Lyun009686.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001778.1:6681575-6691126[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 0.0079 0.11 13.1 1.0 1 23 163 185 163 185 0.99
2 36 0.34 4.8 8.0 1.4 1 23 190 212 190 212 0.96
3 36 0.012 0.17 12.5 1.1 1 23 217 239 217 239 0.99
4 36 0.29 4.1 8.2 0.7 1 23 244 266 244 266 0.98
5 36 1e-05 0.00015 22.1 1.1 1 23 271 293 271 293 0.99
6 36 0.12 1.8 9.3 5.7 1 23 298 320 298 320 0.99
7 36 0.0033 0.047 14.3 1.7 1 23 325 347 325 347 0.99
8 36 0.005 0.071 13.7 1.7 1 23 352 374 352 374 0.99
9 36 0.091 1.3 9.8 1.0 1 23 379 401 379 401 0.98
10 36 0.00055 0.0077 16.7 2.6 1 23 406 428 406 428 0.99
11 36 0.072 1 10.1 1.0 1 23 453 475 453 475 0.98
12 36 2e-05 0.00028 21.3 1.7 1 23 480 502 480 502 0.99
13 36 0.082 1.2 9.9 3.4 1 23 507 529 507 529 0.98
14 36 0.0014 0.02 15.5 1.2 1 23 534 556 534 556 0.99
15 36 0.00028 0.0039 17.7 2.1 1 23 561 583 561 583 0.99
16 36 0.006 0.085 13.5 1.2 1 23 588 610 588 610 0.99
17 36 3.1 44 4.9 2.6 1 23 615 637 615 637 0.95
18 36 0.00042 0.006 17.1 2.1 1 23 642 664 642 664 0.99
19 36 0.005 0.071 13.7 1.7 1 23 689 711 689 711 0.99
20 36 0.091 1.3 9.8 1.0 1 23 716 738 716 738 0.98
21 36 0.00055 0.0077 16.7 2.6 1 23 743 765 743 765 0.99
22 36 0.0011 0.016 15.7 1.1 1 23 770 792 770 792 0.99
23 36 0.072 1 10.1 1.0 1 23 797 819 797 819 0.98
24 36 2e-05 0.00028 21.3 1.7 1 23 824 846 824 846 0.99
25 36 0.082 1.2 9.9 3.4 1 23 851 873 851 873 0.98
26 36 0.0028 0.039 14.5 0.9 1 23 878 900 878 900 0.99
27 36 0.00028 0.0039 17.7 2.1 1 23 905 927 905 927 0.99
28 36 0.006 0.085 13.5 1.2 1 23 932 954 932 954 0.99
29 36 3.1 44 4.9 2.6 1 23 959 981 959 981 0.95
30 36 0.0027 0.038 14.6 2.0 1 23 986 1008 986 1008 0.99
31 36 0.25 3.6 8.3 1.5 1 23 1013 1035 1013 1035 0.96
32 36 0.00091 0.013 16.0 1.8 1 23 1040 1062 1040 1062 0.99
33 36 0.005 0.071 13.7 1.7 1 23 1067 1089 1067 1089 0.99
34 36 0.058 0.81 10.4 1.0 1 23 1094 1116 1094 1116 0.98
35 36 2e-05 0.00028 21.3 1.7 1 23 1121 1143 1121 1143 0.99
36 36 0.0005 0.007 16.9 2.4 1 23 1148 1170 1148 1170 0.99

Sequence Information

Coding Sequence
