Lyun013453.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002019.1:3987135-4030487[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 37 0.0093 0.13 12.9 0.6 1 23 161 183 161 183 0.98 2 37 2 28 5.6 2.5 1 23 188 210 188 210 0.96 3 37 0.0074 0.1 13.2 2.5 1 23 215 237 215 237 0.98 4 37 0.36 5.1 7.9 3.8 1 23 242 264 242 264 0.95 5 37 0.25 3.6 8.3 0.8 1 23 269 291 269 291 0.97 6 37 0.055 0.78 10.4 0.9 1 23 296 318 296 318 0.98 7 37 0.00068 0.0097 16.4 0.5 1 23 343 365 343 365 0.98 8 37 0.0031 0.045 14.4 1.6 1 23 370 392 370 392 0.98 9 37 5.6e-05 0.00079 19.9 1.7 1 23 397 419 397 419 0.99 10 37 0.0065 0.092 13.4 5.7 1 23 424 446 424 446 0.97 11 37 0.0082 0.12 13.0 1.2 1 23 451 473 451 473 0.98 12 37 0.0021 0.03 14.9 0.8 1 23 478 500 478 500 0.98 13 37 0.021 0.3 11.7 0.6 1 23 647 669 647 669 0.98 14 37 0.024 0.35 11.5 1.2 1 23 674 696 674 696 0.98 15 37 0.12 1.7 9.4 1.1 1 23 701 723 701 723 0.98 16 37 0.002 0.029 14.9 3.2 1 23 728 750 728 750 0.98 17 37 1.5 21 6.0 0.8 1 23 755 777 755 777 0.94 18 37 3.3e-05 0.00046 20.6 0.7 1 23 782 804 782 804 0.98 19 37 0.0064 0.09 13.4 0.9 1 23 809 831 809 831 0.98 20 37 0.00029 0.004 17.6 1.6 1 23 836 858 836 858 0.98 21 37 0.0025 0.035 14.7 0.6 1 23 863 885 863 885 0.98 22 37 0.83 12 6.7 0.4 1 23 1001 1023 1001 1023 0.97 23 37 1.3 18 6.2 1.0 1 23 1028 1050 1028 1050 0.95 24 37 0.01 0.15 12.7 0.6 1 23 1055 1077 1055 1077 0.98 25 37 0.0079 0.11 13.1 2.0 1 23 1109 1131 1109 1131 0.98 26 37 2.1e-05 0.0003 21.2 2.0 1 23 1136 1158 1136 1158 0.98 27 37 1.5 21 6.0 0.8 1 23 1163 1185 1163 1185 0.94 28 37 7.3e-05 0.001 19.5 1.3 1 23 1190 1212 1190 1212 0.98 29 37 4.6e-06 6.5e-05 23.3 1.3 1 23 1217 1239 1217 1239 0.98 30 37 1.2 17 6.2 0.8 1 23 1244 1266 1244 1266 0.95 31 37 0.0082 0.12 13.0 4.2 1 23 1271 1293 1271 1293 0.97 32 37 0.014 0.2 12.3 1.1 1 23 1298 1320 1298 1320 0.98 33 37 0.00019 0.0027 18.2 3.2 1 23 1325 1347 1325 1347 0.99 34 37 0.0064 0.091 13.4 2.3 1 23 1352 1374 1352 1374 0.98 35 37 0.001 0.014 15.9 0.7 1 23 1379 1401 1379 1401 0.98 36 37 0.17 2.4 8.9 2.6 1 23 1406 1428 1406 1428 0.98 37 37 0.00051 0.0072 16.8 0.9 1 23 1433 1455 1433 1455 0.98
