Lyun000516.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000058.1:1002670-1041401[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 55 0.34 4.9 7.9 0.1 1 21 62 82 62 83 0.95
2 55 0.03 0.43 11.3 3.6 1 23 168 190 168 190 0.99
3 55 0.059 0.83 10.4 5.5 1 23 195 217 195 217 0.98
4 55 0.0014 0.02 15.4 0.8 1 23 222 244 222 244 0.99
5 55 0.016 0.23 12.1 3.9 1 23 249 271 249 271 0.99
6 55 0.74 10 6.9 3.2 1 23 276 298 276 298 0.98
7 55 0.0018 0.025 15.1 1.5 1 23 303 325 303 325 0.99
8 55 0.021 0.29 11.8 0.8 1 23 330 352 330 352 0.98
9 55 0.81 11 6.8 3.0 1 23 362 384 362 384 0.98
10 55 0.51 7.2 7.4 3.7 1 23 389 411 389 411 0.98
11 55 0.027 0.38 11.4 2.7 1 23 416 438 416 438 0.99
12 55 0.019 0.27 11.9 4.8 1 23 443 465 443 465 0.99
13 55 0.51 7.2 7.4 3.7 1 23 470 492 470 492 0.98
14 55 0.0075 0.11 13.2 1.6 1 23 497 519 497 519 0.99
15 55 2 28 5.5 1.2 1 23 524 546 524 546 0.87
16 55 0.0014 0.02 15.5 2.0 1 23 551 573 551 573 0.99
17 55 0.61 8.7 7.1 6.2 1 23 578 600 578 600 0.99
18 55 0.0016 0.022 15.3 1.9 1 23 605 627 605 627 0.99
19 55 0.35 4.9 7.9 0.7 1 20 632 651 632 654 0.93
20 55 1.8 26 5.6 2.2 1 23 792 814 792 814 0.96
21 55 0.016 0.23 12.1 3.9 1 23 819 841 819 841 0.99
22 55 0.011 0.16 12.6 0.7 1 23 846 868 846 868 0.99
23 55 0.012 0.17 12.5 0.8 1 23 873 895 873 895 0.99
24 55 1.1 15 6.4 0.9 1 23 900 922 900 922 0.95
25 55 0.016 0.23 12.1 2.0 1 23 927 949 927 949 0.99
26 55 0.016 0.23 12.1 2.0 1 23 954 976 954 976 0.99
27 55 0.016 0.23 12.1 3.9 1 23 981 1003 981 1003 0.99
28 55 0.011 0.16 12.6 1.2 1 23 1008 1030 1008 1030 0.99
29 55 0.07 0.99 10.1 2.6 1 23 1035 1057 1035 1057 0.98
30 55 0.017 0.24 12.1 5.5 1 23 1062 1084 1062 1084 0.98
31 55 0.0072 0.1 13.2 1.5 1 23 1097 1119 1097 1119 0.99
32 55 0.68 9.6 7.0 1.2 1 23 1124 1146 1124 1146 0.97
33 55 0.011 0.16 12.6 5.2 1 23 1151 1173 1151 1173 0.99
34 55 0.037 0.53 11.0 0.1 1 21 1214 1234 1214 1235 0.95
35 55 0.68 9.7 7.0 4.2 1 23 1320 1342 1320 1342 0.98
36 55 0.018 0.25 12.0 1.3 1 23 1347 1369 1347 1369 0.98
37 55 0.022 0.31 11.7 2.0 1 23 1374 1396 1374 1396 0.99
38 55 0.014 0.2 12.3 2.1 1 23 1401 1423 1401 1423 0.99
39 55 0.03 0.43 11.3 3.6 1 23 1428 1450 1428 1450 0.99
