Lyun000870.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000125.1:287077-294637[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 37 0.21 2.9 8.6 0.1 1 21 68 88 68 89 0.93
2 37 0.0047 0.066 13.8 1.0 1 23 151 173 151 173 0.99
3 37 0.0072 0.1 13.2 1.4 1 23 178 200 178 200 0.99
4 37 0.00064 0.0091 16.5 3.5 1 23 205 227 205 227 0.99
5 37 0.019 0.27 11.9 0.9 1 23 232 254 232 254 0.99
6 37 0.00019 0.0027 18.2 0.7 1 23 259 281 259 281 0.97
7 37 1.4 19 6.1 3.7 1 21 286 306 286 308 0.95
8 37 0.036 0.51 11.0 0.7 1 23 313 335 313 335 0.98
9 37 5.1e-06 7.2e-05 23.1 1.2 1 23 340 362 340 362 0.99
10 37 0.5 7 7.4 0.2 1 23 367 389 367 389 0.97
11 37 0.0057 0.08 13.5 2.2 1 23 394 416 394 416 0.97
12 37 0.066 0.93 10.2 0.6 1 23 421 443 421 443 0.98
13 37 0.031 0.44 11.2 1.2 1 23 448 470 448 470 0.97
14 37 0.072 1 10.1 0.5 1 23 475 497 475 497 0.98
15 37 5.5e-05 0.00077 19.9 1.1 1 23 502 524 502 524 0.98
16 37 0.012 0.17 12.5 0.7 1 23 541 563 541 563 0.99
17 37 0.032 0.46 11.2 0.4 1 23 568 590 568 590 0.98
18 37 0.043 0.61 10.8 1.2 1 23 595 617 595 617 0.98
19 37 0.031 0.44 11.2 1.2 1 23 622 644 622 644 0.97
20 37 0.057 0.81 10.4 0.2 1 23 649 671 649 671 0.98
21 37 5.5e-05 0.00077 19.9 1.1 1 23 676 698 676 698 0.98
22 37 0.18 2.6 8.8 0.7 1 21 756 776 756 777 0.95
23 37 0.031 0.44 11.2 2.5 1 23 783 805 783 805 0.98
24 37 0.00011 0.0016 18.9 2.6 1 23 810 832 810 832 0.99
25 37 0.18 2.6 8.8 0.3 1 23 837 859 837 859 0.98
26 37 0.0034 0.048 14.2 2.5 1 23 863 885 863 885 0.98
27 37 0.029 0.42 11.3 3.7 1 23 890 912 890 912 0.97
28 37 0.02 0.28 11.8 1.7 1 23 917 939 917 939 0.99
29 37 0.0068 0.097 13.3 4.2 1 23 944 966 944 966 0.98
30 37 0.0011 0.015 15.8 1.4 1 23 998 1020 998 1020 0.99
31 37 0.0034 0.048 14.2 3.0 1 23 1025 1047 1025 1047 0.98
32 37 4.6e-05 0.00065 20.1 2.7 1 23 1052 1074 1052 1074 0.99
33 37 0.16 2.2 9.0 0.6 1 23 1079 1101 1079 1101 0.98
34 37 0.0001 0.0014 19.0 1.4 1 23 1105 1127 1105 1127 0.98
35 37 0.42 5.9 7.7 5.9 1 23 1132 1154 1132 1154 0.98
36 37 0.024 0.34 11.6 2.6 1 23 1159 1181 1159 1181 0.99
37 37 0.14 2 9.1 2.2 1 23 1186 1208 1186 1208 0.98

Sequence Information

Coding Sequence
