Lyun002685.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000380.1:1070932-1085906[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 39 0.58 8.3 7.2 1.3 5 23 102 120 101 120 0.96
2 39 0.015 0.22 12.2 1.3 1 23 145 167 145 167 0.98
3 39 1.8 26 5.6 4.6 1 23 172 194 172 194 0.98
4 39 0.006 0.085 13.5 1.1 1 23 199 221 199 221 0.99
5 39 5.1e-05 0.00072 20.0 1.4 1 23 226 248 226 248 0.99
6 39 0.00055 0.0078 16.7 1.9 1 23 253 275 253 275 0.99
7 39 3.8e-05 0.00054 20.4 1.6 1 23 280 302 280 302 0.99
8 39 0.22 3.1 8.5 1.5 1 23 307 329 307 329 0.98
9 39 0.00064 0.0091 16.5 1.1 1 23 361 383 361 383 0.97
10 39 0.21 3 8.6 2.2 1 23 388 410 388 410 0.98
11 39 0.006 0.085 13.5 1.1 1 23 415 437 415 437 0.99
12 39 0.052 0.74 10.5 0.9 1 23 442 464 442 464 0.98
13 39 3.8e-05 0.00054 20.4 1.6 1 23 469 491 469 491 0.99
14 39 0.016 0.22 12.1 1.7 1 23 496 518 496 518 0.98
15 39 3.8e-05 0.00054 20.4 1.6 1 23 523 545 523 545 0.99
16 39 0.22 3.1 8.5 1.5 1 23 550 572 550 572 0.98
17 39 0.071 1 10.1 2.6 1 23 577 599 577 599 0.98
18 39 0.00064 0.0091 16.5 1.1 1 23 612 634 612 634 0.97
19 39 0.21 3 8.6 2.2 1 23 639 661 639 661 0.98
20 39 0.006 0.085 13.5 1.1 1 23 666 688 666 688 0.99
21 39 0.052 0.74 10.5 0.9 1 23 693 715 693 715 0.98
22 39 1.1 15 6.4 3.0 1 23 720 742 720 742 0.98
23 39 0.039 0.55 10.9 1.3 1 23 747 769 747 769 0.98
24 39 0.071 1 10.1 0.8 1 23 881 903 881 903 0.98
25 39 0.0069 0.098 13.3 1.1 1 23 935 957 935 957 0.98
26 39 0.051 0.72 10.6 0.4 1 23 962 984 962 984 0.98
27 39 0.0081 0.12 13.1 1.6 1 23 989 1011 989 1011 0.98
28 39 0.083 1.2 9.9 3.1 1 23 1016 1038 1016 1038 0.98
29 39 0.063 0.89 10.3 1.0 1 23 1043 1065 1043 1065 0.98
30 39 0.063 0.89 10.3 1.0 1 23 1070 1092 1070 1092 0.98
31 39 0.0012 0.017 15.6 2.0 1 23 1097 1119 1097 1119 0.99
32 39 0.0077 0.11 13.1 1.2 1 23 1124 1146 1124 1146 0.99
33 39 0.069 0.97 10.1 1.0 1 23 1151 1173 1151 1173 0.98
34 39 0.0042 0.059 14.0 2.0 1 23 1178 1200 1178 1200 0.99
35 39 0.31 4.3 8.1 1.6 1 23 1205 1227 1205 1227 0.98
36 39 0.63 8.9 7.1 2.1 1 23 1232 1254 1232 1254 0.98
37 39 0.11 1.6 9.4 0.9 1 23 1259 1281 1259 1281 0.98
38 39 0.063 0.89 10.3 3.3 1 23 1286 1308 1286 1308 0.98
39 39 0.027 0.38 11.4 1.7 1 23 1313 1335 1313 1335 0.99

Sequence Information

Coding Sequence