Sequence Information
- Coding Sequence
- ATGTATGACAATGTGAAGGCCCTTTGTGTTGACATATCATCCGAATATCCCATCAATTCTCAGTACCACCATGAACAATGGGGTCTGCTGTATATTGATTGGCATGCTCCtattaccaattttttttatggcaGTAATCAATTTCTTGATTATGGGAATAATGAATTGAAATTGGAAACCGTAGATATGAAAGGAGGGTTTAAATCCAAGGAAACAGATAACATTGCAAAAAAAGTTGATATGTATACCATTCAACAATATCCTTACAAGGAAGGTGAAATGGATGTTGATTCCATTGATAGTTCtccaataaaatctgaagtgattgtaaaagaaacattttcattttatgaaaaatatggaGATTATCTTAATGAAGAATTGAAATTGGAACCAGTGGACTTTAAAGAACCTTTGAAATATGGGAAAAAAGATATTCCTGCGGAACACTTAGTTATATATTCCACACCGATACAACAATAtgcttgtaatgaatgtaattttacaacaatGGAGAAAAATTCTCTCATAAAACATTTGCGAATTCATATAGATAATAACTACACTTGCAAGgagtgtgactataaaacattgtggaaacattctctaaaggaacatatgaatattcatacaggtgacaaatacaTTTGcatggaatgtgattataaaaccgtGAGAAAATGCAATCTAAGACAACATGTGAAGATTCATATGGGTGATAAACATAGTTGCAAGCAGTGTGGCtataaaacattgtggaaaagcaatttaaagaaacacatgaaaattcacATGGGGGATAAATATACTTGTAAAgagtgtgactataaaacatgGTGGAAAAGTTCTCTAAAGGAACACATGAATattcacacaggtgataaaTACTTTTGCAAGgagtgtgactataaaacagtgtggaaaggcTATCTAAGGgaacacatgaaaattcatataGGCGATAAATATACTTGCAATGAGtgcaactataaaacaGAACACATGAACATTCACACAGGTGACGAATACATTTGcatggaatgtgattataaaacagcgagAAAAGGCTATTTAAGGgaacacatgaaaattcatataGGGGATAAATATACTTGCAAGaagtgtgactataaaacagtgtctATAAGCTATCTAAGACAACATGTGAAGATTCATATGGATGATAAATACACTTGCAAGgagtgtgactataaaacagtgaggaaataTTCTCTAAAAGAACACATGAACATTCACACAGGACAGCGacacatttgtaatgaatgtcattataaaacagtgagtaAAAGCAGTTTAAGATATCACATGAAAAGCCATATGGGGGATAAATATACTTGTAAAGAGTGTGACTATAAAACCTCatggaaaaattctctaaaggaacacatgaacattcatacaggcgatgaatacaTGTGTAAGgcatgtgattacaaaacagtgagAAAAGCCTATCTAAGAGAACACATGAAAATTCACATAGtcTATATTAGCTTCAAAATGCCCGAAACACTATGTGTAGTGTGTGGCGTGCACAaagaagaagctgaaaaaatgcataattttccAAGAAATCTAGAAAAATTATGGGATGAATTGATATCGGAACCAGTAGATATGGAAGAAGGGTTTAACTCTAAGGAAGAAGATAACATTGCAAAGCAAGTTGATGTGTATGCCTTTCCCATACAACAATATCCTAACAAGGAAGGTGAAATGGATGTTGATTCCATTGATAGTACtccaataaaatctgaagtgattgtaaaagaaacattttcattttgtgaaaaatatggAGATTATCTTAATGAAGAATTGAAATCGGAACCAGTGAATTTTGAAGAACCTTTGAAATATGGGAAAAAAGATAATCCTGCAGAACACTTAGATATATATTCTACTCCAATAAAACAATAtgcttgtaatgaatgtaattttacaacaatGGAGAAAAATTCTCtgataaaacatttgaaaattcatgtaCGTGATAAATATACTTGCAAGgagtgtgactataaaacagtgtggaaaagctATCTAAGACAACATGTGAAGATTCATATGGGTGATAAATATACTTGCAAGGAGTGTGTATATAAAACATCgtggaaaaattctctaaaggaGCACATGAACATTCACACAGGTGCCAAATACATTTGCAAagactgtgattataaaacggtgagAAAATGCAATCTAAGTCAACATCTGAAGATTCATATGGGTGATAAATATACTTGCAAGgagtgtgactataaaacattgtggaaaAATTCTCTCAATGAACACATGAacattcatacaggtgatgaatacatttgcaaggaatgtgattataaaacagtgagaaaaggCAATCTAAGGgaacacatgaaaattcatataGGAGATAAATATACTTGCAAGgagtgtgactataaaacatcaTGGAAAGGCAATCTAAGACAACATGTGAAGATTCATATGGATGATAAATATACTTGCAAGGAGtgtgactttaaaacagtgagaaaaaattctctaaaggaacacatgaacattcatacaggtgacgaatacaTTTGCAGTGAATGTGGTTATAAATCAATGAGAAAAGGCACTCTAAGACAACATGTGAAGATTCATATGGATGattatggAAATGATGAATTGAAATTGGAACCACTAGATATGGTAGAAGGGTTTAAATCCAAGGAAAAAGATAACATTGCAAAACAAGTTGATGTGTATGCCTTTCCCATACAACAATATCCTTACAAGGAAGGTGAGATGGATGTTGATTCCATTGATAGTTCTCCAATCAAATCTGAAGTGAtagtaaaagaaacattttcattttgtgaaaaatatgaagATTATCCTAACGAAGAATTGAAATCACAACCAGCGGATTTTGAAGAACCTTTGACATATGAAAAAAAAGATAATCCTGCGGAACACTTACATATGTATTCTACTCCTCTACAACAATACgcttgtaatgaatgtaattttagaaCAATGGAGAAAGTTtctctaatagaacattttaaaattcatataggCGATAAATATACTtgcaaggaatgtgactataaaacattgtggaaaAATTCTCTTAAGGAACACATGAacattcatacaggtgaagaatacaTTTGCAAGgagtgtgactataaaacagtttggaaaagtaatctaagacAACATGTGAAGATTCATATGGATGATACATATACATGCAAGGAGCGTAACTATGAAACACTGAGGAAACATTCTCTAAAGgaacacatgaaaattcatacaggagagcaatacatttgtaatgaatgtcattataaaacaaTGAGTAAAGGCAGTCTTAGGGAACACTTGAAAATTCATATGGGGGATAAATATACTTGCAAGgagtgtgactataaaacagtgactAAAAGCAATCTAAAGAAACACGTGAAAATTCATATGGGGGATAAATATACTtgcaaggaatgtgactataaaacattgtggaaaaattctctaaatGAACACATGAACATTCATACAGGTGTCACATACTTttgcaaggaatgtgattataaaacagtgaggaaaggCAATCTAAGGGaccatatgaaaattcatataggGGATAAATATCCTTGCAAAgagtgtgactataaaacagtgagtaAAAGCAATCTAAGgaaacacatgaaaattcatatggGGGATAAATATACTTGCAAGgtttgtgactataaaacattgtggaaaaattctctaaaggtACACATGAACATTCATACAGGTGTCACATTCTTttgcaaggaatgtgattataaaacagtgagaaaatgtaatctaacacaaCATGTGAAGATTCATGTGGGTGATAAATATACTTGCAAGgagtgtgactataaaacagtgtggaaatacAATCTAACACAACATGTGAAGATACATATGAATGATAAATATACTTGCAAGgagtgtgactataaaacagtaaggaAGCATTCTCTAAAGGAACACATGAACATTCATACAGGAGAGCGatacatttgtaatgaatgtcattataaaacagtgagtaAAGGGACCCTAAGGGAACACTTGAAAAATCATATGGAGAAGAAATATACTTGCAAGgagtgtgactataaaactgtgCGTGTAGGCAGTCTAAGACAACATCTGAAGATTCATATGGATGATAAATATACTTGCAGAGAGTGTGACTTTAAAACGGCGTGGAAACATTCTCTAAAGCAACACATGAacattcatacaggtgatgaatacatTTGCAACGAATGTGGTTATAAATCAATAACAAAAACCACTCTAAGACAGCATTTGAAGATTCACATTGAATCATGTGTCATTAGTGCAAgtgaaagtttaattattaattaa
- Protein Sequence
- MYDNVKALCVDISSEYPINSQYHHEQWGLLYIDWHAPITNFFYGSNQFLDYGNNELKLETVDMKGGFKSKETDNIAKKVDMYTIQQYPYKEGEMDVDSIDSSPIKSEVIVKETFSFYEKYGDYLNEELKLEPVDFKEPLKYGKKDIPAEHLVIYSTPIQQYACNECNFTTMEKNSLIKHLRIHIDNNYTCKECDYKTLWKHSLKEHMNIHTGDKYICMECDYKTVRKCNLRQHVKIHMGDKHSCKQCGYKTLWKSNLKKHMKIHMGDKYTCKECDYKTWWKSSLKEHMNIHTGDKYFCKECDYKTVWKGYLREHMKIHIGDKYTCNECNYKTEHMNIHTGDEYICMECDYKTARKGYLREHMKIHIGDKYTCKKCDYKTVSISYLRQHVKIHMDDKYTCKECDYKTVRKYSLKEHMNIHTGQRHICNECHYKTVSKSSLRYHMKSHMGDKYTCKECDYKTSWKNSLKEHMNIHTGDEYMCKACDYKTVRKAYLREHMKIHIVYISFKMPETLCVVCGVHKEEAEKMHNFPRNLEKLWDELISEPVDMEEGFNSKEEDNIAKQVDVYAFPIQQYPNKEGEMDVDSIDSTPIKSEVIVKETFSFCEKYGDYLNEELKSEPVNFEEPLKYGKKDNPAEHLDIYSTPIKQYACNECNFTTMEKNSLIKHLKIHVRDKYTCKECDYKTVWKSYLRQHVKIHMGDKYTCKECVYKTSWKNSLKEHMNIHTGAKYICKDCDYKTVRKCNLSQHLKIHMGDKYTCKECDYKTLWKNSLNEHMNIHTGDEYICKECDYKTVRKGNLREHMKIHIGDKYTCKECDYKTSWKGNLRQHVKIHMDDKYTCKECDFKTVRKNSLKEHMNIHTGDEYICSECGYKSMRKGTLRQHVKIHMDDYGNDELKLEPLDMVEGFKSKEKDNIAKQVDVYAFPIQQYPYKEGEMDVDSIDSSPIKSEVIVKETFSFCEKYEDYPNEELKSQPADFEEPLTYEKKDNPAEHLHMYSTPLQQYACNECNFRTMEKVSLIEHFKIHIGDKYTCKECDYKTLWKNSLKEHMNIHTGEEYICKECDYKTVWKSNLRQHVKIHMDDTYTCKERNYETLRKHSLKEHMKIHTGEQYICNECHYKTMSKGSLREHLKIHMGDKYTCKECDYKTVTKSNLKKHVKIHMGDKYTCKECDYKTLWKNSLNEHMNIHTGVTYFCKECDYKTVRKGNLRDHMKIHIGDKYPCKECDYKTVSKSNLRKHMKIHMGDKYTCKVCDYKTLWKNSLKVHMNIHTGVTFFCKECDYKTVRKCNLTQHVKIHVGDKYTCKECDYKTVWKYNLTQHVKIHMNDKYTCKECDYKTVRKHSLKEHMNIHTGERYICNECHYKTVSKGTLREHLKNHMEKKYTCKECDYKTVRVGSLRQHLKIHMDDKYTCRECDFKTAWKHSLKQHMNIHTGDEYICNECGYKSITKTTLRQHLKIHIESCVISASESLIIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -