Lyun007075.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:2157986-2166892[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 44 0.077 1.1 10.0 0.1 1 21 66 86 66 87 0.96
2 44 0.72 10 6.9 0.5 5 23 138 156 137 156 0.95
3 44 0.00094 0.013 16.0 0.9 1 23 161 183 161 183 0.99
4 44 0.00022 0.0031 18.0 3.1 1 23 188 210 188 210 0.98
5 44 0.43 6.1 7.6 1.7 3 23 215 237 214 237 0.94
6 44 0.0092 0.13 12.9 3.6 1 23 242 264 242 264 0.99
7 44 0.071 1 10.1 0.6 1 23 269 291 269 291 0.98
8 44 0.49 7 7.4 0.6 1 23 296 318 296 318 0.96
9 44 0.00018 0.0026 18.3 2.1 1 23 323 345 323 345 0.99
10 44 1.4 19 6.0 2.5 1 23 350 372 350 372 0.98
11 44 0.00016 0.0023 18.4 4.4 1 23 377 399 377 399 0.99
12 44 0.00017 0.0024 18.3 0.9 1 23 404 426 404 426 0.99
13 44 0.0092 0.13 12.9 3.6 1 23 432 454 432 454 0.99
14 44 0.11 1.6 9.5 0.3 1 23 459 481 459 481 0.98
15 44 0.023 0.32 11.6 0.6 1 23 486 508 486 508 0.98
16 44 0.13 1.8 9.3 0.8 1 23 513 535 513 535 0.98
17 44 7.4 1e+02 3.7 4.6 1 23 540 562 540 562 0.98
18 44 0.16 2.2 9.0 2.2 1 23 567 589 567 589 0.99
19 44 0.00017 0.0024 18.3 0.9 1 23 594 616 594 616 0.99
20 44 0.0092 0.13 12.9 3.6 1 23 622 644 622 644 0.99
21 44 0.024 0.34 11.6 0.6 1 23 649 671 649 671 0.98
22 44 0.023 0.32 11.6 0.6 1 23 676 698 676 698 0.98
23 44 0.13 1.8 9.3 0.8 1 23 703 725 703 725 0.98
24 44 7.4 1e+02 3.7 4.6 1 23 730 752 730 752 0.98
25 44 0.16 2.2 9.0 2.2 1 23 757 779 757 779 0.99
26 44 0.00025 0.0036 17.8 1.0 1 23 784 806 784 806 0.99
27 44 0.00026 0.0037 17.7 2.8 1 23 812 834 812 834 0.98
28 44 0.16 2.2 9.0 0.0 1 21 950 970 950 971 0.95
29 44 1.1 15 6.4 0.3 5 23 1030 1048 1028 1048 0.96
30 44 0.83 12 6.7 1.6 1 23 1053 1075 1053 1075 0.98
31 44 0.039 0.55 10.9 1.1 1 23 1080 1102 1080 1102 0.98
32 44 0.0023 0.033 14.8 2.7 1 23 1107 1129 1107 1129 0.98
33 44 0.00091 0.013 16.0 6.2 1 23 1134 1156 1134 1156 0.98
34 44 0.014 0.19 12.4 1.0 1 23 1161 1183 1161 1183 0.99
35 44 0.00035 0.0049 17.4 3.1 1 23 1188 1210 1188 1210 0.99
36 44 0.014 0.19 12.4 1.0 1 23 1215 1237 1215 1237 0.99
37 44 0.0078 0.11 13.1 1.5 1 23 1242 1264 1242 1264 0.98
38 44 0.00016 0.0022 18.4 2.7 1 23 1269 1291 1269 1291 0.99
39 44 0.00054 0.0076 16.8 4.8 1 23 1296 1318 1296 1318 0.99
40 44 0.0034 0.048 14.3 2.4 1 23 1323 1345 1323 1345 0.99
41 44 0.04 0.56 10.9 0.9 1 23 1350 1372 1350 1372 0.98
42 44 0.0016 0.022 15.3 6.6 1 23 1377 1399 1377 1399 0.98
43 44 0.074 1 10.0 3.3 1 23 1404 1426 1404 1426 0.99
44 44 0.00027 0.0038 17.7 3.8 1 23 1431 1453 1431 1453 0.99

Sequence Information

Coding Sequence
