Lyun003813.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000602.1:252575-285092[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 34 0.52 7.3 7.4 0.2 1 21 151 171 151 172 0.94
2 34 5.9e-05 0.00083 19.8 1.6 1 23 178 200 178 200 0.98
3 34 9.9e-05 0.0014 19.1 2.8 1 23 205 227 205 227 0.98
4 34 0.0081 0.11 13.1 1.8 1 23 232 254 232 254 0.99
5 34 0.0026 0.037 14.6 0.8 1 23 259 281 259 281 0.99
6 34 0.00094 0.013 16.0 1.4 1 23 286 308 286 308 0.99
7 34 0.00055 0.0078 16.7 1.7 1 23 313 335 313 335 0.99
8 34 6.5 91 3.9 1.5 1 23 340 362 340 362 0.89
9 34 7.5 1.1e+02 3.7 2.8 1 19 367 385 367 389 0.88
10 34 1.6e-05 0.00023 21.6 1.6 1 23 394 416 394 416 0.99
11 34 0.046 0.65 10.7 2.4 1 23 421 443 421 443 0.98
12 34 0.0012 0.017 15.7 1.4 1 23 448 470 448 470 0.99
13 34 0.0032 0.045 14.3 3.1 1 23 475 497 475 497 0.99
14 34 5 71 4.3 1.0 1 19 502 520 502 524 0.84
15 34 1.6e-05 0.00023 21.5 1.5 1 23 529 551 529 551 0.99
16 34 4.7 67 4.4 1.7 1 23 556 578 556 578 0.89
17 34 0.17 2.4 8.9 2.5 1 23 583 605 583 605 0.98
18 34 1.6e-05 0.00022 21.6 0.9 1 23 610 632 610 632 0.99
19 34 0.023 0.33 11.6 2.3 1 23 637 659 637 659 0.98
20 34 0.0001 0.0014 19.1 1.9 1 23 664 686 664 686 0.99
21 34 0.48 6.8 7.5 0.9 1 23 691 713 691 713 0.97
22 34 0.034 0.48 11.1 1.8 1 23 906 928 906 928 0.97
23 34 0.00035 0.0049 17.4 1.0 1 23 933 955 933 955 0.98
24 34 0.042 0.59 10.8 2.0 1 23 960 982 960 982 0.98
25 34 0.0018 0.025 15.1 1.7 1 23 987 1009 987 1009 0.91
26 34 0.079 1.1 9.9 1.3 1 23 1014 1036 1014 1036 0.98
27 34 9.5e-05 0.0013 19.1 2.3 1 23 1041 1063 1041 1063 0.99
28 34 3e-05 0.00042 20.7 1.0 1 23 1068 1090 1068 1090 0.98
29 34 0.016 0.22 12.2 2.5 1 23 1095 1117 1095 1117 0.98
30 34 0.00025 0.0036 17.8 2.3 1 23 1122 1144 1122 1144 0.99
31 34 0.016 0.22 12.2 2.5 1 23 1149 1171 1149 1171 0.98
32 34 2.6e-05 0.00037 20.9 0.7 1 23 1176 1198 1176 1198 0.98
33 34 2.7e-05 0.00039 20.8 1.6 1 23 1203 1225 1203 1225 0.99
34 34 3.7e-05 0.00052 20.4 1.4 1 23 1230 1252 1230 1252 0.99

Sequence Information

Coding Sequence
ATGGATATCAACTCGGTAgactttattgaaagttgtgctataaaatcagaagtaattttaacggaaacattttctttttgtgagaAATATAAAGattGTGGGAGTAAGGAACTGAAACCAGAGCTAGTAGATTACAAAGAATCGCTTCAAAAAGAAGATAATGATCTAGCAGAACCCATAGATACATGTGCTACTCCAATGCAAACAGATGTTTGTAACgactataattttataacaattggaGAAAACTCCCAGAGATATCTTGTGAAAGCTTCCAAAAGCATTAAATATtcttgtaaggaatgtaactttacaaccGAATTAGAATGTTCTATAAATGAGCATACGAAGATTCACAATGATGGATACaatattgaagaatgtaattttaagacgcCACAAATTTTCTCTCTATCGCCACAGTTGAATATTCCATCAAGTGGGAGTGAAtatgtttgtaatgaatgtaattacaccacattgaatgaaaattatttagagAGACATGTGAAGATTACCCAAAGTGCTACATATAGTTGcgagaaatgtgattataaaacagcgaggaaaagtaatctaaagcaacatgttaaaattcatactggtgatgaatatgagtgtaaagaatgtgattataaaacagtacacaaaagtaatctaaagcaacatgtcaaaattcatagtggtgacaaatatacatgtaaagagtgtgattataatacagtgtggaaaagtcatctaaaggaacatatcaaaattcatagtggtgatgaatataagtgtaaagaatgtgattataaatcagtatggaaaagtaatctaatgcaacatatcaaaattcatacaggtcacgaatataagtgtaatgaatgtaattataaaacagtacagagaAGTAATATaatgaaacatgtcaaaattcatagtggtgatgaatataagtgtaacgaatgtaattataaaacagtacagagaAGTAATATAAtgaaacatctcaaaattcatactggtgacaaatatacgtgtaaagagtgtgattataaaacattatggaAAAGTCGTCtgaagcaacatgtcaaaattcatactgatgacAAATATacgtgtaaagagtgtgattataaaacggtatggaaaagttgtctaaaggaacatgacaaaattcatactggtgacaaatatacttgtaaagaatgtgattataaaacaatatcaaaaagtaatctaaaacaacatatcaaaattcatacaggtgacgcatataagtgtaatgaatgtaattataaaacattacaGAGAAGTAATATAATGAAACATGTCAAAACtcatagtggtgatgaatataagtgtaatgaatgtaattataaaacaatacagaGAAGTAATATaatgaaacatgtcaaaattcatagtggtgatgaatataagtgtaatgaatgtaattataaaacagtacatagAAGTAATATaatgaaacatgtcaaaattcatactaatGACAAATATacgtgtaaagagtgtgattataaaacggtatggaaaagtcgtctaaaggaacatgacaaaattcatactggtgacaaatatacctgtaaagaatgtgattataaaacaatatcaaaaagtaatctaagacaacatatcaaaattcatacaggtgatcaatataagtgtaaagagtgtgattataaaacgttaTGGAAAAGtcgtctaaagcaacatgtcaaaattcatactggtgacaaatatacatgtaaagagtgtgattataaaacggtatggaaaagttgtctaaaggaacatgtcaaaattcatactggtgacaaatatacgtgtgaagaatgtgattataaaacaatatcgaaaagtaatctaaaacaacatatcaaaattcatacaggtgaccaatttaagtgtaaagagtgtgattataaaacggtatggaaaagtcatctaacggaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacagtgcggaaatggcaactaaagaaacatgtcaaaattcatactggtggcAAATATacgtgtaatgaatgtgattatagaacagtgtggaaaaaacgcctaatgcaacatgtcaaaattcatacaggtgtcgAGATTGATaacatcgaattagatgatgttttatgtcgacacattcgacgaattgttagtcgttttcatgagcatggtagtgtttgcaagggaaaatctacaggtcgcacaactgtacttacagaggaagtagtggaagatgtaTGTACACATTTGGAAAGAAGTCCGACAAAACCTTTAAGGCAACCTCCTTTGGCCCAGCAAAcagatTGTGAGAGTAAGGAACTGAAACAGGAGTTAGTAGATTTTGAAGAATCGCTTCAacctaaagaagaaaatgatctaGCAGAACCCATAGATACACATGCTACTCCGAAGCAAAGAGATTTTTGTAATGACTATAATTTTACAACAATTGGAGAAAATTCGCTAGTAGAACTTTTGAAAGTTCCTAAAAGCGTTAAATACTCTTGTAGAGAATGTGACTTTACAACCCATTTAGAATTTTCGATAAAAGACCATACGAGCATTCACAATGATGgatataatattgaagaatgtaattttaagacgcCACAGATTTTCTCTTTATCACCACagttgaaaattcaaaaatgtgagaatgaatatgtttgtaatgaatgtaattacaccacattgaacaaaaatgatttaaagaGACATGTGAAATTTCACAAAAGTGCTACATATAGTTGCGAGAAATGTGATTATATAACAGTGAGGAAAAGTTATCTAaggcaacatgtaaaaattcatactggtgacaaacataagtgtaaagaatgcgattataaaacagtatggaaaagtaatctattgcaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattatacaaCAGTTCAGAAAACTAATCTAAGGCAACATGACAAAGTTCATACTAGTGACAAATAtatgtgtaaagagtgtgactataaaacggtatggaaaggtcatctaaaggaacatgtcaaaattcatactggtgatgagtataagtgtaaaaaatgtgattataaatcagtacggaaaagtaatctaatgcaacatgtcaaaattcatactggtgataaatatatgtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatatcaaaattcatactggtgacaaatataagtgtaaagagtgtgattataaaacggtatggaaaagtcatctaaaggaacatgtcaaaattcatactggtgacgaatataagtgtaaagagtgtaattataaaacagtacagaaaagttatctaacgcaacatgtcaaaattcatactggcgacaaatataagtgtaaagagtgtgattataaaacagtatggaaaagtcatctaaaggaacatgttaaaattcatactggtgacgaatataagtgtaatgaatgtggttataaatcagtacggaaaagtaatctaatggaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataagacagtacagaaaagtaatctaacacaacatgtcaaaattcatactggtgacaaatataagtgtaaagagtgtgattataaaaccgtacagaaaagtaatctaatgcaacatgtcaaagttcatactggtgacgaatataagtgtaagaatgtgattataaaacagtatggaaaagtaatctaa
Protein Sequence
MDINSVDFIESCAIKSEVILTETFSFCEKYKDCGSKELKPELVDYKESLQKEDNDLAEPIDTCATPMQTDVCNDYNFITIGENSQRYLVKASKSIKYSCKECNFTTELECSINEHTKIHNDGYNIEECNFKTPQIFSLSPQLNIPSSGSEYVCNECNYTTLNENYLERHVKITQSATYSCEKCDYKTARKSNLKQHVKIHTGDEYECKECDYKTVHKSNLKQHVKIHSGDKYTCKECDYNTVWKSHLKEHIKIHSGDEYKCKECDYKSVWKSNLMQHIKIHTGHEYKCNECNYKTVQRSNIMKHVKIHSGDEYKCNECNYKTVQRSNIMKHLKIHTGDKYTCKECDYKTLWKSRLKQHVKIHTDDKYTCKECDYKTVWKSCLKEHDKIHTGDKYTCKECDYKTISKSNLKQHIKIHTGDAYKCNECNYKTLQRSNIMKHVKTHSGDEYKCNECNYKTIQRSNIMKHVKIHSGDEYKCNECNYKTVHRSNIMKHVKIHTNDKYTCKECDYKTVWKSRLKEHDKIHTGDKYTCKECDYKTISKSNLRQHIKIHTGDQYKCKECDYKTLWKSRLKQHVKIHTGDKYTCKECDYKTVWKSCLKEHVKIHTGDKYTCEECDYKTISKSNLKQHIKIHTGDQFKCKECDYKTVWKSHLTEHVKIHTGDEYKCKECDYKTVRKWQLKKHVKIHTGGKYTCNECDYRTVWKKRLMQHVKIHTGVEIDNIELDDVLCRHIRRIVSRFHEHGSVCKGKSTGRTTVLTEEVVEDVCTHLERSPTKPLRQPPLAQQTDCESKELKQELVDFEESLQPKEENDLAEPIDTHATPKQRDFCNDYNFTTIGENSLVELLKVPKSVKYSCRECDFTTHLEFSIKDHTSIHNDGYNIEECNFKTPQIFSLSPQLKIQKCENEYVCNECNYTTLNKNDLKRHVKFHKSATYSCEKCDYITVRKSYLRQHVKIHTGDKHKCKECDYKTVWKSNLLQHVKIHTGDEYKCKECDYTTVQKTNLRQHDKVHTSDKYMCKECDYKTVWKGHLKEHVKIHTGDEYKCKKCDYKSVRKSNLMQHVKIHTGDKYMCKECDYKTVQKSNLMQHIKIHTGDKYKCKECDYKTVWKSHLKEHVKIHTGDEYKCKECNYKTVQKSYLTQHVKIHTGDKYKCKECDYKTVWKSHLKEHVKIHTGDEYKCNECGYKSVRKSNLMEHVKIHTGDEYKCKECDYKTVQKSNLTQHVKIHTGDKYKCKECDYKTVQKSNLMQHVKVHTGDEYKCKNVIIKQYGKVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-