Lyun007067.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:2045425-2049324[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 34 0.11 1.6 9.5 0.9 1 21 68 88 68 89 0.95
2 34 0.071 1 10.1 0.9 1 23 152 174 152 174 0.97
3 34 0.00076 0.011 16.3 3.2 1 23 179 201 179 201 0.99
4 34 3.3e-05 0.00047 20.6 1.4 1 23 206 228 206 228 0.99
5 34 0.13 1.9 9.2 0.9 1 23 233 255 233 255 0.98
6 34 0.00076 0.011 16.3 3.2 1 23 260 282 260 282 0.99
7 34 1.3e-05 0.00018 21.9 1.6 1 23 287 309 287 309 0.99
8 34 0.00073 0.01 16.3 1.8 1 23 314 336 314 336 0.99
9 34 0.24 3.5 8.4 3.4 1 23 341 363 341 363 0.98
10 34 0.0018 0.025 15.1 3.8 1 23 368 390 368 390 0.99
11 34 0.0048 0.067 13.8 1.6 1 23 395 417 395 417 0.98
12 34 0.00076 0.011 16.3 3.2 1 23 422 444 422 444 0.99
13 34 0.13 1.9 9.2 0.9 1 23 449 471 449 471 0.98
14 34 0.0018 0.025 15.1 3.8 1 23 490 512 490 512 0.99
15 34 0.0048 0.067 13.8 1.6 1 23 517 539 517 539 0.98
16 34 4e-05 0.00057 20.3 2.1 1 23 544 566 544 566 0.99
17 34 0.033 0.47 11.1 1.2 1 23 571 593 571 593 0.99
18 34 0.23 3.2 8.5 0.5 1 23 598 620 598 620 0.96
19 34 0.00013 0.0018 18.7 2.0 1 23 625 647 625 647 0.99
20 34 0.017 0.24 12.0 1.2 1 23 652 674 652 674 0.99
21 34 0.0024 0.034 14.7 4.3 1 23 716 738 716 738 0.99
22 34 0.00023 0.0032 17.9 3.0 1 23 743 765 743 765 0.99
23 34 0.021 0.3 11.7 1.6 1 23 770 792 770 792 0.99
24 34 0.23 3.2 8.5 0.5 1 23 797 819 797 819 0.96
25 34 0.00013 0.0018 18.7 2.0 1 23 824 846 824 846 0.99
26 34 0.017 0.24 12.0 1.2 1 23 851 873 851 873 0.99
27 34 0.22 3.1 8.5 2.3 1 23 878 900 878 900 0.97
28 34 7.1e-05 0.001 19.5 3.0 1 23 905 927 905 927 0.99
29 34 0.0024 0.034 14.7 4.3 1 23 932 954 932 954 0.99
30 34 0.22 3.1 8.5 2.3 1 23 959 981 959 981 0.97
31 34 0.00023 0.0032 17.9 3.0 1 23 986 1008 986 1008 0.99
32 34 0.0024 0.034 14.7 4.3 1 23 1013 1035 1013 1035 0.99
33 34 0.00023 0.0032 17.9 3.0 1 23 1040 1062 1040 1062 0.99
34 34 0.0061 0.086 13.5 1.9 1 23 1067 1089 1067 1089 0.99

Sequence Information

Coding Sequence
aTGAATGCTGATTCTATTGAAACTTGTGCTATTAAATCTGAATTGAACTTAATAGAAACGTTTTCGTTTTGTGGCCAATATGGAGAGTATGgggataaagaactaaaaacagagtcagtagactacaaagaatcttttaaatgtaaggaagaagATATTTCTGTGGAGCAGACGGATGTGCATGCTGCTCCAATGcaacaattttcttgtaatgagtgtGACTTTATGACAGTGCAAAAATGTTCACTATTAGAAcacttgaaaattattaaaaatgttcaatattcttGTAAGGAGTGCAACTTCACAACCCGGTTACAATGTtccataaaaaaacatttcggGATTCACAAAAGGGTTGATGATAAATATATTATAGAAGAATATAGTTTTCAGACATCACAGAATTTCTGTTTAACACCACAGTGGAAAACTAcacaaaattgtgacaaatatatttgtaatgaatgtaattataccacattAATCAAAAAGAATCTAACAAGACATGTTAAAATCCATAAAGGggttgaatataaatgtaaagaatgtgattataaaacagtgcgcaAATATCGTCTAAagcaacatctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctgatgcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagaatGGCAAAGTAGTATAAaccaacatctcaaaattcatacaggtgatgaatataagtgtaaagaatgcgattataaaacagtgcgcaAATATCGTCTAAagcaacatctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcgacatgtcaaaattcatacaggtgatggatataagtgtacagaatgtgactataaaacggtgCGAAAAGATCgcctaaagcaacatgtcaaaattcatacaggtgatggatataagtgtaaagaatgtgactataaaacaccatggcgaaatagtctaaagcaacatcacaaaattcatacaggtgatgaatataagtgtaatgaatgtgactataaaacagtgcggaaatatTGTCtcaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgcgattataaaacattgcgaAAAGATGACCTAAAGctacatctