Lyun003769.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000591.1:603865-606608[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 4.6 65 4.4 1.0 1 21 94 114 94 115 0.90
2 25 0.00056 0.0079 16.7 0.4 1 23 171 193 171 193 0.99
3 25 0.2 2.9 8.7 2.0 1 23 198 220 198 220 0.98
4 25 4.4e-05 0.00063 20.2 1.8 1 23 225 247 225 247 0.98
5 25 0.00075 0.011 16.3 3.3 1 23 252 274 252 274 0.98
6 25 0.00033 0.0047 17.4 3.4 1 23 279 301 279 301 0.99
7 25 8.9e-05 0.0013 19.2 4.1 1 23 306 328 306 328 0.99
8 25 0.00058 0.0082 16.7 3.6 1 23 341 363 341 363 0.99
9 25 0.0014 0.02 15.4 0.7 1 23 368 390 368 390 0.98
10 25 1.6e-05 0.00023 21.6 1.1 1 23 395 417 395 417 0.98
11 25 0.025 0.36 11.5 2.4 1 23 432 454 432 454 0.99
12 25 7.2e-05 0.001 19.5 2.2 1 23 459 481 459 481 0.99
13 25 3.2e-05 0.00045 20.6 1.3 1 23 486 508 486 508 0.99
14 25 8.9e-05 0.0013 19.2 4.1 1 23 513 535 513 535 0.99
15 25 0.037 0.52 11.0 2.1 1 23 540 562 540 562 0.99
16 25 0.00012 0.0017 18.8 3.8 1 23 567 589 567 589 0.99
17 25 0.015 0.21 12.2 1.8 1 23 594 616 594 616 0.98
18 25 6.9e-05 0.00097 19.6 1.4 1 23 621 643 621 643 0.98
19 25 0.00026 0.0037 17.7 1.1 1 23 648 670 648 670 0.98
20 25 3e-05 0.00043 20.7 1.7 1 23 675 697 675 697 0.98
21 25 1.1e-05 0.00016 22.0 0.4 1 23 702 724 702 724 0.98
22 25 0.038 0.54 10.9 1.7 1 23 729 751 729 751 0.99
23 25 0.00058 0.0082 16.7 3.6 1 23 756 778 756 778 0.99
24 25 0.0014 0.02 15.4 0.7 1 23 783 805 783 805 0.98
25 25 1.6e-05 0.00023 21.6 1.1 1 23 810 832 810 832 0.98

Sequence Information

Coding Sequence
ATGATGGATGTTCATATTGATGAAAGTTGTTCCATTAAATCTGAAGTGGTTATCGGGGAAACGTTTTCCTTTTGTGGAAAATACGAAGattATGGAAATGATGAATTGAAAGTGGAGCCTGCAAGTTatgaagaattatttaaatataaggaAGAAGAAGAGCATCGAAAACACATGGATACATATACTGCTACCTTACAACAAAGTACTGAATATAACTTTGAGTCAACGAAGAACGATTTTTTGATAGAACATTTGAAAGCAcctaaaaatattcaatatttttgtaaagaatgtaactttAAATCTCCATTGAAATATTCTAATAAAGAGCATTTGAGGGTTTACAACAAACTATGTAATagatgtaaagaatgtaatttaaattcagCAATACCACAGTTCAAAACTGCAGAAAATGGTGAAGACAATAGTTGTAAGGAAAGTAAATATAACGAAGGATGCAAACCTTATtcagaaaaatatgaaaaaaatgatacagaTAAACAATTCAAGTGTAATGAGTGTGATTACGAAACACGATGGAAAGGTAATCTAACGGCgcacatgaaaattcatatgggtattgaatataaatgtaaggaatgcaAGTATAAAACAGGGTGGGAAAGTTGTTTAAAGGCTCATATGTTAATTCATATGGGTTATAAATATGAATGTAACGAATGTCAGTATAAAACGGTGcgaaaatatgatttaaaaactcatatgaaaattcatatgggtgatgaatataaatgtcaGCAATGTGAGTATAAATCAGTGAGGaaatatgatttaaaaactCATATGAAAaatcatacaggtgacaaatataaatgtaaagaatgtgagtataaaacGGTGCGCAAATGTGAACTAAAAgctcatatgaaaattcacacgtgtgatgagtataaatgtaaggaatgtgagtataaaacagtgcgaaaatatCATCTAAGAgttcatatgaaaattcataaggGTGAAGAATACAAATGTCAggaatgtgatgaatataaatgtcaGGTGTGTGAGtacaaaacagtgcggaaatatGATCTAAAAGCTCATATGCATAAACATATGGGAGGCAAATATGAATGTAAAGATTGTGggtataaaacagtgtggaaaaataatttaaaaactcatattaaaattcatatggataagaaatttgaatgtaaagaatgtggctataaaacagtgcgaaaatatgatttaaaaactCATATCAAAGTCCATATGGGTGGCgaAgttcatatgaaaattcatatgagtgatgagtataaatgtaaggaatgtgagtataaaacagtatggaaatataaactaaaaactcatatgaaaattcatatgggtgatgaatataaatgtcaggaatgtgagtataaaacagtgcgaaaatatgatttaaaaactcatatgaaaattcatatgtgtgatgaatataaatgtcaggaatgtgagtataaaacagtgcggaaatatGATCTAAAAgctcatatgaaaattcacacgtgtgatgagtataaatgtaaggaatgtgagtataaaacagtgcgaaaatatCATCTAAGAgttcatatgaaaattcataagggtgaagaatataaatgtcaggaatgtgagtataaaacagtatggaaatataaactaaaaactcatatgaaaattcatatgaGTGATGAGTATAAATGTCAGGAATGTGAGTacaaaacagtacaaaaacataATCTAAAAGCTCATATGCAAAAACATATGGGAGGCAAATATGAATGTAGAGAATGTGGGCATAAAACGGTGTGGAAATATGATTTAAAAacgcatatgaaaattcacatgGGTGACAAATATGTATGTAAGGAATGCgagtataaaacagtgcggaaatatGATCTAAAAGTTCATATGCAAAAACATATTGGAGGCAAATATGAATGTCAAGAATGTGGGCACAAAACGGTGTTGAAATATGATCTAAAAgctcatatgaaaattcacacggGTGACAAATATGAATGTAAGAAATGCGACTACAAAACAGTGAGAAAGTATGATTTAGAAactcatatgaaaattcataaggGTGACGAGTATGAGTGTAATGAATGTGGGTATAAAACTGTGCAGAAATATGGTTTAAAAgctcatatgaaaattcatacgggtgacGAATACAAATGTCAggaatgtgagtataaaacagtatggaaatataaactaaacactcatatgaaaattcatataggtgatgaatataaatgtcaGGTGTGTGAGTACAAAACAGTGCGTAAATATGATCTAAAAGCTCATATGCATAAACATATGGGAGGCAAATATGAATGTAAAGATTGTGggtataaaacagtgtggaaaaataatttaaaaactcatattaaaattcatatggataagaaatttgaatgtaaagaatgtggctataaaacagtgcgaaaatatgatttaaaaactCATATCAAAGTCCATATGGGTGGCgagtataagtgtaacgaatatGAGTATAAAACTGTGGAAATTTCATCTAAGAGTTCATATTTAAATTCATATgtgtga
Protein Sequence
MMDVHIDESCSIKSEVVIGETFSFCGKYEDYGNDELKVEPASYEELFKYKEEEEHRKHMDTYTATLQQSTEYNFESTKNDFLIEHLKAPKNIQYFCKECNFKSPLKYSNKEHLRVYNKLCNRCKECNLNSAIPQFKTAENGEDNSCKESKYNEGCKPYSEKYEKNDTDKQFKCNECDYETRWKGNLTAHMKIHMGIEYKCKECKYKTGWESCLKAHMLIHMGYKYECNECQYKTVRKYDLKTHMKIHMGDEYKCQQCEYKSVRKYDLKTHMKNHTGDKYKCKECEYKTVRKCELKAHMKIHTCDEYKCKECEYKTVRKYHLRVHMKIHKGEEYKCQECDEYKCQVCEYKTVRKYDLKAHMHKHMGGKYECKDCGYKTVWKNNLKTHIKIHMDKKFECKECGYKTVRKYDLKTHIKVHMGGEVHMKIHMSDEYKCKECEYKTVWKYKLKTHMKIHMGDEYKCQECEYKTVRKYDLKTHMKIHMCDEYKCQECEYKTVRKYDLKAHMKIHTCDEYKCKECEYKTVRKYHLRVHMKIHKGEEYKCQECEYKTVWKYKLKTHMKIHMSDEYKCQECEYKTVQKHNLKAHMQKHMGGKYECRECGHKTVWKYDLKTHMKIHMGDKYVCKECEYKTVRKYDLKVHMQKHIGGKYECQECGHKTVLKYDLKAHMKIHTGDKYECKKCDYKTVRKYDLETHMKIHKGDEYECNECGYKTVQKYGLKAHMKIHTGDEYKCQECEYKTVWKYKLNTHMKIHIGDEYKCQVCEYKTVRKYDLKAHMHKHMGGKYECKDCGYKTVWKNNLKTHIKIHMDKKFECKECGYKTVRKYDLKTHIKVHMGGEYKCNEYEYKTVEISSKSSYLNSYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-