGTATCAGTgtgaaaaatgtgattataaaacggtatggaaaagtaatctaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaatgaatgtgattataaaacagtacgaaaaacgaatctaaaggaacatgtcaaaattcatacaggcgacaaatataaatgtgaaaaatgtgattataaaacggtatggaaaagtagtctaaaggaGCATATCCAAATTCATACAGGCAATGtttataagtgtaaagaatgcgattataaaacagtatggaaaagtcgtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaatgaatgtgattataaaacagtatgggaaagtaatctaaagagacatgtcaaaattcatacaagcaataaatatgagtgtaaagaatgtgattataaaacggtatggaaaggtagtctaaaggaacatatccaaattcatacaggcaatgtatataagtgtgaagaatgtgattataaaacagtgcggaaggGTTTTCTAAAGcgacatgttaaaattcatacgggcgatgagtataagtgtaatgaatgtgattataagaccctgtggaaaaataatctaaacaaaCATGTTAAAACAAATCATATAGTTGGcaaatgtaaatga
Protein Sequence
MNVDSIQNFPIKSEVILTETFSFGAEYGDYGSEALKTEPVDCKESFKCNEENVPVEHMDTNAATMLLYSSNECNFTTKTDTCNIKTPQIFPSKPLLQTPINGDKYICAECNYTTLTKNDLRKHVKIHKGAEYSCENCNYKTCLKSSFTAHIKIHTVSKYKCKECDYKVASKYSLMDHYRTHTGDVYKCNECDYKTIRKSCLKEHVKIHTDDIYKCEECDYKTVWKQSLKEHVKIHTGDEYKCKECDYKTVWASNLNKHVKIHTSDVYKCEKCDYKVVWKQSLKEHVKIHTDDMYKCAKCDYKTVWKSRLKEHVKIHTGDEYKCNECNYKTVQKSHLKEHVKIHTDNIYKCEDCDYKTVWKRSLKEHVKIHTGVEYKCKECDYKTVWASYLNKHVKIHTSDMYQCEKCDYKTVWKSDEYKCKECDYKTVWKQSLKEHVKIHTSDMSKFIQATNINVKNVIIKRYGKCKECDYKTLRQSGLKEHVKIHTGDEYKCNECDYKTVWESNLKRHVKIHTSNKYECKECDYKTVWKQSLKEHVKIHTGDVYKCNECDYKTVQKSHLKEHVKIHTDDIYKCEECDYKTVWKQSLKEHVKIHTGDEYKCKECDYKTVWASNLNKHVKIHTDDIYKCEECDYKVVWKQSLKEHVKIHTDDIYKCEECDYKTVWKSRLKEHVKIHTGDEYKCNECNYKTVQKSHLKEHVKIHTDDIYKCEDCDYKTVWKRSLKEHIQIHTGDEYKCKECDYKTVWASYLNKHVKIHTSDMYQCEKCDYKTVWKSNLKEHVKIHTGDEYKCNECDYKTVRKTNLKEHVKIHTGDKYKCEKCDYKTVWKSSLKEHIQIHTGNVYKCKECDYKTVWKSRLKEHVKIHTGDEYKCNECDYKTVWESNLKRHVKIHTSNKYECKECDYKTVWKGSLKEHIQIHTGNVYKCEECDYKTVRKGFLKRHVKIHTGDEYKCNECDYKTLWKNNLNKHVKTNHIVGKCK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-