Lyun007387.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:11356832-11364396[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.0025 0.036 14.6 1.5 1 23 92 114 92 114 0.99
2 28 9.8e-05 0.0014 19.1 0.7 1 23 119 141 119 141 0.99
3 28 0.022 0.3 11.7 1.1 1 23 146 168 146 168 0.99
4 28 0.00033 0.0047 17.4 0.8 1 23 173 195 173 195 0.99
5 28 4.4e-05 0.00063 20.2 1.1 1 23 200 222 200 222 0.99
6 28 0.07 0.99 10.1 0.7 1 23 227 249 227 249 0.98
7 28 0.033 0.46 11.2 2.1 1 23 254 276 254 276 0.99
8 28 3.7e-05 0.00052 20.4 1.8 1 23 281 303 281 303 0.99
9 28 0.014 0.2 12.3 0.5 1 23 308 330 308 330 0.98
10 28 0.0058 0.082 13.5 2.6 1 23 335 357 335 357 0.98
11 28 5.9e-05 0.00084 19.8 0.5 1 23 435 457 435 457 0.99
12 28 0.15 2.2 9.0 2.5 1 23 462 484 462 484 0.96
13 28 6.4e-05 0.0009 19.7 2.3 1 23 489 511 489 511 0.99
14 28 0.32 4.5 8.1 2.7 1 23 543 565 543 565 0.98
15 28 4.6e-05 0.00064 20.1 1.7 1 23 570 592 570 592 0.99
16 28 0.00085 0.012 16.1 2.0 1 23 597 619 597 619 0.99
17 28 9.6e-05 0.0014 19.1 3.2 1 23 624 646 624 646 0.99
18 28 1.5e-05 0.00022 21.6 0.4 1 23 651 673 651 673 0.99
19 28 0.00068 0.0096 16.5 1.3 2 23 706 727 705 727 0.97
20 28 0.2 2.8 8.7 2.1 1 23 732 754 732 754 0.97
21 28 1.4 20 6.0 1.2 1 23 759 781 759 781 0.94
22 28 7.9e-05 0.0011 19.4 2.1 1 23 786 808 786 808 0.98
23 28 0.0083 0.12 13.0 0.7 1 23 813 835 813 835 0.99
24 28 0.0001 0.0014 19.1 0.8 1 23 839 861 839 861 0.99
25 28 0.00044 0.0062 17.0 6.0 1 23 866 888 866 888 0.99
26 28 0.017 0.24 12.1 1.4 1 23 893 915 893 915 0.99
27 28 1.9 27 5.6 0.6 1 23 920 942 920 942 0.96
28 28 7.2e-05 0.001 19.5 2.8 1 23 947 969 947 969 0.99

Sequence Information

Coding Sequence
ATGGATGTTGaatataatgaaagttattcaATAAAATCGGAAGTGGTTGTAAATGAAACGTTTTCCTTTTCTGGAAAATGTGAAGattatgggaatgaagaattgaaaatgGAGCCAGCAAATTTTCAAGTAACTTCTGAATGGGAACGAGATATTCATATGGACCACACTAATAATAGTTCCAAATCTGATtgtatttgtaatgaatgtaattataaatcacAGTGGAAATCGAATCTAATAAAagatgtgaaaattcatactgatgataagtacaaatgtaaagaatgtgagtaCAAAACACCTCGGAGGCAAACTTTAaaagaacatgtaaaaattcatgctagtgatgagtataaatgtaatgaatgtgactatataACAGTgaggaaaaatttatttaaagcacACATTAGAATCCAtactgatgatgaatataaatgtaatgaatgtgactacaaaacaccatggaagcaaaattttaaggatcatataaaaattcataccggtgatgagtataaatgtGATGAATGTAACTATAAGACAGTGAGGACAGATCTATTTAAAGCACACAttagaatccatactggtgatgaatataagtgtaaggaatgtgaatttaaaacaataaggAAAGATCAACTGAAAGCACACATCAggatccatactggtgatgaatataaatgtaaagaatgtgactataaaacaccatggaagcagaGTTTACAgctacatgtaaaaattcatactggtgatgtgtataaatgtaatgaatgtgcctacaaaacagtgaggaaagatCGATTTAAAGCACACTTCAGAATCCATACTgttgatgaatataagtgtaaggaatgtaaatttaaaacagtaaGGAAAGATCAACTGAAAGCACACATCAggatccatactggtgatgaatataaatgtaacgaatgtgactacaaaacaccatggaagcagaATTTAACCGTACATGTCAAGATCCATACTGGTgatcaatataaatgtaatgaatgtgactataaaacagtgcgaaaagatcgATTTAAAGCACACTtcaaaatccatactggtgatgaatatatgtgtggggaatgtgactacaaaacaccgtTAAAAGAAACTTTAAAGAattatggGAGTGAAGAATTGAAAGCGGAACTGGTAGATCTTGAAGCGGCTTCTAAATGGGAAAGTGATATTCACACCAAATGTGAATATATTTGTAAGGAACGGGACTGCAAAACACCATGGAAtcagaatttaaagaaacatgtaacaattaatactggtaatgaatataaatgtaatgtatgtaactataaaacagtgaacaAAGTGCTACTTAAAGCACACAttagaatccatactggtgatgaatacaaatgtaaggaatgtgacttcAAAACACTGCGGAAGCAGAaattaaaggaacatgtaaaagtccatactggtgatgaatataaatgcaaTGAATGTGAATACAAAACGGTAAGGAAATATCAACTTAAACAACACCTCAggatccatactggtgatgaataccagtgtaaggaatgtatctacaaaacaccatggaagcagagtttaaaggtacatgtaaaatttcatactggtgatgaatacaagtgtaaggaatgtgacttcAAAACATCATGGAAGCAGACTTttaaggaacatttaaaaatccacactggtgataaatataaatgtaatgagtgtgactataaaacagtgaggaaatatgaatttaaagcaCACCTCAGAAtccacactggtgatgaatataaatgtactgcatgtgactataaaacagtgaggaaataTCAATTTAAAGCACATCTTAGAATCCacactggtgaagaatataaatgtaataaatgtgactataaaactgtaagaaaatatcaatttaaagCACACCTCAGAATTCattctggtgatgaatataaatgtaatgaatgtgactacaaaacagtgAACAAAGCGCTACTTAAAGCACACAttagaatccatactggtgatgtatacaagtgtaaggaatgtcaCTTCAAAACACAGTGGAAGCAGACTTTTAACGAACAtgtaaaaatccatactggtaaTATgcttaaatgtgaaaaatgtgaCTATAGAACAGTAAGGAAATTTAAGCTTAATGCGCACCTCAGAATCCATACTgacaatgaatataaatgtaaggaatgtgactacaaaacaccatggaagcatAATTTTAAGGAACATGTagaaatccatactggtgatgaatataattgtaatgaatgtgactacaaaacactgtggaagcagaatttaaagaaacatgtaaaaattcatattggtgaTGAGCATAAATGTAAtcaatgtgactataaaacagtgaggaaagatCTATTGAAAGCACACATccgaattcatactggtgatgaatataagtgtaaagaatgtgactataaaacaccatggaagcagaatttaaacgtacatttaaaaattcatactgatgaatataaatgtgaggaatgtgactataaaactgtgaataaagttcaatttaaaGCACACCTCAGGAtccacactggtgatgaatataaatgtaatgaatgtgactataaaacagtgaggaaacaTCACTTTAAAGCACACCTCAGAAtccacactggtgatgaatataaatgtaatgaatgtaactataaaacaatatggaaatatCAATTCAATGCACACctcagaatccatactggtggtgaatataaatgtatggaatgtgactacaaaacgcCATGGCAGCAGAGTTTTAAGGAGCATGCAAAAATCCATtccggtgatgaatataaatgtaatgaatgtgactataaaacagtgaggaaatataaacttaaaacaCACCTCAGAATCCATTCTGGTCATGAATATAAATCTAAGGAAAGTGACTACAAAACAGCATGGTTGCAGGATTTTAAGGAACATGTagaaatccatactggtgatgaatacaagtaA
Protein Sequence
MDVEYNESYSIKSEVVVNETFSFSGKCEDYGNEELKMEPANFQVTSEWERDIHMDHTNNSSKSDCICNECNYKSQWKSNLIKDVKIHTDDKYKCKECEYKTPRRQTLKEHVKIHASDEYKCNECDYITVRKNLFKAHIRIHTDDEYKCNECDYKTPWKQNFKDHIKIHTGDEYKCDECNYKTVRTDLFKAHIRIHTGDEYKCKECEFKTIRKDQLKAHIRIHTGDEYKCKECDYKTPWKQSLQLHVKIHTGDVYKCNECAYKTVRKDRFKAHFRIHTVDEYKCKECKFKTVRKDQLKAHIRIHTGDEYKCNECDYKTPWKQNLTVHVKIHTGDQYKCNECDYKTVRKDRFKAHFKIHTGDEYMCGECDYKTPLKETLKNYGSEELKAELVDLEAASKWESDIHTKCEYICKERDCKTPWNQNLKKHVTINTGNEYKCNVCNYKTVNKVLLKAHIRIHTGDEYKCKECDFKTLRKQKLKEHVKVHTGDEYKCNECEYKTVRKYQLKQHLRIHTGDEYQCKECIYKTPWKQSLKVHVKFHTGDEYKCKECDFKTSWKQTFKEHLKIHTGDKYKCNECDYKTVRKYEFKAHLRIHTGDEYKCTACDYKTVRKYQFKAHLRIHTGEEYKCNKCDYKTVRKYQFKAHLRIHSGDEYKCNECDYKTVNKALLKAHIRIHTGDVYKCKECHFKTQWKQTFNEHVKIHTGNMLKCEKCDYRTVRKFKLNAHLRIHTDNEYKCKECDYKTPWKHNFKEHVEIHTGDEYNCNECDYKTLWKQNLKKHVKIHIGDEHKCNQCDYKTVRKDLLKAHIRIHTGDEYKCKECDYKTPWKQNLNVHLKIHTDEYKCEECDYKTVNKVQFKAHLRIHTGDEYKCNECDYKTVRKHHFKAHLRIHTGDEYKCNECNYKTIWKYQFNAHLRIHTGGEYKCMECDYKTPWQQSFKEHAKIHSGDEYKCNECDYKTVRKYKLKTHLRIHSGHEYKSKESDYKTAWLQDFKEHVEIHTGDEYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-