Lyun015741.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002186.1:230980-234592[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 1.3 18 6.2 1.0 1 20 63 82 63 84 0.93
2 35 0.00039 0.0055 17.2 0.9 1 23 140 162 140 162 0.98
3 35 0.0075 0.11 13.2 1.3 1 23 167 189 167 189 0.98
4 35 3.4 48 4.8 0.6 1 23 194 216 194 216 0.83
5 35 5.9e-05 0.00084 19.8 0.9 1 23 221 243 221 243 0.99
6 35 0.0073 0.1 13.2 0.8 1 23 248 270 248 270 0.99
7 35 0.12 1.7 9.3 0.9 1 23 275 297 275 297 0.97
8 35 0.11 1.5 9.5 2.8 1 23 302 324 302 324 0.98
9 35 1.5e-05 0.00021 21.7 2.5 1 23 329 351 329 351 0.99
10 35 0.0026 0.037 14.6 2.0 1 23 356 378 356 378 0.99
11 35 0.16 2.2 9.0 2.7 1 23 383 405 383 405 0.98
12 35 1.5e-05 0.00021 21.7 2.5 1 23 410 432 410 432 0.99
13 35 0.18 2.5 8.9 3.2 1 23 437 459 437 459 0.98
14 35 0.02 0.29 11.8 1.4 1 23 464 486 464 486 0.98
15 35 3e-05 0.00043 20.7 3.0 1 23 491 513 491 513 0.99
16 35 0.0026 0.037 14.6 2.0 1 23 518 540 518 540 0.99
17 35 0.012 0.17 12.5 0.9 1 23 545 567 545 567 0.98
18 35 3.4 48 4.8 0.6 1 23 572 594 572 594 0.83
19 35 5.9e-05 0.00084 19.8 0.9 1 23 599 621 599 621 0.99
20 35 0.0072 0.1 13.2 1.4 1 23 626 648 626 648 0.99
21 35 0.12 1.7 9.3 0.9 1 23 653 675 653 675 0.97
22 35 3.5 49 4.8 0.4 1 19 680 698 680 699 0.81
23 35 0.0024 0.034 14.7 0.5 1 23 716 738 716 738 0.98
24 35 0.11 1.5 9.5 2.8 1 23 743 765 743 765 0.98
25 35 1.5e-05 0.00021 21.7 2.5 1 23 770 792 770 792 0.99
26 35 0.0026 0.037 14.6 2.0 1 23 797 819 797 819 0.99
27 35 0.16 2.2 9.0 2.7 1 23 824 846 824 846 0.98
28 35 1.5e-05 0.00021 21.7 2.5 1 23 851 873 851 873 0.99
29 35 0.29 4.2 8.2 3.0 1 23 878 900 878 900 0.98
30 35 0.0012 0.017 15.7 0.5 1 23 905 927 905 927 0.99
31 35 0.00055 0.0078 16.7 2.0 1 23 932 954 932 954 0.99
32 35 0.00035 0.005 17.4 1.3 1 23 959 981 959 981 0.99
33 35 0.00082 0.012 16.2 1.4 1 23 986 1008 986 1008 0.98
34 35 0.19 2.6 8.8 1.2 1 23 1013 1035 1013 1035 0.97
35 35 0.34 4.9 7.9 0.5 1 23 1040 1062 1040 1062 0.96

Sequence Information

Coding Sequence
atggaAGTTGATTTCCTTGAAAGTTCTGAAATAAAATCCGAAGTGATTTTAAcacaaacattttcattttgtggaAAATACGAAGATTGTGGTGGCCAAGAACTGAAAACAGAACCAGATCATCTAGAATCATTTAAAATTGAGGAATATGCTCTTGAAAAGGACATGGATACATATACTGGACCATATTgttgtaatgaatgtaaattTACGACAATGGAAAAAGATTCTTTAATAGAACATTTGACAATGGCCAacaatgttcaatatttttgtgagaaatgtaactttaaaacgcAGTTAGAATGTTCTAAGAAAGAGCATTTCAAATTTCACAACCTACTAGATGATAAAAATACTGAAGAATGTAAAACACAGTTAAGATCACAGTCCCATTTTCCAAAAAGTGGCTCCAAATatatatgtaatgtatgtaactATACCACAATAAACCAAAATTATCTAAAgagacatgtaaaaattcatataggtgataaatataagtgtaaagaatgtgattataaaacagtatggaaaagttctctaaagcaacatgtcaaaattcatacaggtgacgaatataagtgtaatgaatgtgattataaaacagtgtggagaAAACGTATAATggaacatattaaaattcacatgAGTGATAAATATCAGTgtcaagaatgtgattataaaacagtacagaaataTCTTCTCAAGGAACATATTAGAATTCATACGGGTAATCAATATAAGTGcgaagaatgcgattataaaacacaatggaaagatagtctaaagcaacatatcagaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacacttcGGGGAGATCTTCTAAAGCAGcatgttaaaattcatgcaggtgaagaatataagtgcaaagactgtgactataaaacagtgtggaaaaattgtctaatgaaccatatcaaaattcatgcaggcgaagaatataaatgcaaagaatgtgattataaaacagtacggaaagatagtctaaagcaacatatcaaaactcatacaggcgatgaatataagtgtaaagaatgtgattataaaacagtaaggaaaaatcgtctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgcaaagaatgtgactataaaacagtgtggaaaaattgtctaatgaaccatatcaaaattcatgcaggcgatgaatataaatgcaaagaatgtgactataaaacagtacgcAAAGatagtctaaagcaacatatcaaaactcacacaggcgatgaatataagtgtaaagaatgtaactataaaacggtgtggaaacatcttctaaagcaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacacttcGGGGAGATcttctaaagcaacatatcaaaactcatacaggcgatgaatataagtgtaaagaatgtaactataaaacagtacgcAAAGatagtctaaagcaacatatcaaaactcatacaggcgatgaatataagtgtaaagaatgtgattataaaacagtaaggaaaaatcgtctaaaggaacatgtcaaaattcatacaggtgacgaatataagtgtaatgaatgtgattataaaacagtatggaaaagttcTCTAAAGCAACatgctaaaattcatacaggtgacgaatataagtgtaatgaatgtgattataaaacagtgtggagaAAACGTATAATggaacatattaaaattcacatgAGTGATAAATATCAGTgtcaagaatgtgattataaaacagtacagaaataTCTTCTCAAGGAACATATTAGAATTCATACGGGTAAtcaatataagtgcaaagaatgcgattataaaacacaatggaaagatagtctaaagcaacatatcagaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacacttcGGGGAGATCTTCTAAAGCAGcatgttaaaattcatgcaggtgaagaatataagtgcaaagaatgtgattataaaacacttcGGGGAGatcttctaaagcaacatgCTTGGAAAgttagtctaaaggaacattttaaaattcatgcaggcgatgaatataagtgtaaagaatgtgattatgaaacagTGTCGACAGatcttctaaagcaacatgctaaaattcatacaggtgaagaatataagtgcaaagactgtgactataaaacagtgtggaaaaattgtctaatgaaccatatcaaaattcatgcaggcgaagaatataaatgcaaagaatgtgattataaaacagtacggaaagatagtctaaagcaacatatcaaaactcatacaggcgatgaatataagtgtaaagaatgtgattataaaacagtaaggaaaaatcgtctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgcaaagaatgtgactataaaacagtgtggaaaaattgtctaatgaaccatatcaaaattcatgcaggcgatgaatataaatgcaaagaatgtgactataaaacagtacgcAAAGatagtctaaagcaacatatcaaaactcacacaggcgatgaatataagtgtaaagaatgtaactataaaacagtgtggaaacatcttctaaagcaacatgctaaaattcatacaggtgatgaatataagtgtaaagaatgtgattatgaaacagTGTCGACAGATCTTCTAAAGCAGCATGTCAAAGTTCATGCAGacgatgagtataagtgtaaagaatgtgattataaaacaatgcaGAAATATCTTCTAAAGGtacatcttaaaattcatacgggtgatgaatataagtgtaaagaatgtgattataaaacagtacggaaaagTCGTCTAATGGAACATGttagaattcatacaggtgaagcatataagtgcaaagaatgtgattataaaacagtacggaaaagTCGTTTaatggaacatgtcaaaattcataccggtgaagaatataagtgcaaggaatgtgattataaaactgtatggaaagttagtctaaaggaacattttaaaattcatgtgggtgatgaatataaatgtaaagaatgtgattataaaacagtgtggaggGCTgttctaaagcaacatgtcaaaattcataaggttgatgaatataagtgtaaagaatcgTGCAGGCGAGtacaagtgtaa
Protein Sequence
MEVDFLESSEIKSEVILTQTFSFCGKYEDCGGQELKTEPDHLESFKIEEYALEKDMDTYTGPYCCNECKFTTMEKDSLIEHLTMANNVQYFCEKCNFKTQLECSKKEHFKFHNLLDDKNTEECKTQLRSQSHFPKSGSKYICNVCNYTTINQNYLKRHVKIHIGDKYKCKECDYKTVWKSSLKQHVKIHTGDEYKCNECDYKTVWRKRIMEHIKIHMSDKYQCQECDYKTVQKYLLKEHIRIHTGNQYKCEECDYKTQWKDSLKQHIRIHTGDEYKCKECDYKTLRGDLLKQHVKIHAGEEYKCKDCDYKTVWKNCLMNHIKIHAGEEYKCKECDYKTVRKDSLKQHIKTHTGDEYKCKECDYKTVRKNRLKEHVKIHTGEEYKCKECDYKTVWKNCLMNHIKIHAGDEYKCKECDYKTVRKDSLKQHIKTHTGDEYKCKECNYKTVWKHLLKQHVKIHTGDEYKCKECDYKTLRGDLLKQHIKTHTGDEYKCKECNYKTVRKDSLKQHIKTHTGDEYKCKECDYKTVRKNRLKEHVKIHTGDEYKCNECDYKTVWKSSLKQHAKIHTGDEYKCNECDYKTVWRKRIMEHIKIHMSDKYQCQECDYKTVQKYLLKEHIRIHTGNQYKCKECDYKTQWKDSLKQHIRIHTGDEYKCKECDYKTLRGDLLKQHVKIHAGEEYKCKECDYKTLRGDLLKQHAWKVSLKEHFKIHAGDEYKCKECDYETVSTDLLKQHAKIHTGEEYKCKDCDYKTVWKNCLMNHIKIHAGEEYKCKECDYKTVRKDSLKQHIKTHTGDEYKCKECDYKTVRKNRLKEHVKIHTGEEYKCKECDYKTVWKNCLMNHIKIHAGDEYKCKECDYKTVRKDSLKQHIKTHTGDEYKCKECNYKTVWKHLLKQHAKIHTGDEYKCKECDYETVSTDLLKQHVKVHADDEYKCKECDYKTMQKYLLKVHLKIHTGDEYKCKECDYKTVRKSRLMEHVRIHTGEAYKCKECDYKTVRKSRLMEHVKIHTGEEYKCKECDYKTVWKVSLKEHFKIHVGDEYKCKECDYKTVWRAVLKQHVKIHKVDEYKCKESCRRVQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-