40 55 0.45 6.4 7.6 4.9 1 23 1455 1477 1455 1477 0.98
41 55 0.0014 0.02 15.4 0.8 1 23 1482 1504 1482 1504 0.99
42 55 0.0096 0.14 12.8 1.9 1 23 1509 1531 1509 1531 0.99
43 55 0.66 9.3 7.0 4.5 1 23 1536 1558 1536 1558 0.98
44 55 0.0094 0.13 12.8 1.6 1 23 1563 1585 1563 1585 0.99
45 55 0.018 0.25 12.0 1.3 1 23 1590 1612 1590 1612 0.98
46 55 0.015 0.21 12.2 2.4 1 23 1617 1639 1617 1639 0.99
47 55 0.85 12 6.7 2.7 1 23 1644 1666 1644 1666 0.98
48 55 0.51 7.2 7.4 3.7 1 23 1671 1693 1671 1693 0.98
49 55 0.029 0.4 11.3 2.5 1 23 1698 1720 1698 1720 0.99
50 55 0.019 0.27 11.9 4.8 1 23 1725 1747 1725 1747 0.99
51 55 0.51 7.2 7.4 3.7 1 23 1752 1774 1752 1774 0.98
52 55 0.0075 0.11 13.2 1.6 1 23 1779 1801 1779 1801 0.99
53 55 0.021 0.3 11.7 1.3 1 23 1833 1855 1833 1855 0.99
54 55 2 28 5.5 1.2 1 23 1860 1882 1860 1882 0.87
55 55 0.0035 0.049 14.2 2.5 1 23 1887 1909 1887 1909 0.99

Sequence Information

Coding Sequence
ATGGATGTTGATTTTAAGGAAACTTGCCTAATAAAAACCGAAACTGTACAGGAAACGTTCTCACATTGTGGAAATTATGAAGATTATGGGaatgaagaattgaaaacagagaaatattttaaatgcgaAGAAGAGGATAGTCTTGTGGAGCTCACTGACAGATGTGCTATACCCATAcatcaatatatttgtaatgaatgtaattttattacaacaaagaAAGATCCTTTAATACAACACttgaacattattaaaaatgttcacTATTTTTGCAAAGAATGTAATTTCAAAACCCGCTTTGCATGTTCAGTAAAAGACCATTTCAGGATTCATAACGAGGTTATTTGTAGACATATTACTAAAAAGTGTAATATCAAGATGtcacaaattttcttattggcACTACAAAGTGATGACaaaagtatttgtaataaatgtgattataaaatacaaagaaaatggAGActaaaggaaaattttaaacttcATGCTAGTGgtgaatacaagtgtaaggaatgtgattataccACACGTTGGAAACATAGTTTAAAggaccatttaaaaattcatacagatgatgaaCATAAGTGTGATggatgtgattataaaacgcatacaaaacagagtctaaagagccatttaaaaattcatatgggtgatgaatataagtgtaatgaatgtgattataaaacaccgtgGCAAGGAAATCTAAAGCGACATTTGCAAACTCATACgagtgatgaatataagtgtaatgaatgtgattataaaacacataggaaacagagtctaaagggacatttaaaaatacatacgggtgatgaatataagtgtaatgaatgtgactataaaacgcattggaaacagagtttaaaggaccatttaaaaattcatactggcgatgaatataagtgtaatgaatgtgattataaaacaacgtgGAAAAGTAACCTGAaggatcatttaaaaattcatactggcgatgaatataagtgtaaagaatgcgattatacAACACGATGGAAACAGGCTCTAAAGAAccatttaataattcatacaggtgatgaatacaagtGtggtgaatataagtgtaacgaatgtggttttaaaacacattggaaacagagtttaaaggaccatttaaaaatacatacaggagatgagtataagtgtaatgaatgtgattataaaacacattggAAACAGAGTTTGaagaatcatttaaaaatacatacaggtgatgaatacaagtgtaaggaatgcgattataaaacacgaTGGAAACGGAGTCTAAAgaaccatttaaaaattcatacaggtgatgaatacaagtgtacggaatgtgattataaaacacaaagaaaatgtaGTCTAAaggatcatttaaaaattcatacaggtgacaaatataagtgcaatgagtgtgattataaaacacattggaaacagagtttaaagaaccatttaaaaattcatacgggagatgagtataagtgtaatgaatgtgattataaaacaacgtgGAAAACGAACCTAAaggatcatttaaaaattcatactggtgacgaatataagtgtaaggaatgcgatTATACAACAAGATGGAAACAGATTCTAAAGAACCATTTAacaattcatacaggtgatgaatacaagtgcaaggaatgtgattataaaacacaaaggaaatggagtctaaaggaacatttaaaaattcatactagtggtgaatacaagtgtaaggaatgtgattataaaacatgttGGAAGCATAGTCTAAAggaccatttaaaaattcatacaggtgatgaatataaatgtagtgaatgtgattataaaacacaacgaAAATGGAGTCTAAGgagccatttaaaaattcatatgggtgatgaatataagtgtaatgaatgtgattataaaacaccatggaaacagaatctaaagcaacatttgcCAATGCATAGCACTGtttctatAATGGATGtagattttaatgaaataaaaaccgaAACTGTACAGGAAACATTTTCATGTTGTGAAAATTATGAAGCTTATGGGaatgaagaattgaaaacaGAGATGGtagatatagaaaaatattttaaatgcgaAGACAACGATAATCTTGTACAGCTCAATGACGGATGCGCTGTACCCATACagcaatatatttgtaatggatgtaattttatttcaacagAGAAAGATTCTGTAATACAACACTtcaacaatattaattatttttgcgaagAATGTAATTCTGTGAAAGACCATTTCAGGATTCATAATGAGTTTGATTGTAGATATGttactaaaaaatgtaatatcaaGACATCACAAATTTTTCCTGTAGCACTACAAAGTGGTAACAACCATatttgtaaggaatgtgattataaaacacaactGAAATGGAGACTAAAGgagcatttaaaaattcatactgatgatgaatataagtgtaatgaatgtgattataaaacacataggaaacagagtctaaagggccatttaaaaattcatactggtgaggaatataagtgcaatgaatgtgattataaaacaccatggaaaacAAACCTAAAGATACACTtaaaaattcatagtgatcatgaatataagtgtaaagaatgtgattatacaacaccatggaaacagagtctaaaggaccatttaagaattcatacaggtgatgaatataagtgtaatgaatgtgattatagaacaCTGTGGAAAACGAACCTAAAGGAGCACTTacaaattcatactggtgatgaatataagtgcaaggaatgtgattatacaaCACGATGGAAACGGAGTCTAAAggatcatttaaaaatacattctggtgatgaatacaagtgtaaagaatgtgattatacaaCACGATGGAAACGGAGTCTAAAggaccatttaaaaattcatagaggtgatgaatataagtgtaatgaatgtgattataaaacccataggaaacagagtctaaagggccatttaaaaattcatacgggtgatcaatataagtgtaatgaatgtgattataaaacaccatggaaaacGAACCTAAAGACAcacttaaaaattcatactggtgataaacataagtgtaaggaatgtgattatacaacacgatggaaacagagtctaatgGACCATTTAAgaattcatacgggtgatgaatataagtgtaatgaatgtggttataaaacacATAGGAAACGGAGTCTAAAGgaccatttaaaatttcatacggTTGATGAATATAagattcatacgggtgatgaatataagtgtaatgaatgtgattataaaacaacttgGAAAACTAacctaaaggaacatttaaaaattcatactggtcatgaatataagtgtaatgaatgtgattataaaacacaatggaaacagaatctagaCGATCATTTAAACcgtcatactggtgatgaatataaatgtaaagaatgtgattataaaacacatagCAAACGGAGTCTAAAGtcccatttaaaaatccatactggtgataaatacaagtATTATGGGaatgaagaattgaaaacagagaaatattttaaatgcgaAGAAGAGGATAGTCTTGTGGAGCTCATTGACATATGTGCTATACCCATAcatcaatatatttgtaatgaatgtaattttattacaacaaagaaagattctttaatacaacacttgaacattattaaaaatgttcacTATTTTTGCAAAGAATGTAATTTCAAAACCCGCTTTGCATGTTCGGTAAAAGACCATTTCAGGATTCATAACGAGGTTATTTGTAGACATATTACTAAAAAGTGTAATATCAAGATGTCACAAATTTTCTCTTTGGCACTACAAAGTGATGACaaaagtatttgtaataaatgtgattataaaatacaaaggaAATGGAGCctaaaagaacaattaaaaattcatactagtggtgaatacaagtgtaaggaatgtgactataaaacacattggaaacagagtttaaagaaccatttaaaaattcatactggtgatgaatataagtgtaaagaatgcgattatacAACACGATGGAAACAGTCTCTAAAGAAccatttaataattcatacaggtgatgaatacaggtgtaaggaatgtgattttaaaacacaaaggaaacagagtctaaacggacatttaaaaattcatacgggtggtgaatataagtgtaaagaatgtgattataaaacacaaacgAAATGGagactaaaggaacatttaaaaattcatactagtggtgaatacaagtgtaaggaatgtgattataccACACGTTGGAAACATAGTTTAAAggaccatttaaaaattcatacagatgatgaaCATAAGTGTGATggatgtgattataaaacacatacAAAACAGAGGCTAGAgagccatttaaaaattcatatgggtgatgaatataagtgtaatgaatgtgattataaaacaccatggcaAGGAAATCTAAAGCGACATTTGCAAACTCATACgagtgatgaatataagtgtaatgaatgtgattataaaacacaaaggAAATGGagactaaaggaacatttaaaaattcatactaatggtgaatacaagtgtaaggaatgtgactataaaacacatTGGAAACGGAGTTTAAAgaaccatttaaaaattcatactggcgatgaatataagtgtaatgaatgtaattataaaacaacatggaaaaGTAACCTGAAgggtcatttaaaaattcatactggcgatgaatataaatgtaaagaatgcgattatacAACACGATGGAAACAGTCTCTAAAGAAccatttaataattcatacaggtgatgaatacaagtgtaaggaatgtgattttaaaacacaaagGAAACGGAGTCTAAAcggacatttaaaaattcatacgggtggtgaatataagtgtaacgaatgtgattttaaaacacattGGAAAGAGAGTTTAAAGgaccatttaaaaatacatacaggagatgagtataagtgtaatgaatgtgattataaaacacattggAAACAGAGTTTGaagaatcatttaaaaatacatacgggtgatgaatacaagtgtaaggaatgcgattataaaacacgaTGGAAACAGTCTCTAAAgaaccatttaaaaattcatacaggtgatgaatacaagtgtacggaatgtgattataaaacacaaagaaaatgtaGTCTAAaggatcatttaaaaattcatacaggtgacaaatataagtgcaatgagtgtgattataaaacacattggaaacagagtttaaagaaccatttaaaaattcatacaggagatgagtataagtgtaatgaatgtgattataaaacaacgtgGAAAACGAACCTAAaggatcatttaaaaattcatactggtgacgaatataagtgcatagagtgtgattataaaacatattggaaacagagtttaaagaaccataaaaaaattcatacaggagatgagtataagtgtaatgaatgtgattataaaacaacgtgGAAAACGAACCTAAAgggtcatttaaaaattcatactggtgatgaatataagtgtaaggaatgcgatTATACAACACGATGGAAACAGATTCTAAAAAACCATTTAacaattcatacaggtgatgaatacaagtgcaagcaatgtgattacaaaacacaaaGGAAAtggagtctaaaggaacatttaaaaattcatactagtGGTTAA