atggatgttgattataatgaaagttatccaataaaaacagaaataattgtAAAGGAAACATTTTCACATTGTGGAAATTATGAAGATCGTGagattaaagaattaaaaacggACCCCATAGATTTAGATGAATCTTTTATATGCAAAGAAGAGGATAATCTTGTGGAGCTCACTGATGTAGATGCTGTACCTGTAAATcgatatatttgtaatgaatgtaattttattacaacagtgaaagattctttaatacaacactttaacattattaaaaatgtGTCCAGAATATTCTCTTTAGCGCCatatgattataaaacaccacaGAAATGGAGTCtaaatgaacatttaaaaatccatactggtgatgaatataagtttagcaattgtgattataaaacagtacagaaacACAATCTAAAGGAAcaaatgaaaattcatacagatgatggatataagtgcaaagaatgtgattataaaacaatatggaaacagaatctaaaagTACATTtaagaatccatactggtgataaatataagtgtaaggaatgtgattataaaacatcatggaaacagagtctaaaggcacatttaaaaatccatactggtgatgaatataagtgtaccatttgtgattataaaacaccacggAAATGTTATCTTAAAGAACATATGAATATTCATAGTGGTGACAGatataagtgcaaggaatgcgattataaaacaatatggaaacggAGTCTAAATGCACATTtgaaaatccatactggtgatgaatataagtgtagcgattgtgattataaaacagtgcggaaagccaatctaaaagaacatgtgacaattcatactggtgacagatataagtgcaaggaatgcgattataaaacaatatggaaacagaatctaaaagtacatttaaaatgccatactggtgataaatataagtgtaaggaatgtgattataaaacaatatggagaCAGAGTCTaaatgcacatttaaaaattcataccggtgatgaatataagtgtaacgattgtgattataaaacagtgcagaaaGACAATCTAAAGgagcatatgaaaattcatactggtggtGGATATGAGTGCacggaatgtgattttaaaacaatatggaaaggGAGTTTAAATGCACATtcaaaaatccatactggtgatgaatataactgtaatgattgtgattataaaacatttcaGAAATACAGGCTAAAGGaacacataaaaattcatactggtgacagaTATGTGTGCaaggaatgcgattataaaacaatatggaaacgaAATCTAAAGggacatttaaaaatccatactggtgataaatataagtgtaatgattgtgattataaagcaTTGCGGAAGGACACTCTAAAAGAACATacgaaaattcatactggtgagaGATACGAGTGCaagaaatgtgattttaaaacaatatggaaaggCAGTCTaaatgcacatttaaaaatccattctggtgataaatataactgtaatgattgtgattataaaacagtgcggaaagacACTCTAAAAgagcatatgaaaattcatattggtGACAAATGTGAGTgtatgaaaataatccatactggtgatgaatataagtgtaatgattgtgattataaaacaatatggaaacggAGTCTaaatgcacatttaaaaatccatactggtgatgaatataagtgtaaggaatgtgattttaaaacaatatggaaaggCAGTCTaaatgcacatttaaaaatccatactggtgataaatataagtgtaaggaatgcgattataaaacaatatggaaacgaAATCTAAAGggacatttaaaaatccatactggtgataaatataagtgtaatgattgtgattataaagcaTTGCGGAAGGACACTCTAAAAGAACATacgaaaattcatactggtgagaGATACgagtgcaaggaatgtgattttaaaacaatatggaaaggCAGTCTaaatgcacatttaaaaatccattctggtgataaatataactgtaatgattgtgattataaaacagtgcggaaagacACTCTAAAAgagcatatgaaaattcatattggtGACAAATtgtaTACAATGAATGTTgattataatgaaagttatcctATAAACTCAGAAATAATTGTAAAGGAAACATTTTCATATTGTGAAAATTATGAAGATTATAggaataaagaattgaaaacggACCTTGTGGAGGCTGCCAATGTACGtgctggtgatgaatataattgtaacgattgtgattataaaacaatgtggAAACAGTCTCTAAAGAGACATATGAAAATTAATACTTggaatgaatataaatgtatgaAATGTGCCTATAAGACATCACAGAAACAGTATCTAAAAAACCATTTGATAATGCATAGTAATCATAAATATAAGTGtgaggaatgtgattttaaaacatcacGAAAGTACAGTttaaagcaacatttaaaaattcatactggcgacgaatataagtgtatggtatgtgattataaaacaccatggaaacaaacATTAAAGGCACATATGGATATTCATACAGATGggtataagtgtaaggaatgtgatcaTAGAACTGTAACGAAACTGAGTCTAACGGCACATTTAAAactccatactggtgatgagtataaCTGTAACGTTTGTGATTATACAACAGTACACAAACACGGACTAAAAGAACACTTCAACATTCACAcaagtgatgaatataaatgtgaggagtgtgattataaaacacgttggaaacagagtctaaagacacatttaaaaatccatactggtgatgaatataactgtaacaattgtgattttaaaacggtGCGGAAACagtgtctaaaggaacatatgagaattcacACTGGTGAGACATATAAttgcaaggaatgtgattttaaaacacattGGAAACAGAACCtgaaaacacattttaaattgcataccggtaatgaatataagtgtaacaattgtgattataaaacaatacagaaATATGTATTAAAGGAACATATGCAAATTCATAATGGTGATGAATTTAAATGTAtgaaatgtgactataaaacatcaCAGAAACAGTATCTAAAGAACCATTTGATAATGCATAGTGATCATAAATATAAGTGcgaggaatgtgattataaaacaacacgAAAATAcagtctaaagcaacatttaaaaatacatactggtgacgaatataagtgtatgatatgtgattataaaacaccatggaaacaaacattaaaaacacATATGGATATTCATAcagatgaatataagtgtaaggaatgtggttataaaactATAACACAACGGagtctaaaggcacatttaaAACTCCATAGTGGcgatgaatttaagtgtaacatttgtgattataaaacagggCATAAACACAGACTAAAAGAACACTTCAACATTCATAcaagtgatgaatataaatgtaaggagtgtgattataaaacacgttggaaacagagtctaaagacacatttaaaaattcatactggtgatgaatataactgtaacaattgtgattataaaacacgttggaaacagagtctaaagacacatttaaaaattcatactggtgatgaatataagtgcaagaAATGTGATTATTAA
Protein Sequence
MDVDYNESYPIKTEIIVKETFSHCGNYEDREIKELKTDPIDLDESFICKEEDNLVELTDVDAVPVNRYICNECNFITTVKDSLIQHFNIIKNVSRIFSLAPYDYKTPQKWSLNEHLKIHTGDEYKFSNCDYKTVQKHNLKEQMKIHTDDGYKCKECDYKTIWKQNLKVHLRIHTGDKYKCKECDYKTSWKQSLKAHLKIHTGDEYKCTICDYKTPRKCYLKEHMNIHSGDRYKCKECDYKTIWKRSLNAHLKIHTGDEYKCSDCDYKTVRKANLKEHVTIHTGDRYKCKECDYKTIWKQNLKVHLKCHTGDKYKCKECDYKTIWRQSLNAHLKIHTGDEYKCNDCDYKTVQKDNLKEHMKIHTGGGYECTECDFKTIWKGSLNAHSKIHTGDEYNCNDCDYKTFQKYRLKEHIKIHTGDRYVCKECDYKTIWKRNLKGHLKIHTGDKYKCNDCDYKALRKDTLKEHTKIHTGERYECKKCDFKTIWKGSLNAHLKIHSGDKYNCNDCDYKTVRKDTLKEHMKIHIGDKCECMKIIHTGDEYKCNDCDYKTIWKRSLNAHLKIHTGDEYKCKECDFKTIWKGSLNAHLKIHTGDKYKCKECDYKTIWKRNLKGHLKIHTGDKYKCNDCDYKALRKDTLKEHTKIHTGERYECKECDFKTIWKGSLNAHLKIHSGDKYNCNDCDYKTVRKDTLKEHMKIHIGDKLYTMNVDYNESYPINSEIIVKETFSYCENYEDYRNKELKTDLVEAANVRAGDEYNCNDCDYKTMWKQSLKRHMKINTWNEYKCMKCAYKTSQKQYLKNHLIMHSNHKYKCEECDFKTSRKYSLKQHLKIHTGDEYKCMVCDYKTPWKQTLKAHMDIHTDGYKCKECDHRTVTKLSLTAHLKLHTGDEYNCNVCDYTTVHKHGLKEHFNIHTSDEYKCEECDYKTRWKQSLKTHLKIHTGDEYNCNNCDFKTVRKQCLKEHMRIHTGETYNCKECDFKTHWKQNLKTHFKLHTGNEYKCNNCDYKTIQKYVLKEHMQIHNGDEFKCMKCDYKTSQKQYLKNHLIMHSDHKYKCEECDYKTTRKYSLKQHLKIHTGDEYKCMICDYKTPWKQTLKTHMDIHTDEYKCKECGYKTITQRSLKAHLKLHSGDEFKCNICDYKTGHKHRLKEHFNIHTSDEYKCKECDYKTRWKQSLKTHLKIHTGDEYNCNNCDYKTRWKQSLKTHLKIHTGDEYKCKKCDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-