Lyun014696.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002108.1:5162861-5165875[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.0013 0.018 15.6 3.9 1 23 150 172 150 172 0.97
2 30 0.041 0.57 10.9 0.8 1 23 177 199 177 199 0.98
3 30 2.7e-05 0.00038 20.9 1.0 1 23 204 226 204 226 0.99
4 30 0.0038 0.054 14.1 0.8 1 23 231 253 231 253 0.98
5 30 0.0095 0.13 12.8 0.9 1 23 258 280 258 280 0.98
6 30 0.039 0.56 10.9 4.2 1 23 285 307 285 307 0.98
7 30 0.036 0.52 11.0 1.0 1 23 312 334 312 334 0.98
8 30 3.7e-05 0.00053 20.4 1.5 1 23 339 361 339 361 0.99
9 30 0.00043 0.0061 17.1 3.6 1 23 366 388 366 388 0.99
10 30 4 56 4.6 0.5 1 23 393 415 393 415 0.96
11 30 0.00011 0.0015 19.0 0.9 1 23 420 442 420 442 0.99
12 30 0.036 0.51 11.0 1.3 1 23 447 469 447 469 0.99
13 30 0.077 1.1 10.0 3.8 1 23 474 496 474 496 0.96
14 30 2.3e-05 0.00032 21.1 1.4 1 23 501 523 501 523 0.99
15 30 0.16 2.2 9.0 1.0 1 23 528 550 528 550 0.98
16 30 0.031 0.43 11.2 2.9 1 23 555 577 555 577 0.99
17 30 0.00043 0.0061 17.1 3.1 1 23 582 604 582 604 0.99
18 30 0.00043 0.0061 17.1 3.1 1 23 609 631 609 631 0.99
19 30 3.9e-05 0.00055 20.4 1.2 1 23 636 658 636 658 0.99
20 30 0.41 5.8 7.7 3.9 1 23 663 685 663 685 0.98
21 30 0.0031 0.044 14.4 2.1 1 23 690 712 690 712 0.97
22 30 2.4e-05 0.00034 21.0 1.7 1 23 717 739 717 739 0.99
23 30 0.0066 0.094 13.3 1.7 1 23 751 773 751 773 0.99
24 30 0.043 0.61 10.8 1.1 1 23 778 800 778 800 0.98
25 30 3.7e-05 0.00053 20.4 1.5 1 23 805 827 805 827 0.99
26 30 0.043 0.61 10.8 1.1 1 23 832 854 832 854 0.98
27 30 0.00043 0.0061 17.1 3.1 1 23 859 881 859 881 0.99
28 30 2.3e-05 0.00032 21.1 1.4 1 23 886 908 886 908 0.99
29 30 0.043 0.61 10.8 1.1 1 23 913 935 913 935 0.98
30 30 0.018 0.26 12.0 2.0 1 23 940 962 940 962 0.98

Sequence Information

Coding Sequence
ATGGATATTAATTCTACTGAAAGTTGTTCAATAAAATCcgaaattattttaacagaaacattttgtgaaaaatacgAAGATTGTGGTAATGAAGAACTGAAAACTGAGCCAGTAGATTACAAAGAATTGTTTAAGTGTAATGAAGAAGATGATCCTGCAGAGCACATGGATACATCTGCTGCCCCGATACAACAATATTCTGGTAATGAACGTAACTTTACAAGAATGGAAAACGATTCCCTTCAGGGACATTTAAAAACTaccaaaaatattcaatatttttgtaagtactGTAACTTTAGAACTCATTTGGAATGTTTCataaaaaagcatttaaaaattcacaagGTAGTAGATGATACATATATTACTAAGGAATCTAATTGTAAGACGCCACAGGGTTTCTCCTTGGCACCACATATAGAAATGTCTAAATgtgataataaatacatttgtaatgaatgtaattttacgacaTCGAACAAAAATTGTCTAAGGAGACATATGACAATTCATATCGCTGACGAATATATGTGTAAagactgtgattataaaacagtatggaaatatagcctaaaggaacatgttaaaattcacacCAGtaaggaatataagtgtaaagaatgtgattataaaacagtgcgggaAAGTAGTCTGAAGGAACATATGAATATTCATaaaggtgaggaatataagtgtacagaatgtgattataaaacagtgtggaaaagtaatctaaaggaacacgtGAAAATTCATAATgatgaggaatataagtgtaaagaatgtgattataaaacagtttggaaaagtagtctaaaggaacatgtcaaaattcatacagatgaggaatataagtgtaaggaatgtgattataaaacaaggtggaaaaatcatctaaagcaacatgtcaaaattcacacaggtgaggaatacaagtgtaaagaatgtgattataaaacagtgtggaaatatCTGCTAaaggatcatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattacaaaacagtgcggaaaagtagtctaaaggtacatgtcaaaattcataaaggtgaggaatataagtgtaaagaatgtgattataaaacagttaggaaaaatcatctaaaggaacatgtcaaaattcacacaggtgaggaatataagtgcatagaatgtgattataaaacagtgtggaaatatTTGCTAaaggatcatgtcaaaattcacactggtgatgaatataagtgtaaagagtgtgattacaaaacagtgcgggaaagtagtctaaaggtacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtttggaaaaatctgctaaaggaacatgtcaaaactcatacaggtgagaaatataagtgtaaagaatgtgattataaagcaTTTCAGAAAcatcgtctaaaggaacatgtcaaaattcacactggtgaggaatataagtgtaaagaatgtgattataaaacagtgcagaaaagtagtctaaaggaacatatcaaaattcatactggtgaggaatataagtgtagagaatgtgattataaaacagtgtggaaatatATGCTGaaggatcatgtcaaaattcatacaggtgatgaatataagtgtcaagagtgtgattataaaacaaggtGGAAAAAGTATCTAAagcaacatctcaaaattcacacaggtgaggaatacaagtgtaaagaatgtgattataaaacggtgagGAAACATAGTCTGCaggaacacgtcaaaattcatacaggcgaggaatataagtgtaaagaatgtgattataaaacggtgagGAAACATAGTCTacaggaacatgtcaaaattcatacaggcgaggaatataagtgtaaagaatgtgattataaatcagtaCGGGAAAGTAGTCTgaaggaacatatgaaaattcataaaggtgtggaatataaatgtacagaatgtgatcacaaaacaatttggaaaaatcatctaaaggaacatgtcaaaattcacacaggtgaggaatataagtgtaaagaatgcgattataaaacatttcAGAAACGTGGTCTAAAGgatcatgttaaaattcatacaggcgatgaatataagtgtaaagaatgtgattataaaacagtgtcgaaatataatctaaaggaacatatcaaaattcacacaggcgaggaatataagtgtaaagatgaggaatataagtgtaaagaatgcgattataaaacagtgtggaaaaaacttctaaagaaacatatcaaaattcacacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaatatATGCTGaaggatcatgtcaaaattcacacaggtgaggaatataagtgtaaagagtgtgattacaaaacagtgcggaaaagtagtctaaaggtacatgtcaaaattcatacaggcgaggaatataagtgtaaagaatgcgattataaaacagtgtggaaatatATGCTGaaggatcatgtcaaaattcatacaggcgaggaatataagtgtaaagaatgtgattataaaacggtgagGAAACATAGTCTacaggaacatgtcaaaattcacacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgcagaaaagtagtctaaaggaacatatcaaaattcatacaggcgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaatatATGCTGaaggatcatgtcaaaattcatacaggcgatgaatataagtgtaaagaatgcgattataaaacagtgtggaaaaaactTCTAAAGAAACATATCCAAAATCATGCAAGTAAGgaatag
Protein Sequence
MDINSTESCSIKSEIILTETFCEKYEDCGNEELKTEPVDYKELFKCNEEDDPAEHMDTSAAPIQQYSGNERNFTRMENDSLQGHLKTTKNIQYFCKYCNFRTHLECFIKKHLKIHKVVDDTYITKESNCKTPQGFSLAPHIEMSKCDNKYICNECNFTTSNKNCLRRHMTIHIADEYMCKDCDYKTVWKYSLKEHVKIHTSKEYKCKECDYKTVRESSLKEHMNIHKGEEYKCTECDYKTVWKSNLKEHVKIHNDEEYKCKECDYKTVWKSSLKEHVKIHTDEEYKCKECDYKTRWKNHLKQHVKIHTGEEYKCKECDYKTVWKYLLKDHVKIHTGEEYKCKECDYKTVRKSSLKVHVKIHKGEEYKCKECDYKTVRKNHLKEHVKIHTGEEYKCIECDYKTVWKYLLKDHVKIHTGDEYKCKECDYKTVRESSLKVHVKIHTGEEYKCKECDYKTVWKNLLKEHVKTHTGEKYKCKECDYKAFQKHRLKEHVKIHTGEEYKCKECDYKTVQKSSLKEHIKIHTGEEYKCRECDYKTVWKYMLKDHVKIHTGDEYKCQECDYKTRWKKYLKQHLKIHTGEEYKCKECDYKTVRKHSLQEHVKIHTGEEYKCKECDYKTVRKHSLQEHVKIHTGEEYKCKECDYKSVRESSLKEHMKIHKGVEYKCTECDHKTIWKNHLKEHVKIHTGEEYKCKECDYKTFQKRGLKDHVKIHTGDEYKCKECDYKTVSKYNLKEHIKIHTGEEYKCKDEEYKCKECDYKTVWKKLLKKHIKIHTGEEYKCKECDYKTVWKYMLKDHVKIHTGEEYKCKECDYKTVRKSSLKVHVKIHTGEEYKCKECDYKTVWKYMLKDHVKIHTGEEYKCKECDYKTVRKHSLQEHVKIHTGEEYKCKECDYKTVQKSSLKEHIKIHTGEEYKCKECDYKTVWKYMLKDHVKIHTGDEYKCKECDYKTVWKKLLKKHIQNHASKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-