Lyun000030.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:395936-398215[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.1e-05 0.00015 22.1 1.6 1 23 138 160 138 160 0.98
2 21 1.5e-05 0.00021 21.6 2.1 1 23 165 187 165 187 0.99
3 21 8.7e-06 0.00012 22.4 1.7 1 23 219 241 219 241 0.99
4 21 0.00092 0.013 16.0 1.6 1 23 246 268 246 268 0.99
5 21 2.7e-05 0.00038 20.9 1.4 1 23 273 295 273 295 0.99
6 21 0.00015 0.0021 18.5 1.4 1 23 300 322 300 322 0.99
7 21 0.0013 0.019 15.5 1.2 1 23 327 349 327 349 0.98
8 21 0.0075 0.11 13.2 1.0 1 23 354 376 354 376 0.99
9 21 0.00092 0.013 16.0 1.6 1 23 381 403 381 403 0.99
10 21 9.8e-06 0.00014 22.2 0.8 1 23 408 430 408 430 0.98
11 21 0.001 0.015 15.9 1.4 1 23 435 457 435 457 0.99
12 21 4.6e-05 0.00065 20.1 3.1 1 23 462 484 462 484 0.99
13 21 0.016 0.23 12.1 3.0 1 23 489 511 489 511 0.98
14 21 0.00058 0.0081 16.7 1.1 1 23 516 538 516 538 0.99
15 21 0.0029 0.041 14.5 0.9 1 23 543 565 543 565 0.99
16 21 0.00058 0.0081 16.7 1.1 1 23 570 592 570 592 0.99
17 21 0.0022 0.032 14.8 1.4 1 23 597 619 597 619 0.98
18 21 8.6e-06 0.00012 22.4 1.8 1 23 624 646 624 646 0.99
19 21 0.00081 0.011 16.2 0.8 1 23 651 673 651 673 0.99
20 21 4.3e-06 6.1e-05 23.4 1.7 1 23 678 700 678 700 0.99
21 21 0.59 8.4 7.2 2.3 1 23 705 727 705 727 0.97

Sequence Information

Coding Sequence
atggatattaattcaatagaaaattgtataataaaatctgaagtgattttaacagaaacatttgcATTTTCTGGAAAATACGAAGAACCAGCAGTTTATGaagaattgtttaaatgtaaagaagATTCTGTAGAACAGATTGATATACATGCTTCCCCGAtgcaatgtattaatgaatgtAATGTTACAATGGACAATCATTGTCcgataaaacatttgaaaattactaaaaataatcattattcTTGTAAGGAATATAATTTTACCACGCAGTTAGATTCTTCCATAAATGAGCACTTCAACATTCACAACGGAATAGATGGTCAATATATTACCGAGAAATGTAATTCTAAGACACCAAGGATTTTCTCTTTAACACCAGAGCCCAAAACTACAACAATTCGcaacaaatacatttgtaatgaatgtaatcaAACCACATTCAACAAAAGCAATCTAAGGagacatatcaaaattcataaaggtggtaaatataagtgtaacgaatgtaattataaaacatcacaGCAAAGTTATCTAAAccaacacatcaaaattcatactggtgatggatataggtgtaaagaatgcaattataaaactttGTGGAAAAATCGAATAAAGGAACATGttagaattcatacaggtgatggatataagtgtaaagaatgtgattataaaacagtacggaaaagtaatctaacggaacacttaaaaattcatacaggtaatgagtataagtgtaaagaatgtgattataaaacagtgcagaaaaatcgactaaaggaacatgtcagaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtacggaaaatTAATCTAACgcaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcaaaaaagtcGACTAAatgaacacatcaaaattcatacggatgatgaatataagtgtaaagaatgtgattataaatcagtGCGGAAAGGTcgactaaaggaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaaccgtGTGGAAAAAccaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgttcaGAAAAATcgactaaaggaacatgttagaattcatacaggtgatgaatatgagtgtaacgaatgtgattataaaacagtacggaaaagtaatctaacggaacacttaaaaattcatacaggtgatgagtataagtgtacagaatgtgattataaaacagtgcagaaaaatcgactaaaggaacatgtcagaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacagtacggaaaatTAATCTAACGCAtcacataaaaattcatacaggtgatgagtataagtgtaaagaatgtgattataaaacagtgcacaAAAATcgactaaaggaacatgtcagcattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgcctggaaaagtaatctaaaggaacacatcaaaatgcatacaggtgatgaatataagtgtaaagaatgtgattataaagctGTGCAGAAAAATcgactaaaggaacatgtcagaattcatactggtgataaatataagtgtaaagaatgtgattataaaactgcctggaaaagtaatctaaaggaacacatcaaaatgcatacaggtgatgaatataggtgtaaagaatgtgattataaaactgtgcagAAAAATCGACTAAAGGAACATGctagaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtacgaaaaagtaatctaacggaacacataaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtttggaaaagtaatctaacggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggaaaagtaatctaaaggaacacatcaaaattcatacaggtgataaatataagtgtaaacaatgtgattatatAACTGtgtggaaaaattgtctaaagaaacatgttgaaattcatacaggtgaaaaatAG
Protein Sequence
MDINSIENCIIKSEVILTETFAFSGKYEEPAVYEELFKCKEDSVEQIDIHASPMQCINECNVTMDNHCPIKHLKITKNNHYSCKEYNFTTQLDSSINEHFNIHNGIDGQYITEKCNSKTPRIFSLTPEPKTTTIRNKYICNECNQTTFNKSNLRRHIKIHKGGKYKCNECNYKTSQQSYLNQHIKIHTGDGYRCKECNYKTLWKNRIKEHVRIHTGDGYKCKECDYKTVRKSNLTEHLKIHTGNEYKCKECDYKTVQKNRLKEHVRIHTGDEYKCKECDYKTVRKINLTQHIKIHTGDEYKCKECDYKTVQKSRLNEHIKIHTDDEYKCKECDYKSVRKGRLKEHVKIHTGDEYKCKECDYKTVWKNQLKEHIKIHTGDEYKCKECDYKTVQKNRLKEHVRIHTGDEYECNECDYKTVRKSNLTEHLKIHTGDEYKCTECDYKTVQKNRLKEHVRIHTGDEYKCKDCDYKTVRKINLTHHIKIHTGDEYKCKECDYKTVHKNRLKEHVSIHTGDEYKCKECDYKTAWKSNLKEHIKMHTGDEYKCKECDYKAVQKNRLKEHVRIHTGDKYKCKECDYKTAWKSNLKEHIKMHTGDEYRCKECDYKTVQKNRLKEHARIHTGDEYKCKECNYKTVRKSNLTEHIKIHTGDEYKCKECDYKTVWKSNLTEHIKIHTGDEYKCKECDYKTVRKSNLKEHIKIHTGDKYKCKQCDYITVWKNCLKKHVEIHTGEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-