Lyun019307.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002652.1:425464-449445[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 37 9.7 1.4e+02 3.4 2.6 1 23 103 125 103 125 0.97
2 37 3.3 47 4.8 1.2 1 23 130 152 130 152 0.92
3 37 0.00041 0.0058 17.1 2.7 1 23 157 179 157 179 0.99
4 37 9.9e-06 0.00014 22.2 0.9 1 23 184 206 184 206 0.99
5 37 0.00016 0.0023 18.4 1.4 1 23 211 233 211 233 0.99
6 37 2.3e-05 0.00032 21.1 1.1 1 23 238 260 238 260 0.99
7 37 0.00016 0.0023 18.4 1.4 1 23 265 287 265 287 0.99
8 37 0.00027 0.0038 17.7 2.5 1 23 292 314 292 314 0.98
9 37 0.0036 0.052 14.2 0.7 1 23 319 341 319 341 0.98
10 37 5.4e-05 0.00076 19.9 2.6 1 23 346 368 346 368 0.98
11 37 6.3e-05 0.00089 19.7 1.6 1 23 373 395 373 395 0.99
12 37 6.2e-05 0.00088 19.7 1.8 1 23 400 422 400 422 0.99
13 37 4.1 59 4.5 3.5 1 23 427 449 427 449 0.96
14 37 3e-05 0.00042 20.7 2.1 1 23 454 476 454 476 0.99
15 37 0.22 3.1 8.6 0.0 1 20 550 569 550 571 0.94
16 37 0.00042 0.0059 17.1 1.1 1 23 645 667 645 667 0.98
17 37 0.041 0.57 10.9 1.6 1 23 672 694 672 694 0.99
18 37 0.00079 0.011 16.2 0.6 1 23 699 721 699 721 0.98
19 37 0.15 2.1 9.1 2.7 1 23 726 748 726 748 0.98
20 37 0.0038 0.054 14.1 3.3 1 23 753 775 753 775 0.99
21 37 0.036 0.51 11.0 1.2 1 23 780 802 780 802 0.98
22 37 0.00014 0.002 18.6 1.4 1 23 807 829 807 829 0.99
23 37 7.5 1.1e+02 3.7 0.8 1 23 834 856 834 856 0.83
24 37 0.048 0.68 10.6 3.7 1 23 861 883 861 883 0.96
25 37 0.0039 0.055 14.1 1.2 1 23 888 910 888 910 0.99
26 37 0.13 1.9 9.2 0.0 1 21 980 1000 980 1001 0.95
27 37 0.79 11 6.8 1.4 1 23 1057 1079 1057 1079 0.97
28 37 0.0075 0.11 13.2 1.2 1 23 1084 1106 1084 1106 0.98
29 37 2.9 41 5.0 1.9 1 23 1165 1187 1165 1187 0.93
30 37 0.051 0.73 10.5 1.6 1 23 1192 1214 1192 1214 0.98
31 37 0.18 2.6 8.8 0.9 1 23 1219 1241 1219 1241 0.98
32 37 0.00027 0.0039 17.7 1.8 1 23 1246 1268 1246 1268 0.99
33 37 4.7 66 4.4 0.3 1 23 1273 1295 1273 1295 0.93
34 37 0.051 0.73 10.5 1.6 1 23 1300 1322 1300 1322 0.98
35 37 3.3 46 4.9 1.0 1 23 1327 1349 1327 1349 0.89
36 37 0.048 0.68 10.6 3.7 1 23 1354 1376 1354 1376 0.96
37 37 0.004 0.056 14.0 1.1 1 23 1381 1403 1381 1403 0.99

Sequence Information

Coding Sequence
ATGGATGTTGATTATAACAAAAGTTATCCCGTTAAATCGGAAGTGTTTGTTAAAGAAACATTTTCCTATTGTGGAAAAACTGAAGATTATGAGAATGAAGAAGTCAATTTTGATTCATCTCTTAAATGCGAAGAAGAAGATAATCTTGATGATCTCACTGATACATGTGGTGTTTTCATACAACATTACagttgtaatgaatCACCACAGttaaaaactccaaaaaatgGTGACAAGGGATACGATTATGAAACACTACAGAAACGGGGTCTAAAGAAACAAtggaaaattcatactggtgatgaatataagtgtagcaaatgttattataaaacacagtggaaacaaagtctaaaggagcatgtgaaaattcatactggagatgaatataagtgtgatgaatgtgattttaagacactgtggaaacagaatctaaagaaacatgcgaaaattcatactgatgttgaatataagtgtaatgaatgtgattataaaacacagcaGAAACgaaatctaaaggaacatcagaaaattcatactggtcaaacatataagtgtaacgaatgtggctataaaacagtgaggagagatggtttaaataaacatatgaaaattcatggaaatgaggaatataagtgtaatgaatgtgactataaaacaatgAGGAAAGATAGCTTAAAGgatcatatcaaaattcatagaggtgatgaatataagtgtaatgaatgtgactataaaacagtgaggagagatggtttaaataaacatatgaaaattcatggaaatgaggaatataagtgtaatgaatgtgactataaaacaatgAGGAAAGATAGCTTAAAGgatcatatcaaaattcatagaggtgatgaatataagtgtaatgaatgtgactataaaacagtgagaaaaggTACTCTAAAGAAACATAAGAAAATTCATGCagataatgaatataagtgtaatgaatgtgactatgaAACATTGAGGAAAGATAGCTTAAAGGATCATATCAaagttcatacaggtgatgaatataactgtaataaatgtgactataaaacggtgAGGAAAGATACTTTAAAgagacatatgaaaattcacggagataataaatataagtgtaaagaatgtgactatcaAACAGTGAGAAACGATAGCTTAAAGGATCATATGAAAAGTCAtaaaggtgatgaatataagtgtagtgaatgtgaatataaaacagtAAGGAAAGGTACTCTAAAgagacatatgaaaattcacggAGAGGATGattataagtgtaaggaatgcgatTATAAGACACAGTGGAAAAGGTGTCTAAATGATCATGTAAAGATTCATACTggagatgaatataagtgtaatgaatgtgaatataaaacgGTGAGAAAAGACACTCTAAAgagacatatgaaaattcatataaatGATATAAtCTCTGTAATGGATGTCGATTATAATGAAAGTTTTCCCATTAAATCAGAAGTGATTGTAGAGGAAACTTTTTCCTATTGTGTAAAATCTGAAGattgtggaaatgaagaattgaaaatgGAGTCGGTAGATTTCGGTGCTTCTCTTAAATGCGAAGAAGACAATCTCGATGTGCTCACTGATACATGTGGTGTACCCATACTTCAttacatttgtaatgaatgcaattttattacaacagtGAAAGATTCACTCATAGAACATTTGGAAATTACTAAagatgttcaatatttttgtaaggaatgtaGCTTTAAAACACCATTTGGATGTTTGATAAAAGAGCATATCAGGATTCATAACAGAGTTGATTGTAAAGcgcCACAATTAAAAACTCCTAAAAGTGATGAGAAATATACTTGTAAAGTTTGCTGTTTTGAAACACAatggaaacaaagtctaaagAAGCATGTAAGAATTCACACTGGGGAGGAatttaagtgtaaggaatgtgattataaaacacgccGGGAATGGAATCTCAAGGAGCATGGAagaattcacactggtgatgagtataagtgtaaagaatgtgattataaaaccatATGGAATCGGAATCTAAAGGAGCATAGGAAAATTCATGCTGGTgctaaatataagtgtaaggaatgtaattatacagCACGCCGGGAATGGAATCTAAAAGAACATGGAAGAATTCATACAagtgatgaatttaagtgtaaaaaatgtgattataaaacacggtggaaacaaagtctaaaggaacatgtaaaaattcatagtggagatgaatataagtgtaaggaatgtgattacaaatcaCACCGGGAACggaatctaaaggaacatgtgagaattcatactggtgatgaatataagtgcaatgaatgtgattttaaaacacggTGGAAACGGAATTTGAAGGatcatttaataattcatactggagatgaatataagtgtaaggaatgtgattataaaacaagcCGGGAACggaatctaaaggaacatgcgAGAATTCATACTGGCAATGactataagtgtgaagaatgtgattataaaacgctaTGGAAAAcaagtctaaaggaacatgtaaaactCCATACTggagatgaatataagtgtaacgaatgtgattttaaaacactacggaaacataatctaaaggatcatgtgaaaattcatactggtgatgaatataagtgtaacaaatgtgattataaaacggcgtggaaaggttctctaaagcgacatataaaaattcatTGTATAATGGATGTCGATTATAACGAAAGTTTTTCCATTAAATCAGAAGTGGTTGTAGAAGAAACATTTACCTATGGTGGAAAATCTGAAGATAGTGGgaatgaagaattgaaaatCGAGCCAGTAGATTTCGATGCACTTCTTAAGTGCGAAGAAGAAGATAATCTTGATGAGCTCACTGATACATGTGGTGTGCCCATACATCGttacatttgtaatgaatgtaattttataacaacaggaaaagattctctaatagaacatttgaaaattacaaaaaaccttcaatatttttgtaaggaatgtaGCTTTAAAACTCCATTTGGATGTGTGATTAAAGAACATATCAGGATTCATAACAGAGATGATTGTAGACgtattactaaaaaatgtaatattaaaactTCACAGTTAAAAACTCCAAAAAGTTATGAGAAATATACATGTAAGAAATGTGATTTTCAAACAcgatggaaacagagtctaaagatCCATTTAGATATTCACTCTGTTGAGAAGTTTAAGTGTAAGGGATGTAATTATGAAACAAACAAGGAACgaaatctaaaggaacatgggagaattcatacaggtgatgaatataactgtaaggaatgtgattataaaacactgtggaaaaagagtctaaaagaacatgtaaaaattcatactggtgatgaatataaatgtaaagaatgtgattttaaaactgtttggAAACAGACTCTAAAGTgtcatgtgaaaattcatactggtgatgaatataagtgtaaggaatgtgactataaaacactgtggaaaaAGAGCCTaaagcaacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacacgatggaaacaaagtctaagggaacatgtaaaaattcatactggagatgaatacaagtgtaacgaatgtgattttaaaacagtgtggaaacagaCTCTAAATAatcatgtgaaaattcatactggtgatgaatataagtgtaaggaatgtgactataaaacagtgaggaaacaGAGTCTACAGAatcatgtgaaaattcatactggtgctaaatatatgtgtaaaaaatgtaattacaaagcACGTTGGGAATggaatctaaaggaacatgaaATAATTCATACtaatgatgaatataaatgtaaggaatgtgattataaaacacgatggaaacaaagtctaagggaacatgtaaaaattcatactggagacgaatataagtgtaatgaatgtgattataaaacactatggaaaacaagtctaaaggaacatgtaaaaattcatactggagatgaatataagtgtaacgaatgtgattttaaaacactacGGAAACATAATTTGAAGGatcatgtgaaaattcatactggtgatgaatataagtgtaacaaatgtgattataaaacggcgTGGAAAGCGTCTCTAAAgagacatataaaaattcatggGAATAGTAAATACCtattaaagtaa
Protein Sequence
MDVDYNKSYPVKSEVFVKETFSYCGKTEDYENEEVNFDSSLKCEEEDNLDDLTDTCGVFIQHYSCNESPQLKTPKNGDKGYDYETLQKRGLKKQWKIHTGDEYKCSKCYYKTQWKQSLKEHVKIHTGDEYKCDECDFKTLWKQNLKKHAKIHTDVEYKCNECDYKTQQKRNLKEHQKIHTGQTYKCNECGYKTVRRDGLNKHMKIHGNEEYKCNECDYKTMRKDSLKDHIKIHRGDEYKCNECDYKTVRRDGLNKHMKIHGNEEYKCNECDYKTMRKDSLKDHIKIHRGDEYKCNECDYKTVRKGTLKKHKKIHADNEYKCNECDYETLRKDSLKDHIKVHTGDEYNCNKCDYKTVRKDTLKRHMKIHGDNKYKCKECDYQTVRNDSLKDHMKSHKGDEYKCSECEYKTVRKGTLKRHMKIHGEDDYKCKECDYKTQWKRCLNDHVKIHTGDEYKCNECEYKTVRKDTLKRHMKIHINDIISVMDVDYNESFPIKSEVIVEETFSYCVKSEDCGNEELKMESVDFGASLKCEEDNLDVLTDTCGVPILHYICNECNFITTVKDSLIEHLEITKDVQYFCKECSFKTPFGCLIKEHIRIHNRVDCKAPQLKTPKSDEKYTCKVCCFETQWKQSLKKHVRIHTGEEFKCKECDYKTRREWNLKEHGRIHTGDEYKCKECDYKTIWNRNLKEHRKIHAGAKYKCKECNYTARREWNLKEHGRIHTSDEFKCKKCDYKTRWKQSLKEHVKIHSGDEYKCKECDYKSHRERNLKEHVRIHTGDEYKCNECDFKTRWKRNLKDHLIIHTGDEYKCKECDYKTSRERNLKEHARIHTGNDYKCEECDYKTLWKTSLKEHVKLHTGDEYKCNECDFKTLRKHNLKDHVKIHTGDEYKCNKCDYKTAWKGSLKRHIKIHCIMDVDYNESFSIKSEVVVEETFTYGGKSEDSGNEELKIEPVDFDALLKCEEEDNLDELTDTCGVPIHRYICNECNFITTGKDSLIEHLKITKNLQYFCKECSFKTPFGCVIKEHIRIHNRDDCRRITKKCNIKTSQLKTPKSYEKYTCKKCDFQTRWKQSLKIHLDIHSVEKFKCKGCNYETNKERNLKEHGRIHTGDEYNCKECDYKTLWKKSLKEHVKIHTGDEYKCKECDFKTVWKQTLKCHVKIHTGDEYKCKECDYKTLWKKSLKQHVKIHTGDEYKCKECDYKTRWKQSLREHVKIHTGDEYKCNECDFKTVWKQTLNNHVKIHTGDEYKCKECDYKTVRKQSLQNHVKIHTGAKYMCKKCNYKARWEWNLKEHEIIHTNDEYKCKECDYKTRWKQSLREHVKIHTGDEYKCNECDYKTLWKTSLKEHVKIHTGDEYKCNECDFKTLRKHNLKDHVKIHTGDEYKCNKCDYKTAWKASLKRHIKIHGNSKYLLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-