Lyun014685.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002108.1:4984698-4987398[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 4.5e-05 0.00064 20.1 2.5 1 23 46 68 46 68 0.99
2 31 0.036 0.5 11.0 3.6 1 23 73 95 73 95 0.99
3 31 0.1 1.4 9.6 1.1 1 23 100 122 100 122 0.98
4 31 3.2 46 4.9 0.9 1 23 127 149 127 149 0.88
5 31 0.013 0.18 12.4 0.8 1 23 154 176 154 176 0.98
6 31 0.012 0.18 12.5 0.8 1 23 181 203 181 203 0.98
7 31 9.4e-05 0.0013 19.1 1.4 1 23 208 230 208 230 0.99
8 31 0.035 0.49 11.1 2.8 1 23 235 257 235 257 0.98
9 31 0.21 2.9 8.6 1.3 1 23 262 284 262 284 0.97
10 31 0.00067 0.0094 16.5 3.2 1 23 289 311 289 311 0.99
11 31 0.0013 0.019 15.5 1.4 1 23 316 338 316 338 0.99
12 31 3.1e-05 0.00044 20.7 2.4 1 23 343 365 343 365 0.99
13 31 5e-05 0.00071 20.0 1.6 1 23 370 392 370 392 0.99
14 31 3.7e-05 0.00052 20.4 1.3 1 23 397 419 397 419 0.99
15 31 0.0048 0.068 13.8 1.1 1 23 424 446 424 446 0.99
16 31 1.6e-05 0.00023 21.6 1.7 1 23 451 473 451 473 0.99
17 31 0.07 0.99 10.1 0.8 1 23 478 500 478 500 0.98
18 31 0.0032 0.045 14.3 1.5 1 23 505 527 505 527 0.99
19 31 0.062 0.88 10.3 0.8 1 23 532 554 532 554 0.98
20 31 9.4e-05 0.0013 19.1 1.4 1 23 559 581 559 581 0.99
21 31 0.0032 0.045 14.3 4.1 1 23 586 608 586 608 0.99
22 31 0.21 2.9 8.6 1.3 1 23 613 635 613 635 0.97
23 31 0.00067 0.0094 16.5 3.2 1 23 640 662 640 662 0.99
24 31 0.0043 0.061 13.9 1.4 1 23 667 689 667 689 0.99
25 31 5e-05 0.0007 20.0 1.7 1 23 694 716 694 716 0.99
26 31 0.00014 0.002 18.6 1.0 1 23 721 743 721 743 0.99
27 31 3.7e-05 0.00052 20.4 1.3 1 23 748 770 748 770 0.99
28 31 0.00031 0.0044 17.5 1.1 1 23 775 797 775 797 0.99
29 31 0.0065 0.092 13.4 2.8 1 23 802 824 802 824 0.98
30 31 0.03 0.43 11.3 1.6 1 23 829 851 829 851 0.98
31 31 0.034 0.48 11.1 2.5 1 23 856 878 856 878 0.98

Sequence Information

Coding Sequence
ATGTTTAGGATGGATATTAATTCTACTAAAAGTTGTATAAAATCggaaattattttaacagaaacattttgtgAAAACTATGAAGATTGTGGTAATGAAGAACTGAAAACGGAGTCAGTAGATTGCAAAGAATTgtttaagtgtaaagagtgtgattataaaacagtgcggaaaagtagtctaaattcacatgtcaaaactcatacaggtgataaatataagtgtaaagaatgtaattataaaacagtgtgtaATAGTAGTCTAAAGGaccatatcaaaattcataaaggtgacaaatatacgtgtaatgaatgtgattttaaaacatcgTGGAGACGTAGTCTAAAGgaccatgtcaaaattcataaaggtgacaaatatacgtgtaacgaatgtgactataaaacattgtggaaaCGTAGTCTAAAGgaccatgtcaaaattcatacaggtgaggaatatacatgtaaagagtgtgattataaaacagtgtggaagaGTAGTCTAAAGgaccatgtcaaaattcatacaggtgaggaatatacatgtaaagagtgtgattataaaacagtgtggaagagtagtctaaaggaacatgtcaaaattcatacaggtgaggaatatacatgtaaagaatgtgattataaaacagtgcggaaaggtAGTCTAAATTCACATGTCAAaactcatacaggtgataaatataagtgtaaagagtgtgattataaaacagtgcggaaacatattctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagactgtgattataaaacactgtggaaaagtagtctaaatatacatgtcaaaactcatacaggtgatgaatataagtgtaaagagtgtgattataaaacggtgagGAAACATCTTCTAaaggatcatgtcaaaattcatacaggtgaggaatataggtgtaaagactgtgattataaaacagtgtggaaaagtagtCTAAATTCACATATCAaaactcatacaggtgatgaatataagtgtaaagagtgtgattataaaacagtgcggaaaagtagtctaaattcacatgtcaaaactcatacaggtgatgaatataagtgtaaagagtgtgattataaaacagtgcggaaaagtagtctaaaggaacatgtcaaaattcatacaggtgaggaatatacgtgtgaagaatgtgattataaaacagtgcggaaaagtAGTCTAAATTCACATGTTAaaactcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaagtagtctaaaggaacatttaaaaattcatacaggggaGGAATATacgtgtaaagagtgtgattataaaacagtgcggaaaagtAGTCTGAAGGCACATGTCAaaactcatacaggtgatgaatataagtgtaaagagtgtgattacaaaacagtgtggaaacagcttctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagactgtgattataaaacagtgtggaaaagtagtctaaattcacatgtcaaaactcatacaggtgataaatataagtgtaaagagtgtgattataaaacagtgtggaaaaatcttctaaaggaacatgtcaaaattcatacaggtgaggaatatacgtgtaaagaatgtgattataaaacagtgcggaaaggtAGTCTAAATTCACATGTCAAaactcatacaggtgataaatataagtgtaaagagtgtgattataaaacagtccGGAAACAttttctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagactgtgattataaaacactgtggaaaagtagtctaaatatacatgtcaaaactcatacaggtgatgaatataagtgtaaagagtgtgattataaaacggtgagGAAACATCTTCTAaaggatcatgtcaaaattcatacaggtgaggaatataggtgtaaagactgtgattataaaacagtgtggaaaagtagtctaaattcacatgtcaaaactcatacaggtgatgaatataagtgtaaagagtgtgattataaaacagtgcggaaaagtAGCTTAAAttcacatgtaaaaattcatgcaggtgatgaatataagtgtaaagagtgtgattacaaaacagtacgggaaagtagtctaaaggaccatgtcaaaattcatacaggtgaggaatatacgtgtgaagaatgtgattataaaacagtgcggaaaagtAGTCTAAATTCACATGTTAaaactcatacaggtgatgaatataagtgtaatgaatgtgactataaaacagtaaggaaaaatcttctaaaggaccatgttaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacattgcagAAATATAGTCTAaggaaacatgtcaaaattcatactggtgaggaatataagtgtgaagattgtgattataaaacagtgtggaaaaatcatctaagggaacatgtcaaaattcatacaggtgagaaatataagtgtagagaatgtgattataaaacattgcagGAGTATAGTCTAAGGAAACATGTCAAAACTCATATAGGTGACTAG
Protein Sequence
MFRMDINSTKSCIKSEIILTETFCENYEDCGNEELKTESVDCKELFKCKECDYKTVRKSSLNSHVKTHTGDKYKCKECNYKTVCNSSLKDHIKIHKGDKYTCNECDFKTSWRRSLKDHVKIHKGDKYTCNECDYKTLWKRSLKDHVKIHTGEEYTCKECDYKTVWKSSLKDHVKIHTGEEYTCKECDYKTVWKSSLKEHVKIHTGEEYTCKECDYKTVRKGSLNSHVKTHTGDKYKCKECDYKTVRKHILKEHVKIHTGEEYKCKDCDYKTLWKSSLNIHVKTHTGDEYKCKECDYKTVRKHLLKDHVKIHTGEEYRCKDCDYKTVWKSSLNSHIKTHTGDEYKCKECDYKTVRKSSLNSHVKTHTGDEYKCKECDYKTVRKSSLKEHVKIHTGEEYTCEECDYKTVRKSSLNSHVKTHTGDEYKCKECDYKTVWKSSLKEHLKIHTGEEYTCKECDYKTVRKSSLKAHVKTHTGDEYKCKECDYKTVWKQLLKEHVKIHTGEEYKCKDCDYKTVWKSSLNSHVKTHTGDKYKCKECDYKTVWKNLLKEHVKIHTGEEYTCKECDYKTVRKGSLNSHVKTHTGDKYKCKECDYKTVRKHFLKEHVKIHTGEEYKCKDCDYKTLWKSSLNIHVKTHTGDEYKCKECDYKTVRKHLLKDHVKIHTGEEYRCKDCDYKTVWKSSLNSHVKTHTGDEYKCKECDYKTVRKSSLNSHVKIHAGDEYKCKECDYKTVRESSLKDHVKIHTGEEYTCEECDYKTVRKSSLNSHVKTHTGDEYKCNECDYKTVRKNLLKDHVKIHTGEEYKCKECDYKTLQKYSLRKHVKIHTGEEYKCEDCDYKTVWKNHLREHVKIHTGEKYKCRECDYKTLQEYSLRKHVKTHIGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-