Lyun008152.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001401.1:608200-625033[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 39 0.14 1.9 9.2 0.1 1 21 67 87 67 88 0.95
2 39 0.11 1.6 9.5 1.4 1 23 155 177 155 177 0.98
3 39 0.006 0.085 13.5 6.6 1 23 182 204 182 204 0.99
4 39 0.022 0.31 11.7 0.5 1 23 209 231 209 231 0.99
5 39 0.0076 0.11 13.2 0.4 1 23 236 258 236 258 0.98
6 39 0.054 0.76 10.5 6.8 1 23 263 285 263 285 0.98
7 39 0.00059 0.0083 16.6 3.0 1 23 290 312 290 312 0.99
8 39 0.00039 0.0055 17.2 1.1 1 23 317 339 317 339 0.99
9 39 0.001 0.014 15.9 5.3 1 23 344 366 344 366 0.99
10 39 0.022 0.31 11.7 3.9 1 23 371 393 371 393 0.99
11 39 0.0013 0.018 15.6 1.7 1 23 398 420 398 420 0.99
12 39 0.0055 0.077 13.6 7.0 1 23 425 447 425 447 0.99
13 39 0.0052 0.073 13.7 7.0 1 23 452 474 452 474 0.99
14 39 0.006 0.085 13.5 6.6 1 23 479 501 479 501 0.99
15 39 0.022 0.31 11.7 0.5 1 23 506 528 506 528 0.99
16 39 0.0076 0.11 13.2 0.4 1 23 533 555 533 555 0.98
17 39 0.032 0.46 11.2 7.0 1 23 560 582 560 582 0.98
18 39 0.00059 0.0083 16.6 3.0 1 23 587 609 587 609 0.99
19 39 0.00039 0.0055 17.2 1.1 1 23 614 636 614 636 0.99
20 39 0.001 0.014 15.9 5.3 1 23 641 663 641 663 0.99
21 39 0.0023 0.032 14.8 5.1 1 23 668 690 668 690 0.99
22 39 0.0055 0.077 13.6 7.0 1 23 707 729 707 729 0.99
23 39 0.0052 0.073 13.7 7.0 1 23 734 756 734 756 0.99
24 39 0.072 1 10.1 1.5 1 23 761 783 761 783 0.98
25 39 0.057 0.81 10.4 3.5 1 23 788 810 788 810 0.99
26 39 0.14 1.9 9.2 0.1 1 21 856 876 856 877 0.95
27 39 0.072 1 10.1 1.5 1 23 944 966 944 966 0.98
28 39 0.014 0.21 12.3 6.0 1 23 971 993 971 993 0.99
29 39 0.13 1.8 9.3 0.5 1 23 998 1020 998 1020 0.98
30 39 0.0025 0.036 14.6 0.8 1 23 1025 1047 1025 1047 0.98
31 39 0.01 0.15 12.7 6.4 1 23 1052 1074 1052 1074 0.98
32 39 0.0052 0.073 13.7 7.0 1 23 1079 1101 1079 1101 0.99
33 39 0.0025 0.036 14.6 0.8 1 23 1106 1128 1106 1128 0.98
34 39 0.0077 0.11 13.1 8.0 1 23 1133 1155 1133 1155 0.99
35 39 0.0012 0.016 15.7 0.9 1 23 1160 1182 1160 1182 0.98
36 39 0.072 1 10.1 1.5 1 23 1187 1209 1187 1209 0.98
37 39 0.084 1.2 9.9 2.6 1 23 1214 1236 1214 1236 0.98
38 39 0.0024 0.034 14.7 4.0 1 23 1241 1263 1241 1263 0.99
39 39 0.096 1.4 9.7 2.0 1 23 1268 1290 1268 1290 0.98

Sequence Information

Coding Sequence