ATGAATATCGACTCGGTAAACTTTATTGACAgttgtgctataaaatcagaagtgattttaacagagacattttctttttttggtaaatatgAGGATTGTGGAAGTAACGAACTGAAAACGGAGCCAATAAAATATGAAGAATCACttaaatgtaaagaagaaaatgatttgACAGCACCCATAGATATACATGCTGCTCCGACGCAAGAAGATTTTTGTAATGActctaattttataacaattggaGAAAATTCTCTAATAGAACTTGTAAGAGatactaaaaatgttaaatactcTTATAAGGAATGTCACTTTACAACCCGTTCTGAAAGTTCTATAAAAGAGCATATGAGGATTCACAATTACGgatataatattgaagaatgtaattttaagatgcCGCAGTTGAAAATTCCAAAAAGTGAGAATGAAtatgtttgtaatgaatgtaattacacaaCATTGAACAAAGATTATCTAAGGAAACATGAGAAGATTCACAAAGGTACTTCATACAGTTGCGAGAAATGTGACTACAATACACGGTGGAAACATCACTTCACAGCACATGCAAAAATTCattctggtaatgaatataagtgtaaagaatgtgactataaaacagcatggaaaaataatttaaatagacatgtcaaaattcatactggtgttgaatataaatgtaaagaatgtgattataaaacagtacaaaagaGTCAGCTAAACGAACATCTGAAAATTCAtgctggtgatgaatataaatgtaaacaatgtgattacaaatcagtacaaaaaaataatctaaatcaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtacgaaaaaGTCAGCTAAacgaacatctcaaaattcatactggtgatgaatataagtgtaaacaatgtgtttataaaacagtatggaaaaataatctaaacagacatgtaaaaattcattctggtaatgaatataagtgtaaagaatatGATAATAAATCTGTGTCAAAAATTCGTATAAACGAAcatctgaaaattcatactggtgatgaatataagtgtaatgaatgtgattataaaacaattcagaaaagttatctaatgcaacatgtcacaATTCATACTCGTTACaaatataactgtaaagaatgtgattataaaacagtgtggaaaacacatctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgactataaaacagcatggaaaaataatctaaacagacatgtcaaaattcatactggtgacgaatataagtgtaatgaatgtgattataaaacaatatggaaaaatcttctaaaggcACATCTCAAAaatcatactggtgacaaatataaatgtaaagaatgtgattataaaacagtacgaaagagtCAGCTAAACGAAcatctgaaaattcatactggtgatgaatataagtgtaaacaatgtgattataaaacagtatggaaaaataatctaaacagacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtacgaaagagtCAGCTAAACGAAcatctgaaaattcatactggtgatgaatataagtgtaaacaatgtgtttataaaacagtatggaaaaataatctaaacagacatgtaaaaattcattctggtaatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaacacatctaaaggaacatgtcaaaattcatataaacgaacatgtgaaaattcatactggtgatgaatataagtgtaatgaatgtgattataaaacaattcagaaaagttatctaatgcaacatgtcacaATTCATACTCGTTACaaatataactgtaaagaatgtgattataaaacagtgtggaaaacacatctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagcatggaaaaataatctaaacagacatgtcaaaattcatactggtgacgaatataagtgtaatgaatgtgattataaaacaatatggaaaaatcttctaaaggcACATCTCAAAaatcatactggtgacaaatataaatgtaaaaaatgtaattataaatcgGTGTGGGAAAcacatctaaaggaacatgtcaaaattcatacaggtgaagaatatacgtgtaaacaatgtgattataaaacagtatggaaaaataatctaaacagacatgccaaaattcatacagACTTTATTGAAAGTAGTGCtataaaatctgaagtgattttaacagagacGTTTTCTTTTTGTGGTAAATACAAAGGTAAGAATGATTCTAACACTACGACTGTggttttaaacaatgaaatgtCACTTTTAGATTGTGGGAGTAACGAACTGAAAACGGAGTCAATAAATGATGAAGAAACGCTTAAACATGAAGAAGAACATGACCTGGAAGACCACACCAATACATTTGCTGCTCCGATGCAACAAGATTTTTGTAATGACTCTAGTTTTACAACAATTGGAGAAAATTCTCAAATAGAACTTTTGAgagttactaaaaatgttaaatactcTTGTAAGGAATGCAATTTTATAACCAAGTTAGAAAGTTCTATAAAAGAGCATATGAAGATTCATAATGATGgatataatattgaagaatgtaatattaAGATGCCACAGATTTTCTCTCTATCATCACAGTTGAAAACTCCAAGAAGCGAAAATGAAtatgtttgtaatgaatgtaattacaccacattgAACAAAGATTATCTAAGGAAACATGTGAAGATTCACAAAGTTACTTCATATAGTTGcgagaaatgtgattataatacacGGTGGAAAGATCAGTTAACGGCACATGCAAAAATTCATTAtgttaatgaatataagtgtaaaaaatgtgattataaaacagtatggaaaagtaatctaaaggaacatgtcaaaattcattctggtaatgaatataagtgtaaagaatgtgattataaaacaatatggaaaaatcatctaaagcaacatgtcaaaattcattctggtaatgaatataagtgtaaagaatgtgattataagacaatatggaaatatcttctaaaggaacatgtcaaaattcattctggtaatgattataagtgtaaagaatgtgattataagacaatatggaaatatcttctaaaggaacatgtcaaaattcattctggtaatgattataagtgtaaagaatgtgattataaaactatacagAAAAGgtatctaatgcaacatgtcaaaattcattctggtaatgaatataagtgtaaagaatgcgattataaaacaaattggaaATGGAATTTGATGCTACATATCAAAACTCattctggtaatgaatataaatgtaaagaatgtgattataagacaatatggaaaaatcttctaaaggaacatctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatacggaaaaatcgtctaaaggaacatgtcaaaattcattctggtaatgaatacaagtgtttagaatgtgattataaaacaaaatggaaaaggtatctaatgcaacatgtcaaaattcattctagtaatgaatataagtgtttcgaatgtgattataaaacaaaatggaaaaggtatctaatgcaacatgccaaaattcattctggtaatgaatataagtgtaaagaatgtgattataagacaaTATGGAAGtatcttctaaaggaacatgccaaaattcattctggcaatgaatataagtgtaaagaatgtgattataaaacgatatGGAAATGTAATCTAAAccgacatgtcaaaattcattctggtaatgaatataagtgtaaagaatgtgattataaaacaatatggaaaaatcttctaaagaaacatctcaaaattcattctGGTGTTGAATAG
Protein Sequence
MNIDSVNFIDSCAIKSEVILTETFSFFGKYEDCGSNELKTEPIKYEESLKCKEENDLTAPIDIHAAPTQEDFCNDSNFITIGENSLIELVRDTKNVKYSYKECHFTTRSESSIKEHMRIHNYGYNIEECNFKMPQLKIPKSENEYVCNECNYTTLNKDYLRKHEKIHKGTSYSCEKCDYNTRWKHHFTAHAKIHSGNEYKCKECDYKTAWKNNLNRHVKIHTGVEYKCKECDYKTVQKSQLNEHLKIHAGDEYKCKQCDYKSVQKNNLNQHVKIHTGDEYKCKECDYKTVRKSQLNEHLKIHTGDEYKCKQCVYKTVWKNNLNRHVKIHSGNEYKCKEYDNKSVSKIRINEHLKIHTGDEYKCNECDYKTIQKSYLMQHVTIHTRYKYNCKECDYKTVWKTHLKEHVKIHTGEEYKCKECDYKTAWKNNLNRHVKIHTGDEYKCNECDYKTIWKNLLKAHLKNHTGDKYKCKECDYKTVRKSQLNEHLKIHTGDEYKCKQCDYKTVWKNNLNRHVKIHTGDEYKCKECDYKTVRKSQLNEHLKIHTGDEYKCKQCVYKTVWKNNLNRHVKIHSGNEYKCKECDYKTVWKTHLKEHVKIHINEHVKIHTGDEYKCNECDYKTIQKSYLMQHVTIHTRYKYNCKECDYKTVWKTHLKEHVKIHTGEEYKCKECDYKTAWKNNLNRHVKIHTGDEYKCNECDYKTIWKNLLKAHLKNHTGDKYKCKKCNYKSVWETHLKEHVKIHTGEEYTCKQCDYKTVWKNNLNRHAKIHTDFIESSAIKSEVILTETFSFCGKYKGKNDSNTTTVVLNNEMSLLDCGSNELKTESINDEETLKHEEEHDLEDHTNTFAAPMQQDFCNDSSFTTIGENSQIELLRVTKNVKYSCKECNFITKLESSIKEHMKIHNDGYNIEECNIKMPQIFSLSSQLKTPRSENEYVCNECNYTTLNKDYLRKHVKIHKVTSYSCEKCDYNTRWKDQLTAHAKIHYVNEYKCKKCDYKTVWKSNLKEHVKIHSGNEYKCKECDYKTIWKNHLKQHVKIHSGNEYKCKECDYKTIWKYLLKEHVKIHSGNDYKCKECDYKTIWKYLLKEHVKIHSGNDYKCKECDYKTIQKRYLMQHVKIHSGNEYKCKECDYKTNWKWNLMLHIKTHSGNEYKCKECDYKTIWKNLLKEHLKIHTGDEYKCKECDYKTIRKNRLKEHVKIHSGNEYKCLECDYKTKWKRYLMQHVKIHSSNEYKCFECDYKTKWKRYLMQHAKIHSGNEYKCKECDYKTIWKYLLKEHAKIHSGNEYKCKECDYKTIWKCNLNRHVKIHSGNEYKCKECDYKTIWKNLLKKHLKIHSGVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-