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcgcaAATATCGTCTAAagcaacatctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagaatGGCAAAGTAGTATAAaccaacatctcaaaattcatacagAatggcaaagtagtctaaagcaacatcacaaaattcatacaggtgatgaatataagtgtaatgaatgtgactataaaacagtgcggaaatatTGTCtcaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgcgattataaaacattgcgaAAAGATGACCTAAAGctacatctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggaaagatTACctaaagcaacatatcaaaattcatacaggtgataaatataagtgtaaagaatgtgattataaaacagcatggcgaaagagtctaaaggaacatctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagcatggctaagaagtctaaagcaacatgttgaaattcatacaggtgatgaatataagtgtaaagaatgtgactataaaacagtgcgaaaagattacctaaagcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagcatggcaaaatagtctaaagcaacatctcaaaattcataacagtctaaagcaacatgttgaaattcatacaggtgatgatataagtgtaaagaatgtgactataaaacagtgcgaaaagaacATCTCaaggaacacgtcaaaattcatacaggtgaatgaatataagtgtaaagaatgtgactataaaacagtgcgaaaatatTGTCtcaaggaacatgtcaaaattcatacaggtgatgaatataagtgcaaagaatgtgactataaaacagtgcgaaaagaacATCTcaaggaacatgttaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtatggaaaaatagtctaaagcaacatcttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagcatggctaagaagtctaaagcaacatgttgaaattcatacaggtgatgaatataagtgtaaagaatgtgactataaaacagtgcgaaaagattacctaaagcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagcatggcaaaatagtctaaagcaacatctcaaaattcatacaggggatgaatataagtgtaaagaatgtgattataaaacagtatggaaaaatagtctaaagcaacatgtcaaatttcatacaggtgatgaatataagtgcaaagaatgtgactataaaacagtgcgaaaagaacATCtcaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgactataaaacagtgcgaaaatatTGTCtcaaggaacatgtcaaaattcatacaggggatgaatataagtgtaaagaatgtgattataaaacagtatggaaaaatagtctaaagcaacatgtcaaatttcatacaggtgatgaatataagtgcaaagaatgtgactataaaacagtgcgaaaagaacATCTCaaggaacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgactataaaacagtgcgaaaatatTGTCtcaaggaacatgtcaaaattcatacaggtgatgaatataagtgcaaagaatgtgactataaaacagtgcgaaaagaacATCTcaaggaacatgttaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaatcaatatGGCAAAATTCCCTAAAGAAACATATCAGAAGACACAGGTGA
Protein Sequence
MNADSIETCAIKSELNLIETFSFCGQYGEYGDKELKTESVDYKESFKCKEEDISVEQTDVHAAPMQQFSCNECDFMTVQKCSLLEHLKIIKNVQYSCKECNFTTRLQCSIKKHFGIHKRVDDKYIIEEYSFQTSQNFCLTPQWKTTQNCDKYICNECNYTTLIKKNLTRHVKIHKGVEYKCKECDYKTVRKYRLKQHLKIHTGDEYKCKECDYKTVQKSNLMQHVKIHTGDEYKCKECDYKTEWQSSINQHLKIHTGDEYKCKECDYKTVRKYRLKQHLKIHTGDEYKCKECDYKTVQKSNLMRHVKIHTGDGYKCTECDYKTVRKDRLKQHVKIHTGDGYKCKECDYKTPWRNSLKQHHKIHTGDEYKCNECDYKTVRKYCLKEHVKIHTGDEYKCKECDYKTLRKDDLKLHLKIHTGDEYKCKECDYKTVRKYRLKQHLKIHTGDEYKCKECDYKTEWQSSINQHLKIHTEWQSSLKQHHKIHTGDEYKCNECDYKTVRKYCLKEHVKIHTGDEYKCKECDYKTLRKDDLKLHLKIHTGDEYKCKECDYKTVRKDYLKQHIKIHTGDKYKCKECDYKTAWRKSLKEHLKIHTGDEYKCKECDYKTAWLRSLKQHVEIHTGDEYKCKECDYKTVRKDYLKQHVKIHTGDEYKCKECDYKTAWQNSLKQHLKIHNSLKQHVEIHTGDDISVKNVTIKQCEKNISRNTSKFIQVNEYKCKECDYKTVRKYCLKEHVKIHTGDEYKCKECDYKTVRKEHLKEHVKIHTGDEYKCKECDYKTVWKNSLKQHLKIHTGDEYKCKECDYKTAWLRSLKQHVEIHTGDEYKCKECDYKTVRKDYLKQHVKIHTGDEYKCKECDYKTAWQNSLKQHLKIHTGDEYKCKECDYKTVWKNSLKQHVKFHTGDEYKCKECDYKTVRKEHLKEHIKIHTGDEYKCKECDYKTVRKYCLKEHVKIHTGDEYKCKECDYKTVWKNSLKQHVKFHTGDEYKCKECDYKTVRKEHLKEHVKIHTGDEYKCKECDYKTVRKYCLKEHVKIHTGDEYKCKECDYKTVRKEHLKEHVKIHTGDEYKCKECDYKSIWQNSLKKHIRRHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-