Lyun016601.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002264.1:1033109-1052967[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.0026 0.037 14.6 0.8 1 23 64 86 64 86 0.98
2 30 0.3 4.2 8.1 1.0 1 23 91 113 91 113 0.97
3 30 0.052 0.74 10.5 2.3 1 23 118 140 118 140 0.99
4 30 1.2e-05 0.00017 22.0 2.3 1 23 145 167 145 167 0.99
5 30 0.00013 0.0018 18.7 2.3 1 23 172 194 172 194 0.98
6 30 0.096 1.4 9.7 0.7 1 23 199 221 199 221 0.98
7 30 8.8e-05 0.0012 19.2 1.7 1 23 226 248 226 248 0.99
8 30 5.5e-05 0.00078 19.9 1.1 1 23 253 275 253 275 0.98
9 30 0.028 0.39 11.4 0.4 1 23 280 302 280 302 0.98
10 30 0.00015 0.0021 18.5 1.0 1 23 307 329 307 329 0.99
11 30 0.031 0.45 11.2 0.6 1 23 334 356 334 356 0.98
12 30 0.00019 0.0026 18.2 1.3 1 23 361 383 361 383 0.98
13 30 0.0062 0.088 13.4 1.6 1 23 388 410 388 410 0.98
14 30 0.16 2.2 9.0 1.8 1 23 418 440 418 440 0.98
15 30 0.00028 0.0039 17.7 2.8 1 23 445 467 445 467 0.98
16 30 7.3e-05 0.001 19.5 2.0 1 23 472 494 472 494 0.98
17 30 5.1e-05 0.00072 20.0 2.0 1 23 499 521 499 521 0.99
18 30 0.0089 0.13 12.9 0.9 1 23 526 548 526 548 0.99
19 30 0.16 2.3 9.0 1.1 1 23 553 575 553 575 0.98
20 30 0.35 5 7.9 5.0 1 23 580 602 580 602 0.98
21 30 0.014 0.2 12.3 1.9 1 23 607 629 607 629 0.99
22 30 0.03 0.43 11.3 0.5 1 23 634 656 634 656 0.98
23 30 0.063 0.89 10.3 2.0 1 23 661 683 661 683 0.98
24 30 1.7e-05 0.00025 21.5 1.7 1 23 715 737 715 737 0.99
25 30 0.015 0.22 12.2 1.2 1 23 742 764 742 764 0.99
26 30 0.78 11 6.8 1.8 1 23 769 791 769 791 0.97
27 30 0.033 0.47 11.1 4.1 1 23 796 818 796 818 0.99
28 30 0.023 0.33 11.6 1.0 1 23 823 845 823 845 0.99
29 30 2.4e-05 0.00035 21.0 1.3 1 23 850 872 850 872 0.99
30 30 0.036 0.51 11.0 1.3 1 23 877 899 877 899 0.98

Sequence Information

Coding Sequence
ATGGATGTAGATTctattgaaagttgtaaaataaaatcagaagtgattttaacagaaacgtttTCATTCTGTGAAAAATATCGAGATCATGATCGTGCAGAATTTAAAACAGGGTTTGTAAACGAGTCATTTGTATGTAAACTAGAAGATGATCTGGCAAACCACATGGATACAGATACAGGTGTTGAATATacatgtaatgaatgtgattataaaacagtgtggaaaagtaatctaaagcaacatgtcaaaattcacacaggtgataaatataactgtaaaagctgtgattataaaacaatatgggagcgtaatttaaagcaacatatcaaaattcatacaggtgatgaatataagtgtaataattgtgattataaaacaatatgggaacataatttaaaggaacatatcaaaagtcATACAGGtgatcaatataagtgtaaagaatgtgattttaaaactgtacggaaaagtaatctaaagcaacatattaaaattcatacgggtgacaaatataagtgtaaagattgtgattataaatcgGTGCGGAAAGATCaactaaagcaacatgtcaaaaatcATACAGGCgaaaaatataagtgtgaaaattgtgattataaaactatatggGAACGTAGTCTAAAgtcacatatcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattttaaaactgtgcgGAAAattaatctaaagcaacatattaaaattcatgcaggtgatgaatataaatgtaaagaatgtgattttaaaactgtacggaaGAGTAATCTAATACAACATGTCCAAATTCATGCAGGCGATCAAtttaagtgtgaagaatgtgattttaaaacagcatgGAGAGGTAGTCTAAAGAaccatatcaaaattcatacaggtgatgaatataggtgtaatgaatgtgaatttaaaactgtacggaaaagtgatctaatgcaacacatcaaaattcatacaggtcaccaatttaagtgtaaagaatgtgattttaaaacagcatggaaAGTTAGTCTAAAggtacatatcaaaattcatacaggtgatgaatataagtgtgatgaatgtgattttaaaactgtacggaGAAGTAATTTAATGCAACATGCCAAAAGTCATACAGGTGaccaatttaaatgtaaagaatgtaattttaaaactgtgtggaaaggtaatctaaagaaacatatcaaaattcatggAGGTGACGAATgtgacaaatataagtgtgaaaattgtgattataaaacaacatgggtacataatctaaaggaacatgtcaaaattcacacaggtgataaatataagtgtaaagaatgtgattttaaaactgtacggaaaagtaatctaatgcagcatttcaaaattcatacaggtgacaaatataaatgtaacgattGCAATTATGAAACAGTACGGAAAGATCAACTAAAGAAACATGTAAAAAATCATACAGGtaacgaatataagtgtaaaaactgtgattataaaactgtacgaaaaagtaatctaatgcaacatgtcaaaattcatacaggtgacaattataagtgtaaagaatgtgattttaaaacagcatggaaagctagtctaaagaaacatgtgagaattcatacaggtgataaatataagtgtaaaaactgTGATTATGAAACAATATGGGAACATAATCTAAAGggacatatcaaaattcatacaggtgatgaatataagtgtaaacactgtgattataaaacaatatgggaacataatctaaaggaacataccaaaattcatacagatgttgaatataagtgtaaagaatgtgattttaaaacaacatggaaatttaatctaaaggaacatgtgagaATCCATATaggtgataaatataattgtaaagaatgcgattttaaaactgtatggaaaagcaatctaatacaacatgtcaaaattcatacaggtgacaaatataagtgtgaaaattgtgattataaaacaacatgggAACAtaatttaaaggaacatgtcaagattcatacaggtgttgaatataaatgtaaaaactgtgattataaaacattatgggaacgtaatctaaaggaacatgtcaggATTCATAGAGgtcatgaatataagtgtaaagaatgtgattttaagactgtacggaaaagtaatctaatgcagcatatcaaaattcatacaggtgtcaagtataagtgtaaagaatgtaattttaaaacggcGTGGAAAGgtagtctaaagaaacatgtgagaattcatacaggtgataaatataagtgtaagaattGTGATTATGAAACAATATGGGAacataatctaaaggaacattccaaaattcatacaggtgatgaatataagtgtaaaaactgtgattataaaacaatatggaaacacaGTCTAaagaaacacatcaaaattcatacaggtgttgaatataagtgtaaagaatgtgattttaaaacaacgtGGAAAGttagtttaaaggaacatgtcaggattcatacaggtgatgaatataagtgtaaagaatgtgattttaagactgtacggaaaagtaatctagtgcagcatatcaaaattcatagaggtgacaagtataagtgtaaagaatgtaattttaaaacggcGTGGAAAGgtagtctaaagaaacatgtgaaaatccatacaggtgataaataa
Protein Sequence
MDVDSIESCKIKSEVILTETFSFCEKYRDHDRAEFKTGFVNESFVCKLEDDLANHMDTDTGVEYTCNECDYKTVWKSNLKQHVKIHTGDKYNCKSCDYKTIWERNLKQHIKIHTGDEYKCNNCDYKTIWEHNLKEHIKSHTGDQYKCKECDFKTVRKSNLKQHIKIHTGDKYKCKDCDYKSVRKDQLKQHVKNHTGEKYKCENCDYKTIWERSLKSHIKIHTGDEYKCKECDFKTVRKINLKQHIKIHAGDEYKCKECDFKTVRKSNLIQHVQIHAGDQFKCEECDFKTAWRGSLKNHIKIHTGDEYRCNECEFKTVRKSDLMQHIKIHTGHQFKCKECDFKTAWKVSLKVHIKIHTGDEYKCDECDFKTVRRSNLMQHAKSHTGDQFKCKECNFKTVWKGNLKKHIKIHGGDECDKYKCENCDYKTTWVHNLKEHVKIHTGDKYKCKECDFKTVRKSNLMQHFKIHTGDKYKCNDCNYETVRKDQLKKHVKNHTGNEYKCKNCDYKTVRKSNLMQHVKIHTGDNYKCKECDFKTAWKASLKKHVRIHTGDKYKCKNCDYETIWEHNLKGHIKIHTGDEYKCKHCDYKTIWEHNLKEHTKIHTDVEYKCKECDFKTTWKFNLKEHVRIHIGDKYNCKECDFKTVWKSNLIQHVKIHTGDKYKCENCDYKTTWEHNLKEHVKIHTGVEYKCKNCDYKTLWERNLKEHVRIHRGHEYKCKECDFKTVRKSNLMQHIKIHTGVKYKCKECNFKTAWKGSLKKHVRIHTGDKYKCKNCDYETIWEHNLKEHSKIHTGDEYKCKNCDYKTIWKHSLKKHIKIHTGVEYKCKECDFKTTWKVSLKEHVRIHTGDEYKCKECDFKTVRKSNLVQHIKIHRGDKYKCKECNFKTAWKGSLKKHVKIHTGDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-