Lyun007274.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:8562969-8565759[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.13 1.8 9.3 0.1 2 21 67 86 66 87 0.93
2 28 0.61 8.7 7.1 1.1 1 23 119 141 119 141 0.97
3 28 0.00076 0.011 16.3 1.3 1 23 146 168 146 168 0.99
4 28 0.0053 0.074 13.6 1.1 1 23 173 195 173 195 0.98
5 28 0.0018 0.026 15.1 1.2 1 23 200 222 200 222 0.98
6 28 9.9e-05 0.0014 19.1 3.0 1 23 227 249 227 249 0.99
7 28 0.00037 0.0053 17.3 2.0 1 23 254 276 254 276 0.99
8 28 0.006 0.085 13.5 0.9 1 23 286 308 286 308 0.99
9 28 0.066 0.94 10.2 0.4 1 23 313 335 313 335 0.98
10 28 0.059 0.84 10.3 1.3 1 23 340 362 340 362 0.98
11 28 0.0072 0.1 13.2 1.7 1 23 367 389 367 389 0.99
12 28 0.039 0.56 10.9 0.9 1 23 394 416 394 416 0.98
13 28 0.0014 0.019 15.5 1.3 1 23 421 443 421 443 0.98
14 28 0.00014 0.0019 18.6 3.3 1 23 448 470 448 470 0.99
15 28 0.006 0.085 13.5 0.9 1 23 480 502 480 502 0.99
16 28 0.078 1.1 10.0 0.3 1 23 507 529 507 529 0.98
17 28 0.059 0.84 10.3 1.3 1 23 534 556 534 556 0.98
18 28 0.0072 0.1 13.2 1.7 1 23 561 583 561 583 0.99
19 28 0.039 0.56 10.9 0.9 1 23 588 610 588 610 0.98
20 28 0.0014 0.019 15.5 1.3 1 23 615 637 615 637 0.98
21 28 4.3e-05 0.0006 20.2 3.3 1 23 642 664 642 664 0.99
22 28 0.00073 0.01 16.3 1.2 1 23 669 691 669 691 0.98
23 28 2.3e-05 0.00033 21.1 1.8 1 23 696 718 696 718 0.99
24 28 0.00073 0.01 16.3 1.2 1 23 723 745 723 745 0.98
25 28 7.5e-05 0.0011 19.5 1.7 1 23 750 772 750 772 0.99
26 28 6.7e-05 0.00094 19.6 1.5 1 23 777 799 777 799 0.99
27 28 0.00013 0.0018 18.7 2.0 1 23 804 826 804 826 0.99
28 28 0.0032 0.045 14.3 2.7 1 23 831 853 831 853 0.99

Sequence Information

Coding Sequence
atggATGTTGGTACTATTGAAAGTTGTGCgataaaatctgaagtgattttaacgGAAACATTTTGTGGACAACGTGGAGGCAATGGGGATAAACAACCAAAAACAGAGCCAGTAGATTacgaagaatcttttaaatgtaaggaGGAAGATATTTCTGTAGAGCAGATGGGCATGCATTCTGTTCCGATGGAACAATTATCTTGTAATGAGTGTGACTTTATGACAATGCAAAAAGATTCTCTAATCGATCACAAAcgtgtagataataaatatattattgcaGAAAGTAATTTTCAGACAACACAGAATTTCTGTTTAACACCGCAGTGGGAAACTTTGAAAAGTGATGACATATATATTTGTAGTCaatgtaattataccacattAATCAAGAACTCTCTAAGaagacatgtaaaaattcataaagacgctgaatataagtgtacagaatgtgattataaaacagtgcgaaaagatcgcctaaaggaacatgtcaaaatccatACAGGTAACAAGTAtgagtgtaaggaatgtgactacaaaacagtgCAAAAACGATCtataaagcaacatgtcaaaattcatacaggtgataaatatatgtgtcaagaatgtgactacaaaacggTACGAAAAGATAGACTaaagcaacatgtaaaaattcatacaggtgatgaatataagtgtacagaatgtgactataaaacggtgcgaaaagatcatctaacgcaacatgtaaaaattcatactggtgatgaatataagtgtaaagaatgtaactataaaacagtgcaaaaatatcttctaaatcaacatgtaaaaattcatacaggtgatgaatataagtgtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaatatagtctaaaggaacacatcaaaattcatacaggtgatgaatatatgtgtaaagaatgtgattatagaacagTGTGGCAAACTGCTCTAAAgcagcatgtcaaaattcatacagatgacaaatatgagtgtaaagaatgtgattataaaacagtgtggcaacatagtctaaaggaacacgtcaaaatacatgtaggtgatgaatataagtgtaaagaatgtgcctataaaacagtgcgaaaagatagactaaagcaacatgtaaaaattcatgcaggtgatgaatataagtgtaaagaatgtgattttaagacAGCATGGAAAGATACTTTAacgcaacatgtaaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacggtgcgaAAAGATAGACTAATGCaacatgcaaaaattcatacaggtgatgaatataagtgtcaagaatgtgactataaaacggtgcgaaaagatcatctaaagcaacatgtaaaaattcatactggtgatgaatataagtgtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaatatagtctaaaggaacacatcaaaattcatacaggtgatgaatatatatgtaaagaatgtgattatagaacagTGTGGCAAACTGCTCTAAAGCagcatgtaaaaattcatacagatgacaaatatgagtgtaaagaatgtgattataaaacagtgtggcaacatagtctaaaggaacacgtcaaaatacatgtaggtgatgaatataagtgtaaagaatgtgcctataaaacagtgcgaaaagatagactaaagcaacatgtaaaaattcatgcaggtgatgaatataagtgtaaagaatgtgattttaagacAGCATGGAAAGATACTTTAacgcaacatgtaaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacggtgcgaAAAGATAGACTAATGCaacatgcaaaaattcatacaggtgatgaatataagtgtcaagaatgtgactataaaacggtgcgaaaagatcatctaaagcaacatataaaaattcatactggtgatgaatataaatgtaaagaatgtgactataaaacggtgCGAAAGGATagactaaaggaacatgtaaatattcatacaggtgatgaatataagtgtaaagaatgcgactataaaacaatacgaaaagatagtctaaagcaacatataaaaattcatactggtgatgaatataagtgtaaagaatgtgactataaaacggtgCGAAAGGATagactaaaggaacatgtaaatattcatacaggtgatgaatataagtgtaaagaatgcgactataaaacaatacgaaaagatagtctaaagcaacatgtaaaaattcatacaggtgatgaatataagtgtacagaatgtgactataaaacagtacgaaaagatagtctaaagcaacatgtaaaaattcatacagctgatgaatataagtgtaaagaatgtaattataaaacagtgcggcaacgtagtctaaaggaacacatcaaaattcatacaggtgaagaatataaatgtaaagaatgtgactataaaacagtgcaaaaacgATATAtgaagcaacatgtcaaaattcatagcAACAAGAATGCAGCCATGCTTTGCAGTAAACAACCAACACTATAA
Protein Sequence
MDVGTIESCAIKSEVILTETFCGQRGGNGDKQPKTEPVDYEESFKCKEEDISVEQMGMHSVPMEQLSCNECDFMTMQKDSLIDHKRVDNKYIIAESNFQTTQNFCLTPQWETLKSDDIYICSQCNYTTLIKNSLRRHVKIHKDAEYKCTECDYKTVRKDRLKEHVKIHTGNKYECKECDYKTVQKRSIKQHVKIHTGDKYMCQECDYKTVRKDRLKQHVKIHTGDEYKCTECDYKTVRKDHLTQHVKIHTGDEYKCKECNYKTVQKYLLNQHVKIHTGDEYKCDEYKCKECDYKTVWQYSLKEHIKIHTGDEYMCKECDYRTVWQTALKQHVKIHTDDKYECKECDYKTVWQHSLKEHVKIHVGDEYKCKECAYKTVRKDRLKQHVKIHAGDEYKCKECDFKTAWKDTLTQHVKIHTGDEYKCKECDYKTVRKDRLMQHAKIHTGDEYKCQECDYKTVRKDHLKQHVKIHTGDEYKCDEYKCKECDYKTVWQYSLKEHIKIHTGDEYICKECDYRTVWQTALKQHVKIHTDDKYECKECDYKTVWQHSLKEHVKIHVGDEYKCKECAYKTVRKDRLKQHVKIHAGDEYKCKECDFKTAWKDTLTQHVKIHTGDEYKCKECDYKTVRKDRLMQHAKIHTGDEYKCQECDYKTVRKDHLKQHIKIHTGDEYKCKECDYKTVRKDRLKEHVNIHTGDEYKCKECDYKTIRKDSLKQHIKIHTGDEYKCKECDYKTVRKDRLKEHVNIHTGDEYKCKECDYKTIRKDSLKQHVKIHTGDEYKCTECDYKTVRKDSLKQHVKIHTADEYKCKECNYKTVRQRSLKEHIKIHTGEEYKCKECDYKTVQKRYMKQHVKIHSNKNAAMLCSKQPTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-