ATGGATGTCgattataatgaaatttatccAATAAAAACGGAAGTGATTATAAAGGAAACATTCTCATGTGAAAAATTTGAAGATTCTGCGAGTGAAGAGTTCAAAATAGAGGCGGCAGATTttgaagaatcttttaaatgcgAAGAAGAATATAATCTTGGGCAGCACATCAATATATCTGACGTACTCATACCTCAGTATATTtgcaatgaatgtaattttattacaacggaGAAAGACACTCTAATAGAGCAtttgaaaatcactaaaaatgttcagtatttttgtaaggaatgtaacatTAACACTTGGTTCTCATGTTcgataaaagaacattttaagATGCATAACAGTGTTGCTTGTAGACATATTACTAAAACATGTACCTTTAAGAGACCACAGTTGAAAATGCCTTTGAAAGGGAGAGTAAACGCACATGTGAAAAATCATACCggtgaaaaatataagtgtaaggaatgcgattataaaacgcaGTGGAGACAGAGTCTAAAGGCACATCTAAAAATTCAcactggcgatgaatataagtgtaaggaatgtgattataaatcgaCGACGAAACATTGTCTGAAGGAACATGtgagaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacagtttggaaacaGAGCCTCGAGGCAcatctgaaaattcatactggtgaagaatataagtgtaatgaatgtaactataaatcTGTAAGGATTGCGTTGcttaaggaacatgtaaaaattcatactggtgataaatataattgtaaggaatgtaattataaaacgaGGACGAAGCATTGTCTAAAGGATCATGcaagaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacgaggACGAAACgttatctaaaggaacatgtaaaaattcatactggtgatgagtataagtgtaaggaatgtaactataaatcTGTGAGGTTAGCAACGCTtaaggaacatatgaaaattcatactggtgataaatataagtgtaaggaatgtaattatacaacGAGGACGAAATATTGTCTAAAGGATCATGtaagaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaagggCAAAAcgttgtctaaaggaacatgtaagaattcataccggtgatgaatataagtgtaaggaatgtaactataCATCTGTGAGGTTAACAACACTTAagcaacatgtgaaaattcatactggtgataaatataagtgtaaggaatgtgattataaaacgaggACGAAACATTGTCTAAAGGACCATGTacgaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacgaggACGAAacattgtctaaaggaacatgtaagaattcatactggtgatgaatataagtgtaaggaatgtgattataaatcgaCGACGAAACATTGTCTGAAGGAACATGtgagaattcatactggtaatgaatataagtgtaaggaatgtgattataaaacagtttggaaacaGAGCCTCGAGGCAcatctgaaaattcatactggtgaagaatataagtgtaatgaatgtaactataaatcTGTAAGGATTGCGTTGcttaaggaacatgtaaaaattcatactggtgataaatataattgtaaggaatgtaattataaaacgaGGACGAAGCATTGTCTAAAGGATCATGtaagaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacgaggACGAAACgttatctaaaggaacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtaactataaatcTGTGAGGTTAGCGACGCTtaaggaacatatgaaaattcatactggtgataaatataagtgtaaggaatgtaattatacaacGAGGACGAAATATTGTCTAAAGGATCATGtaagaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacgaggACAAAAcgttgtctaaaggaacatgtaagaattcatactggtgatgatataagtcaacatgtgaaaattcatactggtgataaatataagtgtaaggaatgtgattataaaacgaggACGAAACATTGTCTAAAGGACCATGTacgaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacgaggACGAAacattgtctaaaggaacatgtaagaattcatactggtgatgaatataagtgtaaggaatgtgattataagacgcagtggaaacagagtctaaaggcacatctgaaaattcatactggtgaagaatataagtgtaaggaatgtgattataaaacacagtggaaacagagtctaaagaaACATCTAAAAAcgcacactggtgatgaatataagtATTCTGTGAATGAAGAGTTTAAAATAGAGGCAGTAGATTtcgaagaatcttttaaatgcgAAGAAGAATATAGTCTTGGGCAGCACATGGATATATCTGACATATTTATACCTCagtatatttgtaatgaatgtaattttattacaactgaAAAAGACACTCTAATAGAGCAtttgaaaatcactaaaaatgttcagtatttttgtaaggaatgtaacatTAACACTTGGTTCTCATGTTCGATAAAAGAACATTTCAGGATACATAACAGTGTTGCTTGTAGACATATTACTAAAACATGTACCTTTAAGAGACCACAGTTGAAAACGCCTTTGAAAGGGGGACTAAAggcacatataaaaattcatactggtgaagaatataagtgtaaagaatgcgattataaaacgcagtggaaacagagtctaaaggcacatctaaaaattcacactggtgatgaatataaatgtatggaatgtgattataaaacaacaacgaaacattgtctaaaggaacatgtcagaattcatactggtaatcaatataagtgtaaggaatgtgattataaaacagtttggaaacaGAGTCTAGATGCACATctgaaaattcacactggtgatgaatataagtgtaaggaatgtaactataaatcTGTGAGATTAGCAACGCttaaggaacatgtgaaaattcatactggtgataaatatgagtgtaaggaatgtaattataaaacgaGGACAAAACATTGTCTAAAAGACCATGtaagaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacgaggacgaaacattgtttaaaggaacatgtaagaattcatactggtgatgaatataagtgtaaggaatgtaactataaatcTGTGAGGTTAGCGACGCttaaggaacatgtgaaaattcatactggtgataaatataagtgtaaggaatgtaattataaaacgaGGACGAAACATTGTCTAAAAGACCATCtaagaattcatactggtgccgaatataagtgtacggaatgtaactataaatcAGTGCGGAAAGCGATGcttaaggaacatgtaaaaattcatactggtgatgtatataagtgtaaggaatgtgattataaaacgcaatggaaacagagtctaaaggcacatctgaaaattcatactggtgaagaatataagtgtaaggaatgtgattataaaacgcagtggaaacagagtttaaagaaacatctgaaaattcacacaggtgatgaatataagtgtaaggaatgtgattataaaacgaggACGGAATAttgtttaaaggaacatgtaagaattcatactggtgatgaatataagtgtaaggattgtgattataaaacgcagtggaaacagagtctaacgaaacatgtgaaaattcatactggtgatgaatataagtgtaaggaatga
Protein Sequence
MDVDYNEIYPIKTEVIIKETFSCEKFEDSASEEFKIEAADFEESFKCEEEYNLGQHINISDVLIPQYICNECNFITTEKDTLIEHLKITKNVQYFCKECNINTWFSCSIKEHFKMHNSVACRHITKTCTFKRPQLKMPLKGRVNAHVKNHTGEKYKCKECDYKTQWRQSLKAHLKIHTGDEYKCKECDYKSTTKHCLKEHVRIHTGDEYKCKECDYKTVWKQSLEAHLKIHTGEEYKCNECNYKSVRIALLKEHVKIHTGDKYNCKECNYKTRTKHCLKDHARIHTGDEYKCKECDYKTRTKRYLKEHVKIHTGDEYKCKECNYKSVRLATLKEHMKIHTGDKYKCKECNYTTRTKYCLKDHVRIHTGDEYKCKECDYKTRAKRCLKEHVRIHTGDEYKCKECNYTSVRLTTLKQHVKIHTGDKYKCKECDYKTRTKHCLKDHVRIHTGDEYKCKECDYKTRTKHCLKEHVRIHTGDEYKCKECDYKSTTKHCLKEHVRIHTGNEYKCKECDYKTVWKQSLEAHLKIHTGEEYKCNECNYKSVRIALLKEHVKIHTGDKYNCKECNYKTRTKHCLKDHVRIHTGDEYKCKECDYKTRTKRYLKEHVKIHTGDEYKCKECNYKSVRLATLKEHMKIHTGDKYKCKECNYTTRTKYCLKDHVRIHTGDEYKCKECDYKTRTKRCLKEHVRIHTGDDISQHVKIHTGDKYKCKECDYKTRTKHCLKDHVRIHTGDEYKCKECDYKTRTKHCLKEHVRIHTGDEYKCKECDYKTQWKQSLKAHLKIHTGEEYKCKECDYKTQWKQSLKKHLKTHTGDEYKYSVNEEFKIEAVDFEESFKCEEEYSLGQHMDISDIFIPQYICNECNFITTEKDTLIEHLKITKNVQYFCKECNINTWFSCSIKEHFRIHNSVACRHITKTCTFKRPQLKTPLKGGLKAHIKIHTGEEYKCKECDYKTQWKQSLKAHLKIHTGDEYKCMECDYKTTTKHCLKEHVRIHTGNQYKCKECDYKTVWKQSLDAHLKIHTGDEYKCKECNYKSVRLATLKEHVKIHTGDKYECKECNYKTRTKHCLKDHVRIHTGDEYKCKECDYKTRTKHCLKEHVRIHTGDEYKCKECNYKSVRLATLKEHVKIHTGDKYKCKECNYKTRTKHCLKDHLRIHTGAEYKCTECNYKSVRKAMLKEHVKIHTGDVYKCKECDYKTQWKQSLKAHLKIHTGEEYKCKECDYKTQWKQSLKKHLKIHTGDEYKCKECDYKTRTEYCLKEHVRIHTGDEYKCKDCDYKTQWKQSLTKHVKIHTGDEYKCKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-