Lyun008816.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001556.1:240126-242630[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.77 11 6.8 0.0 2 21 67 86 66 87 0.93
2 26 1.1 15 6.4 2.3 1 23 145 167 145 167 0.97
3 26 0.0017 0.024 15.2 0.3 1 21 172 192 172 193 0.95
4 26 0.00013 0.0019 18.7 1.9 1 23 199 221 199 221 0.99
5 26 3.9e-05 0.00055 20.4 1.0 1 23 226 248 226 248 0.99
6 26 0.032 0.45 11.2 2.9 1 23 253 275 253 275 0.98
7 26 0.0028 0.039 14.5 2.8 1 23 280 302 280 302 0.99
8 26 0.0003 0.0042 17.6 3.0 1 23 307 329 307 329 0.99
9 26 4.8e-05 0.00068 20.1 2.3 1 23 334 356 334 356 0.99
10 26 0.035 0.49 11.1 5.7 1 23 361 383 361 383 0.98
11 26 0.012 0.18 12.5 1.2 1 23 388 410 388 410 0.99
12 26 0.0034 0.049 14.2 2.3 1 23 415 437 415 437 0.98
13 26 1e-05 0.00014 22.2 1.7 1 23 442 464 442 464 0.99
14 26 5.4e-05 0.00076 19.9 2.4 1 23 469 491 469 491 0.99
15 26 0.00083 0.012 16.2 2.6 1 23 496 518 496 518 0.99
16 26 0.0002 0.0028 18.2 1.6 1 23 523 545 523 545 0.99
17 26 0.0063 0.089 13.4 3.1 1 23 550 572 550 572 0.98
18 26 6.1e-06 8.6e-05 22.9 2.0 1 23 577 599 577 599 0.99
19 26 4.2e-05 0.0006 20.2 2.0 1 23 604 626 604 626 0.99
20 26 9.9e-06 0.00014 22.2 1.8 1 23 631 653 631 653 0.99
21 26 0.00083 0.012 16.2 2.6 1 23 658 680 658 680 0.99
22 26 0.0002 0.0028 18.2 1.6 1 23 685 707 685 707 0.99
23 26 0.0063 0.089 13.4 3.1 1 23 712 734 712 734 0.98
24 26 9.9e-06 0.00014 22.2 1.8 1 23 739 761 739 761 0.99
25 26 0.0002 0.0028 18.2 1.6 1 23 766 788 766 788 0.99
26 26 0.096 1.4 9.7 4.0 1 23 793 815 793 815 0.99

Sequence Information

Coding Sequence
ATGGATAGTGATTctattgaaagttgtgcaataaaatctgaagtgattttaacgGAAACGTTTTGTGGACAATATGGAGGTTATGGGGATGAAGGACTAAAAACAGAAACAGTTGATTACGAAGAATCTTTTAATTGTAAGGCAGAAGTTATTTCTGTAGAACACGTGGGCGAGCATGCTGCTCCGATCCAACAAGTTTCTTGTAATGAGTGTGACTTTATGACAATGGAAAaagattctctaatagaacacttgaaaattactaaaaatgttcaatattcatgcaaggaatgtaactttacaacccAGTTACGATGTGCCATGAGAAAGCATTTCAGGGCGCACAAAGGAGTACATGATAAATATATTGTTGAAGAATGTAATTTGCTGACATCACAGATTTTCCGATTAACTCCAAATAGTGgtgacaaatatatttgtaatgaatgtaattataatacattAATCAAAAGTTGTTTAAGacgacatgttaaaattcataaagcgGCTGAATACAAATGTagagaatgtgactataaaacagttcAAAAaggtaatctaaaggaacatgtcaaaatttgtacaagtgttgaatataaatgtaaagaatgtgactataaaacagtgcgaaaaaattccttaaaggaacatctgaaaattcatacaggtgatgaatataagtgtaaagagtgcgattataaaacaatacggcAAAGtgatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaagttgtctaaagaaacatgtcaacaTTCATACacgtgatgaatataagtgtaatgaatgtgattttaaaacagtgtggcaatattatctaaagaaacatatgaAAACTCATACAGGTGATTTATATAAATgcgaagaatgtgattacaaaacagtgcaAAAAGATTGTCTAAAGCgccatgtgaaaattcatacgggtgatgaatataaatgtaaagaatgtgattataaaacggtgcgaaaagattatctaaaaaatcatctcaaaattcatacaggtgatgaatataaatgtaaagcatgtgactataaaacagtgcgaaaagattgTCTAAAGcaccatgtcaaaattcatatgggtgatgaatataaatgtaaagaatgtgattataaaacagtgtggcaaaatAGTCTAAGAAatcatctcaaaattcatacaggcaatgaatataaatgtaatgaatgtgattataaaacactgcgaaaagattatctaaaaaaacatgtaaaaattcatacaggtgataaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacggtgcgaaaagattatctaaaaaaacatgtcaaaattcatacaggcgatgaatataaatgtaaagaatgtgattataaaacagtgtataTAGATCACCTAAggagacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacggtgcgaaaagatcgtctaaaggaacatatcaaaattcatacaggcgatgaatataaatgtaatgaatgtgattataaaacactgcgaAAATATTACCTaaaaaaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAGGagacatctcaaaattcatacaggcgatgaatataaatgtaatgaatgtgattataaaacggtgcgaaaagattatctaaaaaaacatgtaaaaattcatacaggcgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAagagacatgtcaaaattcatacaggcgatgaatataaatgtaaagaatgtgattataaaacagtgtataTAGATCACCTAAggagacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacggtgcgaaaagatcgtctaaaggaacatatcaaaattcatacaggcgatgaatataaatgtaatgaatgtgattataaaacactgcgaAAATATTACCTaaaaaaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAagagacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacggtacgaaaagatcgtctaaaggaacatatcaaaattcatacaggcgatgaatataaatgtaaagagtgtgattataaaacaccatggaagtaTTGTCTAAATTCACATATCAAAAGACATGGATGA
Protein Sequence
MDSDSIESCAIKSEVILTETFCGQYGGYGDEGLKTETVDYEESFNCKAEVISVEHVGEHAAPIQQVSCNECDFMTMEKDSLIEHLKITKNVQYSCKECNFTTQLRCAMRKHFRAHKGVHDKYIVEECNLLTSQIFRLTPNSGDKYICNECNYNTLIKSCLRRHVKIHKAAEYKCRECDYKTVQKGNLKEHVKICTSVEYKCKECDYKTVRKNSLKEHLKIHTGDEYKCKECDYKTIRQSDLKEHVKIHTGDEYKCKECDYKTVWQSCLKKHVNIHTRDEYKCNECDFKTVWQYYLKKHMKTHTGDLYKCEECDYKTVQKDCLKRHVKIHTGDEYKCKECDYKTVRKDYLKNHLKIHTGDEYKCKACDYKTVRKDCLKHHVKIHMGDEYKCKECDYKTVWQNSLRNHLKIHTGNEYKCNECDYKTLRKDYLKKHVKIHTGDKYKCKECDYKTVQKDNLRRHVKIHTGDEYKCKECDYKTVRKDYLKKHVKIHTGDEYKCKECDYKTVYIDHLRRHVKIHTGDEYKCKECDYKTVRKDRLKEHIKIHTGDEYKCNECDYKTLRKYYLKKHVKIHTGDEYKCKECDYKTVQKDNLRRHLKIHTGDEYKCNECDYKTVRKDYLKKHVKIHTGDEYKCKECDYKTVQKDNLKRHVKIHTGDEYKCKECDYKTVYIDHLRRHVKIHTGDEYKCKECDYKTVRKDRLKEHIKIHTGDEYKCNECDYKTLRKYYLKKHVKIHTGDEYKCKECDYKTVQKDNLKRHVKIHTGDEYKCKECDYKTVRKDRLKEHIKIHTGDEYKCKECDYKTPWKYCLNSHIKRHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-