Lyun007371.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:11137070-11165946[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 0.69 9.8 7.0 4.6 1 23 91 113 91 113 0.98
2 32 1.9e-06 2.8e-05 24.4 1.0 1 23 118 140 118 140 0.99
3 32 2.2e-05 0.00031 21.1 1.2 1 23 145 167 145 167 0.99
4 32 0.1 1.4 9.6 2.0 1 23 172 194 172 194 0.98
5 32 0.00026 0.0037 17.8 1.2 1 23 199 221 199 221 0.98
6 32 0.35 4.9 7.9 3.9 1 23 226 248 226 248 0.99
7 32 0.025 0.35 11.5 1.2 1 23 253 275 253 275 0.98
8 32 5.4e-05 0.00077 19.9 1.4 1 23 280 302 280 302 0.99
9 32 0.12 1.6 9.4 3.2 1 23 307 329 307 329 0.99
10 32 0.025 0.35 11.5 1.2 1 23 335 357 335 357 0.98
11 32 0.00026 0.0037 17.8 1.2 1 23 362 384 362 384 0.98
12 32 0.35 4.9 7.9 3.9 1 23 389 411 389 411 0.99
13 32 0.025 0.35 11.5 1.2 1 23 416 438 416 438 0.98
14 32 5.4e-05 0.00077 19.9 1.4 1 23 443 465 443 465 0.99
15 32 0.12 1.6 9.4 3.2 1 23 470 492 470 492 0.99
16 32 0.19 2.7 8.8 0.8 1 23 498 520 498 520 0.98
17 32 0.0021 0.029 14.9 1.0 1 23 525 547 525 547 0.98
18 32 4e-05 0.00057 20.3 1.3 1 23 552 574 552 574 0.99
19 32 3.5 49 4.8 0.7 1 23 579 601 579 601 0.94
20 32 1.5 22 5.9 4.1 1 23 693 715 693 715 0.98
21 32 4.6e-05 0.00066 20.1 1.2 1 23 720 742 720 742 0.99
22 32 0.00032 0.0046 17.5 0.9 1 23 747 769 747 769 0.99
23 32 0.00014 0.0019 18.7 0.6 1 23 781 803 781 803 0.99
24 32 1.5 21 5.9 2.3 1 23 808 830 808 830 0.97
25 32 0.0007 0.0099 16.4 3.1 1 23 835 857 835 857 0.99
26 32 0.018 0.25 12.0 1.2 1 23 862 884 862 884 0.98
27 32 0.11 1.5 9.6 2.5 1 23 889 911 889 911 0.98
28 32 6.9e-05 0.00098 19.6 2.9 1 23 916 938 916 938 0.99
29 32 0.01 0.15 12.7 0.9 1 23 943 965 943 965 0.98
30 32 0.07 1 10.1 1.4 1 23 971 993 971 993 0.99
31 32 0.001 0.014 15.9 1.7 1 23 998 1020 998 1020 0.98
32 32 0.004 0.056 14.0 0.4 1 23 1025 1047 1025 1047 0.99

Sequence Information

Coding Sequence
ATGTTAGTTAGTAGTTCTCGTCTTCGTCAATACCCAAGAGCTTTATATCGACCAGTAATGGATGTCAaatgtaatgaaagttatccgATAAAATCGGAAGTGGTtataaacgaaacattttcctTTAAcggaaaatatgaagattatggGAGTGAAGAATTGAAAACTGAGCCGGTAGATTTTGAAGCACTTTTTAAATGGGAGGAAGATATTCATAAAACACAGTGGAAATCAAATCTAACGAAAcacgtaaaaattcatactgatcaatataagtgtaaggaatgtgattataaaacaccagtGAAGCACCGTTTTAAGGAACATTTTAaagttcatacaggtgatgagtataaatgtaaggaatgtgactataaaacagtgagaaaagaTAATCTGAAAGCAcacatcagaatccatactggtgatgaatataagtgtaatgtatgtgactataaaacagtgaataAATATCAACTTAAAGAACACATCagaattcacactggtgatcaatataagtgcaaggaatgtgactacaaaacagcatggaagaaaagttttaaagaacatctaaaaattcatactggtgattggtataaatgtaatgattgtaactttaaaacagtgagaaaaaaTAGTCTTAAAGCACACATCAGTATCCATACTGGTgatcaatataaatgtaaagaatgtgactacaaaacggTGTGTAAATATCAGGTTAAAGCACACAccagaatccatactggtgatgaatataagtgtaatgaatgtgacttcaAAACAACATGGAAGAGGAGTTTAAAggcacatgtaaaaattcatgctAGTGAttggtataaatgtaatgattgtaactataaaacagtgaagaaagataaacttaaagcacacatcagaattcatactggtgatgaatacaaatgtagtgaatgtgactataaaacagtgtggaaatgtCAACTTAATGCACATACTAAAACCCATACtggtggtgatgaatataagtgtaatgaatgtgacttcaAAACAACATGGAAGAGGAGTTTAAAggcacatgtaaaaattcatgctAGTGAttggtataaatgtaatgattgtaactttaaaacagtgagaaaaaaTAGTCTTAAAGCACACATCAGTATCCATACTGGTgatcaatataaatgtaaagaatgtgactacaaaacggTGTGTAAATATCAGGTTAAAGCACACAccagaatccatactggtgatgaatataagtgtaatgaatgtgacttcaAAACAACATGGAAGAGGAGTTTAAAggcacatgtaaaaattcatgctAGTGAttggtataaatgtaatgattgtaactataaaacagtgaagaaagataaacttaaagcacacatcagaattcatactggtgatgaatacaaatgtagtgaatgtgactataaaacagtgtggaaatgtCAACTTAATGCACATACTAAAACCCATACTggcggtgatgaatataagtgtaatgaatgcgagttcaaaacaatatggaaacagagtttaaaggaacatataaaaattcatactggtacagggtataaatgtaatgaatgtgaatTTAAAACACCCAGAAAAGATAAACTTAATGCACACAatagaattcatactggtgatgaatataaatgtaatgaatgttactataaaacagtgaggaaagatcaacttaaagcacacatccgaatccatactggtgctgaatataagtgtattgaatgtgacttcaaaacaatatggaagcagagtttaaaaaatcatataaaaattcatattgtaAGAAATTCTCATCTTCATGAATACCCAAGAGCTTTATATCGACCAAAGGATATAATGGATGACAaatgtaatgaaagttatccgataaaatcagaagtggttataaatgaaacattttccttTAACGGAAAATACGAAGGCTATGGCAGTGAAGAATTGAAAACAGAGCCGGTAGATTTTGAAGCACCTTTTAAATGCGAGGAAGCTGTTCATAAAACACAGTGGAAATCAAATCTAAcgaaacatgtaaaaattcatactgatcaatataagtgtaagaaatgtaattataaaacaccagtGAAGCGCCGTTTTACGGAGCATTTTAAagttcacacaggtgatgagtataaatgtaaggaatgtgactataaaacagtgagaaaagaTCGTCTGAAAGCACACAtcagaattcatactggtgatgaatataagtgtaatgtaTGTGCCTATAAAACAGTGAACAAATATCAACTTAAAGAAcacatcagaatccatactgaacatgttaaaattcatactggtgattggtataaatgtaatgattgTAACTTTAAAACCGTGATAAAAGATAATCTTAAAGCAcacatcagaatccatactggtgatcaatataagtgtaatgaatgtaacttCAAAACAACATGGAAGAAGAGTATAAAGAcgcatgtaaaaattcatggTAGTGAttggtataaatgtaatgaatgtcattataaaacagGGAAGAAAGATAAACTTAAAGCACACAtcagaattcatactggtgataaatacaaatgtaatgaatgtgactataagaCAGTGTGGAAAAGTCAATTTAATGCACATACTAAAATCCattctggtgatgaatataagtgtaatgaatgtgacttcaAAACAACATGGAAGAAGAGTTTAAAGACACATGTAAAACTTCACGCTCGTGAttggtataaatgtaatgaatgtcaCTATAAAACAGTGACGAAAGATAAACTTAAAGCACACAtcagaattcatactggtgataaatacaaatgtaatgaatgtgactataaaacagtgtggaaatatCAACTTAATGCACATActaaaatccatactggtggtgataaatataagtgtaatgaatgtgagttcaaaacaatatggaagcagagtttaaagaaacatataaaaattcatactggtaatgggtataaatgtaatgaatgtgaatTTAAAACATCCAGAAAAGATAAACTTAATGCACACAatagaattcatactggtgatgaatacaaatgtaatgaatgtaactataaaacagtgtggaaggATCAACTTAGCGCACACATCCGAATCCATACGGGTGCTGAACATAAGTGTattgaatgtgactttaaaacaatatggaagcagagtttaaaaaatcatgtaaaaattcatattggtgatgagtataagtgtattgaatgtgacttcaaaacaatatggaagcagagtttaaaaaatcatgtaaaaattcgtaATGTAAGAAAGTAA
Protein Sequence
MLVSSSRLRQYPRALYRPVMDVKCNESYPIKSEVVINETFSFNGKYEDYGSEELKTEPVDFEALFKWEEDIHKTQWKSNLTKHVKIHTDQYKCKECDYKTPVKHRFKEHFKVHTGDEYKCKECDYKTVRKDNLKAHIRIHTGDEYKCNVCDYKTVNKYQLKEHIRIHTGDQYKCKECDYKTAWKKSFKEHLKIHTGDWYKCNDCNFKTVRKNSLKAHISIHTGDQYKCKECDYKTVCKYQVKAHTRIHTGDEYKCNECDFKTTWKRSLKAHVKIHASDWYKCNDCNYKTVKKDKLKAHIRIHTGDEYKCSECDYKTVWKCQLNAHTKTHTGGDEYKCNECDFKTTWKRSLKAHVKIHASDWYKCNDCNFKTVRKNSLKAHISIHTGDQYKCKECDYKTVCKYQVKAHTRIHTGDEYKCNECDFKTTWKRSLKAHVKIHASDWYKCNDCNYKTVKKDKLKAHIRIHTGDEYKCSECDYKTVWKCQLNAHTKTHTGGDEYKCNECEFKTIWKQSLKEHIKIHTGTGYKCNECEFKTPRKDKLNAHNRIHTGDEYKCNECYYKTVRKDQLKAHIRIHTGAEYKCIECDFKTIWKQSLKNHIKIHIVRNSHLHEYPRALYRPKDIMDDKCNESYPIKSEVVINETFSFNGKYEGYGSEELKTEPVDFEAPFKCEEAVHKTQWKSNLTKHVKIHTDQYKCKKCNYKTPVKRRFTEHFKVHTGDEYKCKECDYKTVRKDRLKAHIRIHTGDEYKCNVCAYKTVNKYQLKEHIRIHTEHVKIHTGDWYKCNDCNFKTVIKDNLKAHIRIHTGDQYKCNECNFKTTWKKSIKTHVKIHGSDWYKCNECHYKTGKKDKLKAHIRIHTGDKYKCNECDYKTVWKSQFNAHTKIHSGDEYKCNECDFKTTWKKSLKTHVKLHARDWYKCNECHYKTVTKDKLKAHIRIHTGDKYKCNECDYKTVWKYQLNAHTKIHTGGDKYKCNECEFKTIWKQSLKKHIKIHTGNGYKCNECEFKTSRKDKLNAHNRIHTGDEYKCNECNYKTVWKDQLSAHIRIHTGAEHKCIECDFKTIWKQSLKNHVKIHIGDEYKCIECDFKTIWKQSLKNHVKIRNVRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-