ATGGACGTCTATTATAATGAAAGCTATCCGATAAAAACGGAAGTAATTGTAAAGCAAACGTTCTCATTTTgtggaaaatatgaagATTCTGTGAATGAAGAGTTGAAAATGGAGGCGATAGATTTCGAAGAATCTTTTAAGTGCGAAGAAAAATGTAATCTTGGTCAGCACATAAATATATGTGACATACTCGTACCTCAATATATTtgcaatgaatgtaattttattacactaGAGAAAGACTCTCTAATAGAGCATTtgaaagttaacaaaaatgttcaatatttttgtaaggaatgtaactttaaCACCTGGTTCTCATGTTcgataaaagaacattttaagATACATAAGAGGGTTGGTTGTAAACGTATTtctaaaaaatgtatctttaaGACACCACAAATATTTTCCTTGACATCACAGTTGAAAAAGTCTTTGAGAGAGggactaaaggaacatgtgggGATTCATACTACTGAtggatataagtgtaaggaatgtgattataaagcaCAGTTGAAAATGAGTCTAAAggcacatatgaaaattcatactggtgatgaatataagtgtaaagaatgcgattataaaacgcCGTGGAAaaagagtctaaaggaacatgcgACAAGacatactggtgaagaatataagtgtaaggagtgtgattataaaacacggtGGAAAAGAAGTCTACTGgcacatattaaaattcatactggtgaagaatataagtgtatggaatgtgattataaaacagtttggaaacaGAAACTAAACgatcatataaaaattcataccggtgatggatataaatgtaatgaatgtgactaccaaacagtgagaaaagataatctaaaggaacatatgaaaattcatactggtgttgaatataagtgtaaagaatgtgattataaaacgtcATGGAAAACttgtctaaagaaacatgtgaaaactcatactggtgaagaatataaatgtaaacaatgtgaATATAAAGCAAAGTCGAAAACGAGTCTGAAggcacatgtgaaaattcacattggtaaagaatataagtgtaaggaatgtgattataaagcaaAGTTGAAAACAAGTCTTAAGGCACATACAAAAATTCACattggtgaagaatataagtgtaaggaatgtgattataaaacagtttggagACAGAAACTAAACgatcatataaaaattcataccggcgaagaatataagtgtaaagaatgcaacTATAAAACGGTGAGAAAAGATAGTTTCAAGGGACATATGAaagttcatactggtgatgaatataagtcaCAGTTGAAAACGAATCTAAAggcacatataaaaattcacactggtgaagaatataagtgtaaggaatgtgattataaaacaatttggaaACAGAAACTAAACgatcatataaaaattcataccggtgatgaatataagtgtaatgaatgtaactataaaacagtgagaaaaaataatctacaggtacatatgaaaattcatactggtgatgaacataagtgtaaagaatgtgattataaagcaaAGTTGAAAACgagtctaaaagaacatgtgaaatctcatactggtgatgaatataagtgcaaggaatgtgattataaagcaCAGTTGAAAACGAATCTAAAggcacatatgaaaattcatactggtgaagaatataagtgtaaggaatgtgattataaaacggtgagAAAAGATAGTTTCAAGGGACATATGAaagttcatactggtgatgaatataagtgtaaagaatgtgattataaagcaCAGTTGAAAACGACTCTAAAggcacatatgaaaattcatacttgtgaagaatataagtgtaaagaatgcgattataaaacgcCGTGGACAacttgtctaaaggaacatgcgCAAACTCATACTGGTGAAGactataagtgtaatgaatgtaactataaaacagtgagaaaagaTAGTTTCAAGGGACATATGAaagttcatactggtgatgaatataagtcaaAGTCGAAAACGAGTCTGAAggcacatgtgaaaattcacattggtaaagaatataagtgtaaggaatgtgattataaagcaaAGTTGAAAACAAGTCTTAAGGCACATACAAAAATTCACattggtgaagaatataagtgtaaggaatgtgattataaaacagtttggagACAGAAACTAAACgatcatataaaaattcataccggcgaagaatataagtgtaaagaatgcaacTATAAAACGGTGAGAAAAGATAGTTTCAAGGGACATATGAaagttcatactggtgatgaatataagtgtaaagaatgtgattataaagcaaAGTTGAAAACGAGTCTAAAggcacatataaaaattcacactggtgaagaatataagtgtaaggaatgtgattataaaacaatttggaaACAGAAACTAAACgatcatataaaaattcataccggtgatgaatataagtgtaatgaatgtaactataaaacagtgagaaaaaataatctacaggtacatatgaaaattcatactggtgatgaacataagtgtaaagaatgtgattataaagcaaAGTTGAAAACgagtctaaaagaacatgtgaaatctcatactggtgatgaatataagtgcaaggaatgtgattataaagcaCAGTTGAAAACGAATCTAAAggcacatataaaaattcataccggtgatgaatataagtgtaaggaatgtgattataaaacggtgagAAAAGATAGTTTCAAGGGACATATGAaagttcatactggtgatgaatataagtgtaaagaatgtgattataaagcaCAGTTGAAAACGACTCTAAAggcacatatgaaaattcatacttgtgaagaatataagtgtaaagaatgcgattataaaacgcCGTGGACAacttgtctaaaggaacatgcgCAAACTCATACTGGTGAAGACTATAAGTGTaaggagtgtgattataaaacacggtGGAAAAGAAGTCTAAAggcacatatgaaaattcatactggtgatgaatataagtgtaaagactgcgattataaaacgccgtggaaaaaaagtctaaaggaacatgcgACAAAgcatactggtgaagaatataagtgtaaggagtgTGGTTATAAAACACGCTGGAAAAAGAGTCTAAAGgcgcatatgaaaattcatactggtgaagaatataagtgtaaggaatgtgattataaagcaaAGTTGAAAACGAGTCTAAAGGCACATAcaaaaattcacactggtgaagaatataagtgtaaggaatgtgattataaaacagtttggaaacaGAAACTAAACGatcatataaaaatacatactggtgatgaatataagtgtaatgaatgtaactataaaacagtgagaaaaaataatctacaggtacatatgaaaattcatactggtgatgaatataagtgtaaagaatgtaactataaaacggCGAGAAAAGATAGTTTCAAGggacatatgaaaattcatactggtgataaatataagtttaatAAGCAGTTTTTTCAAAGAGGATATTTTACGACCAATTCTGATAATTGTGCCGATGCGCAGATAGACACTTCTGTTACACCATGTGCATATGATACCTTATATAATCAAGATTACTTCATGGGGTTCCTTGCCCCAGTAATTGTGGAAGGTAGAGAGTGTCCTACTAGTTGGATTGCTACTTcaaATTCCATCGCTAGTGACGATTGTTCAGCAAATCAGAATTCTTGTTGCAGATTTTataataatacttttataaaactGGGGCGAACTGTCGATATAAACAGCAACTATAAATGCGTTTGTAATTGCCCACCTTTAATCGATTGTGTACCGATATAA
Protein Sequence
MDVYYNESYPIKTEVIVKQTFSFCGKYEDSVNEELKMEAIDFEESFKCEEKCNLGQHINICDILVPQYICNECNFITLEKDSLIEHLKVNKNVQYFCKECNFNTWFSCSIKEHFKIHKRVGCKRISKKCIFKTPQIFSLTSQLKKSLREGLKEHVGIHTTDGYKCKECDYKAQLKMSLKAHMKIHTGDEYKCKECDYKTPWKKSLKEHATRHTGEEYKCKECDYKTRWKRSLLAHIKIHTGEEYKCMECDYKTVWKQKLNDHIKIHTGDGYKCNECDYQTVRKDNLKEHMKIHTGVEYKCKECDYKTSWKTCLKKHVKTHTGEEYKCKQCEYKAKSKTSLKAHVKIHIGKEYKCKECDYKAKLKTSLKAHTKIHIGEEYKCKECDYKTVWRQKLNDHIKIHTGEEYKCKECNYKTVRKDSFKGHMKVHTGDEYKSQLKTNLKAHIKIHTGEEYKCKECDYKTIWKQKLNDHIKIHTGDEYKCNECNYKTVRKNNLQVHMKIHTGDEHKCKECDYKAKLKTSLKEHVKSHTGDEYKCKECDYKAQLKTNLKAHMKIHTGEEYKCKECDYKTVRKDSFKGHMKVHTGDEYKCKECDYKAQLKTTLKAHMKIHTCEEYKCKECDYKTPWTTCLKEHAQTHTGEDYKCNECNYKTVRKDSFKGHMKVHTGDEYKSKSKTSLKAHVKIHIGKEYKCKECDYKAKLKTSLKAHTKIHIGEEYKCKECDYKTVWRQKLNDHIKIHTGEEYKCKECNYKTVRKDSFKGHMKVHTGDEYKCKECDYKAKLKTSLKAHIKIHTGEEYKCKECDYKTIWKQKLNDHIKIHTGDEYKCNECNYKTVRKNNLQVHMKIHTGDEHKCKECDYKAKLKTSLKEHVKSHTGDEYKCKECDYKAQLKTNLKAHIKIHTGDEYKCKECDYKTVRKDSFKGHMKVHTGDEYKCKECDYKAQLKTTLKAHMKIHTCEEYKCKECDYKTPWTTCLKEHAQTHTGEDYKCKECDYKTRWKRSLKAHMKIHTGDEYKCKDCDYKTPWKKSLKEHATKHTGEEYKCKECGYKTRWKKSLKAHMKIHTGEEYKCKECDYKAKLKTSLKAHTKIHTGEEYKCKECDYKTVWKQKLNDHIKIHTGDEYKCNECNYKTVRKNNLQVHMKIHTGDEYKCKECNYKTARKDSFKGHMKIHTGDKYKFNKQFFQRGYFTTNSDNCADAQIDTSVTPCAYDTLYNQDYFMGFLAPVIVEGRECPTSWIATSNSIASDDCSANQNSCCRFYNNTFIKLGRTVDINSNYKCVCNCPPLIDCVPI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-