Lyun007169.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:5573089-5585996[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.48 6.8 7.5 4.9 1 23 63 85 63 85 0.98
2 29 0.19 2.6 8.8 2.5 1 23 90 112 90 112 0.98
3 29 0.0002 0.0028 18.1 0.5 1 23 117 139 117 139 0.99
4 29 0.00054 0.0077 16.8 0.9 1 23 144 166 144 166 0.99
5 29 0.088 1.2 9.8 2.3 1 23 171 193 171 193 0.99
6 29 0.0001 0.0014 19.1 0.7 1 23 198 220 198 220 0.99
7 29 0.23 3.3 8.5 1.4 1 23 225 247 225 247 0.98
8 29 4.1e-05 0.00058 20.3 1.1 1 23 252 274 252 274 0.99
9 29 0.033 0.47 11.1 4.0 1 23 279 301 279 301 0.99
10 29 0.0014 0.019 15.5 2.1 1 23 367 389 367 389 0.98
11 29 3.1 43 5.0 3.0 1 23 393 415 393 415 0.95
12 29 0.013 0.18 12.5 0.1 5 23 424 442 423 442 0.96
13 29 0.0029 0.041 14.5 0.2 1 23 474 496 474 496 0.99
14 29 0.041 0.58 10.8 0.7 1 23 501 523 501 523 0.99
15 29 4.9e-06 6.9e-05 23.2 1.2 1 23 528 550 528 550 0.99
16 29 0.0089 0.13 12.9 1.1 1 23 555 577 555 577 0.98
17 29 0.088 1.2 9.8 0.7 1 23 582 604 582 604 0.98
18 29 0.0019 0.027 15.0 0.5 1 23 609 631 609 631 0.99
19 29 2.2e-05 0.00031 21.1 0.9 1 23 636 658 636 658 0.99
20 29 1.7e-05 0.00024 21.5 1.0 1 23 690 712 690 712 0.99
21 29 0.00063 0.0089 16.5 0.7 1 23 717 739 717 739 0.98
22 29 0.05 0.71 10.6 2.3 1 23 771 793 771 793 0.98
23 29 0.05 0.71 10.6 2.3 1 23 817 839 817 839 0.98
24 29 1.2e-05 0.00018 21.9 0.5 1 23 844 866 844 866 0.99
25 29 0.021 0.3 11.8 0.9 1 23 871 893 871 893 0.99
26 29 0.1 1.4 9.6 0.8 1 23 898 920 898 920 0.98
27 29 1.2e-05 0.00018 21.9 0.5 1 23 925 947 925 947 0.99
28 29 0.021 0.3 11.8 0.9 1 23 952 974 952 974 0.99
29 29 0.1 1.4 9.6 0.8 1 23 979 1001 979 1001 0.98

Sequence Information

Coding Sequence
ATGGATGTTGAgtgtaatgaaagttatctgaTAAAATCGGAAATAAAACAGGAAGTGgttgtaaatgaaacatttagtggaaaatatgaagattatggAAGTGAAGAATTGCCGAAAAATTTTGGAGCAGCTTTTAAACAGGAAAGGGATATGGATATGGAGCACACAAATACATCCAAATgtgaatatatttgtaatgactgtaattataaatcaaggtggaaacatagtctaaagcaccatgtgaaaattcatactggtaatgaatataggtgtaaggaatgtgactacaaaactccaTGGAACCATAATtttaaggaacatgtaaaaattcatactggtgatgaatataaatgtaatgaatgcaaCTATAAAGCAGTAAAGAAATATAGTCTTGAAGCACACATacgaattcatactggtgatgaatttaaatgtaatgaatgtgaatttaaaacagtgaggaaagatCGACTTACCGCAcacatcagaatccatactggcgatgaatataagtgtaaggaatgtgactacaaaacaccatggaaccAGAGTTTTAAGCAACATATAAAACGACATACTGGCGATAgctataaatgtaatgaatgtgactttaaaacagcAAGGAAAGATCGACTTACCGCAcacatcagaatccatactggtgatgaatataagtgtaaggagtgTAACTAccaaacaccatggaaacagagttttaaggaacatataaaaattcatactggtaatggctataaatgtaatgtatgtGACTTTCAAACAACAAGACAAGATTATCTCAAAGCACACCTCAGAATCCATACTGGCgttaaatataagtgtaaagaatgtgattttaaaacaacatggcaacatagtctaaagaaacatttgaatattcatagtgaaatgGATGTCGAATGTAATGAAAGTTTTCCGATAAAGTCGGAAGTGGTtataaacgaaacattttcctTTAATGGGAGATATGAAGattatggGAGTCGAGAATTGAAAACGGAGCCCATAGATTTTGAAGCAGCTTTTAAATGGGAGGAAGATATCCATATGGAGCACACTAATAGTTCTAAATGTGAATATatgtgtaatgaatgtaattataaaacacagtcGAAAAAGAATCTAAtgaaacatgtgaaaattcataatgatcaatataagtgtaaggaatgtgattataaaacagcatggaacCACCGTTTtaaggaacatgttaaaattcatgcaggtgatgagtttaaatataatgaatgtgactataaaacagcgAGACAGGATCAACTTGATGCACATATGAGAAGTCATACAGGTGATGCATATAAGTGTATTGAATGTGACTTCAAAACAATATGGAAGCAGAGTTTCAAGGGGCATGTTAAAATTCATGTTGGTGAttggtataaatgtaatgaatgtgactataaaacagcgTGGAAGGATCAACTTAATGCACATgtcagaatccatactggtgatgaatataaatgtaatgaatgtgaattcaaaacaatatggaagcagaatttaaaggtacatataaaaattcatactggtgattgGTATacatgtaatgaatgtgactataaaacaacgAGGAAGGAACAACTTAATGCACATATCAGAAGccatactggtgataaatataagtgtaatgaatgtgacttcaaaacaacatggaagcagaatttaaaggcacatgtaaaaattcatactagcAATGGGTATAAGTGTGATGAATGTGACTTCAAAACAATATGGAAGAAGACATTAAAggcacatgtaaaaattcatactggtgattggtataaatgtaatgaatgtgactataaaacagcatggaagGATCAACTTAATGAACATATCAGAagccatactggtgatgaatataagtgtaacgaatgtgacttCAAATCAGCGAGAAAATATCAACTTAATGCACAtatcagaatccatactggtgatgaatataagtgtattgAATGTGACTTCAAAACAATATGGAAGCAGAGTTTCAAGgtgcatgtaaaaattcatgctGGTGAttggtataaatgtaatgaatgtaactataaaacagcgAGGAAGAATCAACTTAATGCACATATCAGAATCcataccggtgatgaatataagtgtaatgaatgtgacttcaaaacaataagaaagcAGAGTTTAAAGGCACATGTACTaattcatactggcgatgaatataaatgttatgaacgtgactataaaacagtgaggaaagatCAACTTAATGCACGTATCAGaattcatactgatgatgaatataagtgtaatgaatgtaacttCAAAACAATATGGAAGCACAATTTAAAggcacatgtaaaaattcatactagtGATgggtataaattgaggaaagatCAACTTAATGCACGTATCAGaattcatactgatgatgaatataagtgtaatgaatgtaacttCAAAACAATATGGAAGCACAATTTAAAggcacatgtaaaaattcatactagtGATgggtataaatgtaatgaatgtgactataaaacagcgAGGAAGAACGAACTTAATGCACAtatcagaatccatactggtgatgaatataagtgtaatgaatgtgacttcaaaacaatatggaagcagaatttaaaggtacatctaaaaattcatactggtgattggtataaatgtaatgaatgtgagtataaaacaCCGTGGAAGCAGAGTTTAAAAAaccatgtaaaaattcatactggtgatgaatataagtgtaatgaatgtgactataaaacagcgAGGAAGAACGAACTTAATGCACAtatcagaatccatactggtgatgaatataagtgtaatgaatgtgacttcaaaacaatatggaagcagaatttaaaggtacatctaaaaattcatactggtgattggtataaatgtaatgaatgtgagtataaaacaCCGTGGAAGCAGAGTTTAAAAAaccatgtaaaaattcatactggtgatgaatataagtgtaagaaagTGACTACAAAATACCAAGGAAGCAGAATTTTAAAgaacttataa
Protein Sequence
MDVECNESYLIKSEIKQEVVVNETFSGKYEDYGSEELPKNFGAAFKQERDMDMEHTNTSKCEYICNDCNYKSRWKHSLKHHVKIHTGNEYRCKECDYKTPWNHNFKEHVKIHTGDEYKCNECNYKAVKKYSLEAHIRIHTGDEFKCNECEFKTVRKDRLTAHIRIHTGDEYKCKECDYKTPWNQSFKQHIKRHTGDSYKCNECDFKTARKDRLTAHIRIHTGDEYKCKECNYQTPWKQSFKEHIKIHTGNGYKCNVCDFQTTRQDYLKAHLRIHTGVKYKCKECDFKTTWQHSLKKHLNIHSEMDVECNESFPIKSEVVINETFSFNGRYEDYGSRELKTEPIDFEAAFKWEEDIHMEHTNSSKCEYMCNECNYKTQSKKNLMKHVKIHNDQYKCKECDYKTAWNHRFKEHVKIHAGDEFKYNECDYKTARQDQLDAHMRSHTGDAYKCIECDFKTIWKQSFKGHVKIHVGDWYKCNECDYKTAWKDQLNAHVRIHTGDEYKCNECEFKTIWKQNLKVHIKIHTGDWYTCNECDYKTTRKEQLNAHIRSHTGDKYKCNECDFKTTWKQNLKAHVKIHTSNGYKCDECDFKTIWKKTLKAHVKIHTGDWYKCNECDYKTAWKDQLNEHIRSHTGDEYKCNECDFKSARKYQLNAHIRIHTGDEYKCIECDFKTIWKQSFKVHVKIHAGDWYKCNECNYKTARKNQLNAHIRIHTGDEYKCNECDFKTIRKQSLKAHVLIHTGDEYKCYERDYKTVRKDQLNARIRIHTDDEYKCNECNFKTIWKHNLKAHVKIHTSDGYKLRKDQLNARIRIHTDDEYKCNECNFKTIWKHNLKAHVKIHTSDGYKCNECDYKTARKNELNAHIRIHTGDEYKCNECDFKTIWKQNLKVHLKIHTGDWYKCNECEYKTPWKQSLKNHVKIHTGDEYKCNECDYKTARKNELNAHIRIHTGDEYKCNECDFKTIWKQNLKVHLKIHTGDWYKCNECEYKTPWKQSLKNHVKIHTGDEYKCKKVTTKYQGSRILKNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-