Lyun000119.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:5053189-5067102[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 0.053 0.75 10.5 0.9 1 23 12 34 12 34 0.98
2 32 5.3e-05 0.00076 19.9 1.5 1 23 39 61 39 61 0.99
3 32 0.053 0.75 10.5 0.9 1 23 66 88 66 88 0.98
4 32 0.00031 0.0044 17.5 1.5 1 23 93 115 93 115 0.99
5 32 0.00086 0.012 16.1 3.5 1 23 120 142 120 142 0.98
6 32 0.00041 0.0058 17.1 1.3 1 23 147 169 147 169 0.99
7 32 0.006 0.084 13.5 0.9 1 23 174 196 174 196 0.99
8 32 0.23 3.3 8.5 0.5 1 23 201 223 201 223 0.97
9 32 0.062 0.88 10.3 0.6 1 23 228 250 228 250 0.98
10 32 0.053 0.75 10.5 0.9 1 23 255 277 255 277 0.98
11 32 0.053 0.75 10.5 0.9 1 23 282 304 282 304 0.98
12 32 0.0011 0.016 15.8 1.4 1 23 309 331 309 331 0.99
13 32 0.00025 0.0035 17.8 1.5 1 23 336 358 336 358 0.99
14 32 0.19 2.7 8.8 0.6 1 23 363 385 363 385 0.97
15 32 0.027 0.38 11.4 1.4 1 23 390 412 390 412 0.99
16 32 0.002 0.029 14.9 3.0 1 23 417 439 417 439 0.98
17 32 1.9 26 5.6 0.7 1 14 444 457 444 458 0.90
18 32 0.031 0.44 11.2 1.3 1 23 621 643 621 643 0.97
19 32 0.00079 0.011 16.2 3.2 1 23 658 680 658 680 0.98
20 32 0.00024 0.0034 17.9 1.2 1 23 685 707 685 707 0.99
21 32 0.0062 0.087 13.4 1.5 1 23 712 734 712 734 0.99
22 32 0.00055 0.0077 16.7 4.5 1 23 739 761 739 761 0.99
23 32 0.005 0.071 13.7 0.9 1 23 766 788 766 788 0.98
24 32 7.1e-05 0.001 19.5 0.7 1 23 793 815 793 815 0.98
25 32 0.0012 0.017 15.7 4.9 1 23 820 842 820 842 0.99
26 32 0.13 1.8 9.3 1.1 1 23 847 869 847 869 0.98
27 32 0.034 0.49 11.1 1.0 1 23 874 896 874 896 0.98
28 32 0.041 0.59 10.8 1.0 1 23 901 923 901 923 0.98
29 32 0.035 0.49 11.1 0.6 1 23 928 950 928 950 0.98
30 32 0.66 9.4 7.0 2.9 1 23 955 977 955 977 0.98
31 32 0.51 7.2 7.4 5.3 1 23 982 1004 982 1004 0.98
32 32 0.00024 0.0034 17.9 2.1 1 23 1009 1031 1009 1031 0.99

Sequence Information

Coding Sequence
atgcaacatgtcaaaattcatacaggtgaggaatataagtgtaaagagtgtgattataaaactatatggaaaagagacctaatgcaacatgtcaaaattcatacaggcgaggaatataagtgtagagagtgtgattataaaactatacggAAAAGTTACCTAAAagcacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgcgattataagaCTATATGGAAAAGAgacctaatgcaacatgtcaaaattcatacaggcgatgaatataagtgtaaagaatgtgattataaaactatacggAAAAGAgacctaatgcaacatgtcaaaattcatacaggtgaggaacataagtgtaaagagtgtgattataaaactataaggAAAAGTTacctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaactatacagAAAAGAgacctaatgcaacatgtcaaaattcatacagatgatgaatataagtgtaaagaatgtgattataaaactatatggaaaagtgatctaatgaaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattacaaaacagtctGGAAAAGTGTTCTAATGCAACAtgccaaaattcatactggcgaggaatataagtgtaaagaatgtgattataaaactatatggaaaagagacctaatgcaacatgtcaatattcatacaggtgaggaatataagtgtaaagagtgtgattataaaactatatggaaaagagacctaatgcaacatgtcaaaattcatacaggtgaggaatataagtgtaaagagtgtgattataaaactatatggaaaagagacctaatgcaacatgtcaaaattcatacaggcgaggaatataagtgtagagagtgtgattataaaactatacggAAAAGAgacctaatgcaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaactgtacggaaaagagacctaatgcaacatgtcaaaattcatacaggtgaggaatataattgtaaagagtgtgattataaaactatatggaaaagagacctaatgcaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaactatatggaAAAGAGACCTAATGCAACATCTCAAAATGCATACAGGTGAGAaacataagtgtaaagagtgtgattataaaactatacggAAAAGAgacctaatgcaacatgtcaaaattcatacggacgaggaatataagtgtaaagagtgtgattataaaactatacagAAAAGTCTGGGCGATTTTCCCTCCGAGAGTGTATCTAATACAATGGATATGGACTCGGTAgactttattgaaagttgtggtataaaatcagaagtgattttaacagagacattttctttttgtggcaACTGTGAAGATTGGGGGAGTAAGAAACTGAAACCAGAGACAGTAGATTATGAAGAATCGCTTAAACCTAAAGAAGAAGATGATCTGGCAGAACCCATAGATTTACATGCTGCTCCGATGCAACAAGATTTTTGCAATGACTCTAATTTTATAACACTTGGAGAAAATTCTCTAATAGAAGTTTCAAAAGTTACTAAAAGCGTTAAGTACTCTTGTAAGGAACATAACTTTACAACCGAGTTAGAAAGTTCTATAAAAGAGCATACAAGCCTTCACAGTGATGGGtataatattgaagaatgtaatattaAGACGCCACAGATTTTTTCTCTATCATCACAGTTGAAAACTCCTAGAAGTTTGAAGAAATAtgcttgtaatgaatgtaattacaccacattgaacaaaaattatctaaGGAAACATGTTAAGATTCACAAAGGTTTAACACCACATGAAAATAATCATTCTGGTGATAAACATAAGTGtacaaaatgtgattataaaactgtacgcaAAAGCGagctaatgcaacatgtcaaaattcatacaggtaatgaatataagtgtaacgaatgtgattataaaactatacagAGAAGTTACCTAatgcaacatgttaaaattcataccggtgacaaatataagtgtaaacaatgtgattataaaacagtatggaaaagtaatctaacgcaacatgtcaaaattcatacaggttataaatataaatgtaaagaatgcgattataaaactgtacggaaatttcatttaaaggaacatctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtatcaaaaaatgttctaatgcaacatgttaaaattcataatggtgcagaatatgagtgtaaagaatgtgattataaaactgtacggaaaagtgatttaatgcaacatgtcaaaattcacacagatgatgaatataaatgtaaagaatgcaattataaaactgtacggaaatgtaatctaaaggaacatctcaaaattcatacaggtgatacaTATaggtgtaaagagtgtgattacaaAACTATATGGAAAACTTActtaatgcaacatgtcaaaattcatacaggtgataaatataagtgtaaagagtgtgattataaatcaatatggaaaactaatttaattcaACATGTCAAAtctcatactggtgacaaatataagtgtaaagaatgtgattataaaacagtatggaaaaatcttctaaaggaacatctcaaaattcatacaggtgatgaatataagtgtagagaatgtgattataaaacagtatggaaaagtgatctaatgcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactatatggaAAAAATGTCTAAAGGGACAtgtcagaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaatgtcatttaaagaaacatgccaatattcatacaggtgataaatataagtgtaaaaaatgtgattataaaactatacaaaaaagagatctaatgcaacatatcaaaattcatacaagtggTGAATGTTGCTAA
Protein Sequence
MQHVKIHTGEEYKCKECDYKTIWKRDLMQHVKIHTGEEYKCRECDYKTIRKSYLKAHIKIHTGDEYKCKECDYKTIWKRDLMQHVKIHTGDEYKCKECDYKTIRKRDLMQHVKIHTGEEHKCKECDYKTIRKSYLKEHVKIHTGEEYKCKECDYKTIQKRDLMQHVKIHTDDEYKCKECDYKTIWKSDLMKHVKIHTGDEYKCKECDYKTVWKSVLMQHAKIHTGEEYKCKECDYKTIWKRDLMQHVNIHTGEEYKCKECDYKTIWKRDLMQHVKIHTGEEYKCKECDYKTIWKRDLMQHVKIHTGEEYKCRECDYKTIRKRDLMQHVKIHTGDEYKCKECDYKTVRKRDLMQHVKIHTGEEYNCKECDYKTIWKRDLMQHVKIHTGEEYKCKECDYKTIWKRDLMQHLKMHTGEKHKCKECDYKTIRKRDLMQHVKIHTDEEYKCKECDYKTIQKSLGDFPSESVSNTMDMDSVDFIESCGIKSEVILTETFSFCGNCEDWGSKKLKPETVDYEESLKPKEEDDLAEPIDLHAAPMQQDFCNDSNFITLGENSLIEVSKVTKSVKYSCKEHNFTTELESSIKEHTSLHSDGYNIEECNIKTPQIFSLSSQLKTPRSLKKYACNECNYTTLNKNYLRKHVKIHKGLTPHENNHSGDKHKCTKCDYKTVRKSELMQHVKIHTGNEYKCNECDYKTIQRSYLMQHVKIHTGDKYKCKQCDYKTVWKSNLTQHVKIHTGYKYKCKECDYKTVRKFHLKEHLKIHTGDEYKCKECDYKTVSKNVLMQHVKIHNGAEYECKECDYKTVRKSDLMQHVKIHTDDEYKCKECNYKTVRKCNLKEHLKIHTGDTYRCKECDYKTIWKTYLMQHVKIHTGDKYKCKECDYKSIWKTNLIQHVKSHTGDKYKCKECDYKTVWKNLLKEHLKIHTGDEYKCRECDYKTVWKSDLMQHVKIHTGDEYKCKECDYKTIWKKCLKGHVRIHTGDEYKCKECDYKTVWKCHLKKHANIHTGDKYKCKKCDYKTIQKRDLMQHIKIHTSGECC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-