Protein Sequence
MDVDFKETCLIKTETVQETFSHCGNYEDYGNEELKTEKYFKCEEEDSLVELTDRCAIPIHQYICNECNFITTKKDPLIQHLNIIKNVHYFCKECNFKTRFACSVKDHFRIHNEVICRHITKKCNIKMSQIFLLALQSDDKSICNKCDYKIQRKWRLKENFKLHASGEYKCKECDYTTRWKHSLKDHLKIHTDDEHKCDGCDYKTHTKQSLKSHLKIHMGDEYKCNECDYKTPWQGNLKRHLQTHTSDEYKCNECDYKTHRKQSLKGHLKIHTGDEYKCNECDYKTHWKQSLKDHLKIHTGDEYKCNECDYKTTWKSNLKDHLKIHTGDEYKCKECDYTTRWKQALKNHLIIHTGDEYKCGEYKCNECGFKTHWKQSLKDHLKIHTGDEYKCNECDYKTHWKQSLKNHLKIHTGDEYKCKECDYKTRWKRSLKNHLKIHTGDEYKCTECDYKTQRKCSLKDHLKIHTGDKYKCNECDYKTHWKQSLKNHLKIHTGDEYKCNECDYKTTWKTNLKDHLKIHTGDEYKCKECDYTTRWKQILKNHLTIHTGDEYKCKECDYKTQRKWSLKEHLKIHTSGEYKCKECDYKTCWKHSLKDHLKIHTGDEYKCSECDYKTQRKWSLRSHLKIHMGDEYKCNECDYKTPWKQNLKQHLPMHSTVSIMDVDFNEIKTETVQETFSCCENYEAYGNEELKTEMVDIEKYFKCEDNDNLVQLNDGCAVPIQQYICNGCNFISTEKDSVIQHFNNINYFCEECNSVKDHFRIHNEFDCRYVTKKCNIKTSQIFPVALQSGNNHICKECDYKTQLKWRLKEHLKIHTDDEYKCNECDYKTHRKQSLKGHLKIHTGEEYKCNECDYKTPWKTNLKIHLKIHSDHEYKCKECDYTTPWKQSLKDHLRIHTGDEYKCNECDYRTLWKTNLKEHLQIHTGDEYKCKECDYTTRWKRSLKDHLKIHSGDEYKCKECDYTTRWKRSLKDHLKIHRGDEYKCNECDYKTHRKQSLKGHLKIHTGDQYKCNECDYKTPWKTNLKTHLKIHTGDKHKCKECDYTTRWKQSLMDHLRIHTGDEYKCNECGYKTHRKRSLKDHLKFHTVDEYKIHTGDEYKCNECDYKTTWKTNLKEHLKIHTGHEYKCNECDYKTQWKQNLDDHLNRHTGDEYKCKECDYKTHSKRSLKSHLKIHTGDKYKYYGNEELKTEKYFKCEEEDSLVELIDICAIPIHQYICNECNFITTKKDSLIQHLNIIKNVHYFCKECNFKTRFACSVKDHFRIHNEVICRHITKKCNIKMSQIFSLALQSDDKSICNKCDYKIQRKWSLKEQLKIHTSGEYKCKECDYKTHWKQSLKNHLKIHTGDEYKCKECDYTTRWKQSLKNHLIIHTGDEYRCKECDFKTQRKQSLNGHLKIHTGGEYKCKECDYKTQTKWRLKEHLKIHTSGEYKCKECDYTTRWKHSLKDHLKIHTDDEHKCDGCDYKTHTKQRLESHLKIHMGDEYKCNECDYKTPWQGNLKRHLQTHTSDEYKCNECDYKTQRKWRLKEHLKIHTNGEYKCKECDYKTHWKRSLKNHLKIHTGDEYKCNECNYKTTWKSNLKGHLKIHTGDEYKCKECDYTTRWKQSLKNHLIIHTGDEYKCKECDFKTQRKRSLNGHLKIHTGGEYKCNECDFKTHWKESLKDHLKIHTGDEYKCNECDYKTHWKQSLKNHLKIHTGDEYKCKECDYKTRWKQSLKNHLKIHTGDEYKCTECDYKTQRKCSLKDHLKIHTGDKYKCNECDYKTHWKQSLKNHLKIHTGDEYKCNECDYKTTWKTNLKDHLKIHTGDEYKCIECDYKTYWKQSLKNHKKIHTGDEYKCNECDYKTTWKTNLKGHLKIHTGDEYKCKECDYTTRWKQILKNHLTIHTGDEYKCKQCDYKTQRKWSLKEHLKIHTSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-