ATGGACGCCGTATATAATGAAAGTTACccaataaaatcagaagtgattgTAAGTGAAACATTTTCCTATTGTGAAAAATTTGGAGattatggGAATGAAGAATTGAAAACGGAACCTGTAGATTttgaagaatcttttaaatgcaaagAAGATAATGTGGAAGAGCACACCTCCCAAAGTTTACCTGTCCAACAATATGTTTGTAACGAATGTCATTTTATTGCAACCGAGAAAGATTCTTTAATAGAACATATGAAAGTTAccgaaaatgaatatttttgcaaggaatgtaattttacaacacGGTTAGAATGTTCTATAAAACAGCATTTCAAGATTCATAAAAGGGTTGATTGTAAACAGATCACTAAAAAACATAACTCTAAGACCTCACATTTGAAAAGtggtaacgaatgtgattacaaaactaGGCAGAAATGGAGTATGAAGAAGCATgagaaaattcatactgatagTGAATACAAATGTCAGggatgtgattataaaacaatatcaaaatatagGCTAATAGTacacatgaaaattcatactggtgataaatataactGTAAGgtgtgtgattataaaacaatacgaaAACATGATCTAATGCGacacatgaaaattcatacaggtaatgaatgtAAGcataaggaatgtgattataaaacaatatcgaAACAGGATCTAAAAGAACATGCAAAAGTTCATACTGGTGAACAatacaagtgtaaggaatgtgattataaaacaatacgaaAACACAGGTTAAcagaacatgtaaaaattcatactggtgatcaatataagtgtaaggaatgtgattataaaacagcgtggAAACGGAGTCTACAGGAACATGTGAACATTCATACTAATggggaatataagtgtaaagaatgtgattataaaacagcatggaaacGGAATATACGGGAACATGTGAACATTCATACTAATgtggaatataagtgtaaagaatgtgattataaaacagctaCGAAACGGAGTCTAAAGGTACATGTGAAAactcatactggtgatgaatataagtgtaaggaatgttattataaaacaatatggaaacaacGTCTAACacaacatatgaaaattcacactggtgatgaatataagtgtaaagaatgcgattataaaacaatacgaaAACATTCTTTGACAcaacacatgaaaattcatactggtgatgaatataagtgctctgagtgtaattataaaacagtaaggaAAGATTCTCTCGTGcaacacataaaaattcattctggtgataaaaaatataagtgcaaggaatgtgattataaaactatacgAAAACACAGGTTAacggaacatgtaaaaattcataatggtggtcaatataagtgtaaggaatgtgattatgaaacagCATGGAAACGGAGTCTACAGGAACATGTGAACATTCATACTAATggggaatataagtgtaaagaatgtgattataaaacagcgtggAAACGGAATCTACAGGAACATGTGAACGTTCATACTAATgtagaatataagtgtaaagaatgtgattataaaacagcttGGAAACGGAGTCTAGAGGGACATGTGAAAactcatactggtgatgaatataagtgtaagcaatgttattataaaacaatatggaagcAATGTCTAACAGAacacatgaaaattcacactggtgatgaatataagtgtaaggaatgttattataaaacaatatggaaacaaagtctaacacaacacatgaaaattcatactggtgatgaatataagtgctctgagtgtaattataaaacagtaaggaAAGATTCTCTCGTGcaacacataaaaattcattctggtgataaaaaatataagtgcaaggaatgtgattataaaactatacgAAAACACAGGTTAacggaacatgtaaaaattcataatggtggtcaatataagtgtaaggaatgtgattataaaacagcgtggAAACGGAATCTACAGGAACATGTGAACATTCATACTAATggggaatataagtgtaaagaatgtgattataaaacagcgtggAAACGGAATCTACAGGAACATGTGAACGTTCATACTAATgtagaatataagtgtaaagaatgtgattataaaacagcttGGAAACGGAGTCTAGAGGGACATGTGAAAactcatactggtgatgaatataagtgtaagcaatgttattataaaacaatatggaagcAATGTCTAACAGAacacatgaaaattcacactggtgatgaatataagtgtaaggaatgttattataaaacaatatggaaacaaagtctaacacaacacatgaaaattcatactggtgatgaatataagtgctctgagtgtaattataaaacagtacggaaagATACTCTCGTGcaacacataaaaattcataccggtgataaaaaatataagtgtaaggagtgtgattttaaaacaatacgaaaaaaaaatctaacgcAACACATAAAACTTCATAGTAACTTTGAAGTAGAGAAAAAAATGGACACATTCCTatcaaaatcaaattttgatttcaacGAATCTAAAATCTACTTCTATTTGGTGGTGGTAATAATAAggattttaaatacaaaaagtcATAATGAAAGCATAGtttctatAATGGACGTCATATATGATGACAGTTACccaataaaatcagaagtaattGTACACGAAACATTTTCccattgtggaaaatatgaagACTATGTGaatgaagaattgaaaacaGACCCGGTAGATTttgaagaatcttttaaatacaaaaatgaagataatCTTGAAGAGCACACCTCACAAAGTATACCCGTACATCAATATATTTGTaacgaatgtaattttattgcaacagagaaagattctctaatagaacatatgaaaattactaagaataaatatttttgcaaggaatgtaactttacaacccTGTTAAAATGTTCTATAGAGCAGCATTTCAGGATTCATAGCAGGGTTGACTGTATACAGATCACTAAAAAACATAACTGTAAGATGTCACAAATCTTAACACCATGTTTGAAAACTCCAAGAAGTGGTGacgaatgtgattacaaaacaccaCAGAAATGGTGTATGAAGAAACATGTAAGAAGTCATACTGGTGATCAATATAAGTGTACCaagtgtgattttaaaacaatatggaaaggGAATTTCAAGGAACATGAGAAAATTCATAGTGATAgtgaatacaagtgtaaggaatgtaattataaaacaccgtggaaacagaatctaaagaaacatgtggAAATTCATACTAGTAGGGAATATAattgtaaggaatgtgattacaaaaccgTACGGAAACATAGTCTAAcagaacatgtaaaaattcatacaggtgatgaacataagtgtaatgaatgtgattataaaactacaCGGAAACATAGTCTAACACTacacatgaaaattcacactggtgatgaatataagtgcaacgaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaattcatagtgatgatgaatataagtgtaaggagtgtgattataaaacaatacacaaaaaaaatctagtgcaacacataaaaattcatattggtgatgaatataagtgcaacgaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaattcatactggcgaacaatataagtgtaaggaatgtgattataaaacaatacgaaAACAAAGACTAatggaacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattacaaaacagtacaGAAACATAATCTAGTGcaacacataaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaatacggaaacataattttacgcaacacataaaaattcatattggtgatgaatataagtgtaaggagtgtgattataaaacaatacagaaACATAATATTGTGcaacacataaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaatatggaaacagaatctaacggatcatgtgaaaattcatactgacaatgaacataagtgtaatgaatgtgattataaaactacaCGGAAACACTATCTAACACTacacatgaaaattcatactggtgatgaatataagtgtaaggaatgtgactataaaacaatatggaaacataATGTAAAGCAACACATGAAAATTCAcattggtgatgaatataagtgtaaagaatgcgattataaaacaatacaaaaacattCTCTGATGcaacacatgaaaattcatactggtgatgaataa
Protein Sequence
MDAVYNESYPIKSEVIVSETFSYCEKFGDYGNEELKTEPVDFEESFKCKEDNVEEHTSQSLPVQQYVCNECHFIATEKDSLIEHMKVTENEYFCKECNFTTRLECSIKQHFKIHKRVDCKQITKKHNSKTSHLKSGNECDYKTRQKWSMKKHEKIHTDSEYKCQGCDYKTISKYRLIVHMKIHTGDKYNCKVCDYKTIRKHDLMRHMKIHTGNECKHKECDYKTISKQDLKEHAKVHTGEQYKCKECDYKTIRKHRLTEHVKIHTGDQYKCKECDYKTAWKRSLQEHVNIHTNGEYKCKECDYKTAWKRNIREHVNIHTNVEYKCKECDYKTATKRSLKVHVKTHTGDEYKCKECYYKTIWKQRLTQHMKIHTGDEYKCKECDYKTIRKHSLTQHMKIHTGDEYKCSECNYKTVRKDSLVQHIKIHSGDKKYKCKECDYKTIRKHRLTEHVKIHNGGQYKCKECDYETAWKRSLQEHVNIHTNGEYKCKECDYKTAWKRNLQEHVNVHTNVEYKCKECDYKTAWKRSLEGHVKTHTGDEYKCKQCYYKTIWKQCLTEHMKIHTGDEYKCKECYYKTIWKQSLTQHMKIHTGDEYKCSECNYKTVRKDSLVQHIKIHSGDKKYKCKECDYKTIRKHRLTEHVKIHNGGQYKCKECDYKTAWKRNLQEHVNIHTNGEYKCKECDYKTAWKRNLQEHVNVHTNVEYKCKECDYKTAWKRSLEGHVKTHTGDEYKCKQCYYKTIWKQCLTEHMKIHTGDEYKCKECYYKTIWKQSLTQHMKIHTGDEYKCSECNYKTVRKDTLVQHIKIHTGDKKYKCKECDFKTIRKKNLTQHIKLHSNFEVEKKMDTFLSKSNFDFNESKIYFYLVVVIIRILNTKSHNESIVSIMDVIYDDSYPIKSEVIVHETFSHCGKYEDYVNEELKTDPVDFEESFKYKNEDNLEEHTSQSIPVHQYICNECNFIATEKDSLIEHMKITKNKYFCKECNFTTLLKCSIEQHFRIHSRVDCIQITKKHNCKMSQILTPCLKTPRSGDECDYKTPQKWCMKKHVRSHTGDQYKCTKCDFKTIWKGNFKEHEKIHSDSEYKCKECNYKTPWKQNLKKHVEIHTSREYNCKECDYKTVRKHSLTEHVKIHTGDEHKCNECDYKTTRKHSLTLHMKIHTGDEYKCNECDYKTIWKQSLKEHMKIHSDDEYKCKECDYKTIHKKNLVQHIKIHIGDEYKCNECDYKTIWKQSLKEHMKIHTGEQYKCKECDYKTIRKQRLMEHVKIHTGDEYKCKECDYKTVQKHNLVQHIKIHTGDEYKCKECDYKTIRKHNFTQHIKIHIGDEYKCKECDYKTIQKHNIVQHIKIHTGDEYKCKECDYKTIWKQNLTDHVKIHTDNEHKCNECDYKTTRKHYLTLHMKIHTGDEYKCKECDYKTIWKHNVKQHMKIHIGDEYKCKECDYKTIQKHSLMQHMKIHTGDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-