Lyun007350.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:10989297-10992150[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.054 0.76 10.5 0.2 1 23 64 86 64 86 0.98
2 29 3.5e-05 0.0005 20.5 1.4 1 23 118 140 118 140 0.99
3 29 0.0036 0.05 14.2 2.0 1 23 145 167 145 167 0.99
4 29 0.34 4.8 8.0 0.9 1 23 172 194 172 194 0.96
5 29 3.5e-05 0.0005 20.5 1.4 1 23 199 221 199 221 0.99
6 29 0.0036 0.05 14.2 2.0 1 23 226 248 226 248 0.99
7 29 1.1e-05 0.00015 22.1 2.1 1 23 280 302 280 302 0.99
8 29 0.23 3.2 8.5 0.7 1 23 307 329 307 329 0.97
9 29 2.1 29 5.5 2.5 1 23 334 356 334 356 0.95
10 29 0.00017 0.0024 18.4 1.0 1 23 361 383 361 383 0.99
11 29 0.084 1.2 9.9 0.6 1 23 388 410 388 410 0.98
12 29 0.00025 0.0036 17.8 4.6 1 23 415 437 415 437 0.99
13 29 3 42 5.0 1.2 1 23 442 464 442 464 0.87
14 29 0.00017 0.0024 18.4 1.0 1 23 469 491 469 491 0.99
15 29 0.084 1.2 9.9 0.6 1 23 496 518 496 518 0.98
16 29 0.00025 0.0036 17.8 4.6 1 23 523 545 523 545 0.99
17 29 3 42 5.0 1.2 1 23 550 572 550 572 0.87
18 29 1.2e-05 0.00017 21.9 0.7 1 23 577 599 577 599 0.99
19 29 0.00012 0.0018 18.8 3.4 1 23 631 653 631 653 0.99
20 29 3 42 5.0 1.2 1 23 658 680 658 680 0.87
21 29 0.00038 0.0053 17.3 1.3 1 23 685 707 685 707 0.99
22 29 0.0059 0.084 13.5 1.2 1 23 712 734 712 734 0.99
23 29 0.00038 0.0053 17.3 1.3 1 23 739 761 739 761 0.99
24 29 0.063 0.89 10.3 1.8 1 23 766 788 766 788 0.98
25 29 0.00012 0.0018 18.8 3.4 1 23 793 815 793 815 0.99
26 29 0.12 1.7 9.4 2.2 1 23 820 842 820 842 0.98
27 29 0.00038 0.0053 17.3 1.3 1 23 847 869 847 869 0.99
28 29 0.0037 0.053 14.1 1.1 1 23 874 896 874 896 0.99
29 29 3.6e-06 5.2e-05 23.6 1.0 1 23 901 923 901 923 0.99

Sequence Information

Coding Sequence
ATGGATGTTAGATGTGATGAAAGTTATCTGATAAAATCGGAAGTGgttgtaaatgaaacatttaaCTCTTGTGGACAATACGAAGGTTATGGGAATGAAGAATTGAAAACGGAGCCGGCAGATTTTAAAACTGCTTTTAAATGGGAAGGAGAGATTCAGACGGATTACATCAATAGATCCAAATgtgaatatatttgtaatgaatgtaattatacaacACAGTGGAAATCTAATCTAGTGgtgcatgtcaaaattcataccaaTGATAAGGACAAGTATaaggaatgcgattataaaacatgGTGGAAACGGAGTCTAAAGGATCATGTAAAAATCCATACCGGTGATgggtataaatgtaatgaatgtgactttaaaacagtgaggaaagatCAATTTAAAGCGcacatcagaatccatactggtgatgaatataaatgtaaggaatgtgactacaaaacaacatggaagcagagtttaaacaaacatataaaaattcatactggtgatgaatataagtgtaaggaatgtgactacagaacaatatggaaacagagTTTAAAGGGACATGTAAAacttcatactggtgataagtataaatgtaatgaatgtgactttaaaacagtgaggaaagatCAATTTAAAGCAcacatcagaatccatactggtgatgaatataaatgtaaggaatgtgactacaaaacaacatggaagcagagtttaaacaaacatataaaaattcatactggtgacgaatataagtgtattgAATGTGACTACAgaacaatatggaaacagagtttaaagggacatgtaaaaattcatactggtgataagtataaatgtaatgaatgtgattttaaaacagcgAGAAAAGATCATCTTAAAGCAcacatcagaatccatactggtgatgaatataagtgtacggaatgtgactacaaaacaatatggaaacagagtttaaagggacatgtaaaaattcatactggtgatgagtataaatgtaacgaatgtgattacaaaacaccatggacgCAGAAATTCAAGGAACATATGAAATTTCATACTGGTGAAAAGTATAAATGTACTGAATGTGACTTTGAAACGGTGAGAAAAAATCAACTTAGAGCACATACCAGAATTCACACCGatgttgaatataaatgtaatgaatgtgattacaaaacatcaTGGACCCAGAGTTTAAACgtacatgttaaaattcatattggtgataagtataaatgtaatgaatgtgattttaaaacagcgCGAAAACATCATCTTAAAGCACATgtcagaatccatactggtgatgaatataaatgtaaggaatgtgactataaaacactatggaaacagagtttaaaggaacatgtaaaaattcatactggtgaaaaGTATAAATGTACTGAATGTGACTTTGAAACGGTGAGAAAAAATCAACTTAGAGCACATACCAGAATTCACACCGatgttgaatataaatgtaatgaatgtgattacaaaacatcaTGGACCCAGAGTTTAAACgtacatgttaaaattcatattggtgataagtataaatgtaatgaatgtgattttaaaacagcgCGAAAACATCATCTTAAAGCACATgtcagaatccatactggtgatgaatataaatgtaaggaatgtgactacaaaacactatggaaacagagtttaaaggaacatgtaaaaattcatagtggtgatgagtataaatgtaatgtttgTGACTTTAAAACGGTGAGAAAAGATCAACTTAGAGCACATATCAGAATTCAcactggcgatgaatataaatgtcatgaatgtgattacaaaacactaTGGATGCAGAAATTTaaggaacatataaaaattcatactggcgatgagtataaatgtaatgagtgtgattttaaaacagcgAGAAAATTTCATCTTAAAGCGCACTTGAGaatccatacaggtgatgaatataagtgtaaggaatgtgactataaaacactatggaaacagagtttaaaggaacatgtaaaaattcatactggtgatgagtataaatgtaGTGAATGTGACTTTAAGACGGTGAGGAAAAATCGACTTAAAGCACACATCagaattcacactggtgatgaatataagtgtaaggaatgtgactacaaaacaccatggaagcagaATTTAcagaaacatgtaaaaattcatactggtgatgagtataaatgtaGTGAATGTGACTTTAAGACGGTGAGGAAAAATCGACTTAAAGCAcacatcagaatccatactggtgatgaatataaatgtaaggaatgtgactacaaaacaccatggaagcacAGTTTAaatgaacatgtaaaaattcatactggcgatgagtataaatgtaatgagtgtgattttaaaacagcgAGAAAATTTCATCTTAAAGCGCACTTGAGaatccatacaggtgatgaatataagtgtaaggaatgtaactacaaaacaccatggaagcacAGTTTAaatgaacatgtaaaaattcatactggtgatgagtataaatgtaGTGAATGTGACTTTAAGACGGTGAGGAAAAATCGACTTAAAGCACACATCagaattcacactggtgatgaatataagtgtaaggaatgtgactacaaaacaccatggaagcagaATTTACAGAAACATCTAAATATTCATACTTGTaatgagtataaatgtaatgaatgcgaTTTTAAAACAGCGAGGAAAGATCAACTTAAAGCACACatgagaattcatactggtgatgaatataagtgtaaggaatga
Protein Sequence
MDVRCDESYLIKSEVVVNETFNSCGQYEGYGNEELKTEPADFKTAFKWEGEIQTDYINRSKCEYICNECNYTTQWKSNLVVHVKIHTNDKDKYKECDYKTWWKRSLKDHVKIHTGDGYKCNECDFKTVRKDQFKAHIRIHTGDEYKCKECDYKTTWKQSLNKHIKIHTGDEYKCKECDYRTIWKQSLKGHVKLHTGDKYKCNECDFKTVRKDQFKAHIRIHTGDEYKCKECDYKTTWKQSLNKHIKIHTGDEYKCIECDYRTIWKQSLKGHVKIHTGDKYKCNECDFKTARKDHLKAHIRIHTGDEYKCTECDYKTIWKQSLKGHVKIHTGDEYKCNECDYKTPWTQKFKEHMKFHTGEKYKCTECDFETVRKNQLRAHTRIHTDVEYKCNECDYKTSWTQSLNVHVKIHIGDKYKCNECDFKTARKHHLKAHVRIHTGDEYKCKECDYKTLWKQSLKEHVKIHTGEKYKCTECDFETVRKNQLRAHTRIHTDVEYKCNECDYKTSWTQSLNVHVKIHIGDKYKCNECDFKTARKHHLKAHVRIHTGDEYKCKECDYKTLWKQSLKEHVKIHSGDEYKCNVCDFKTVRKDQLRAHIRIHTGDEYKCHECDYKTLWMQKFKEHIKIHTGDEYKCNECDFKTARKFHLKAHLRIHTGDEYKCKECDYKTLWKQSLKEHVKIHTGDEYKCSECDFKTVRKNRLKAHIRIHTGDEYKCKECDYKTPWKQNLQKHVKIHTGDEYKCSECDFKTVRKNRLKAHIRIHTGDEYKCKECDYKTPWKHSLNEHVKIHTGDEYKCNECDFKTARKFHLKAHLRIHTGDEYKCKECNYKTPWKHSLNEHVKIHTGDEYKCSECDFKTVRKNRLKAHIRIHTGDEYKCKECDYKTPWKQNLQKHLNIHTCNEYKCNECDFKTARKDQLKAHMRIHTGDEYKCKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-