Lyun015808.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002186.1:3483871-3499260[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.0015 0.021 15.4 1.6 1 23 67 89 67 89 0.98
2 30 0.0011 0.015 15.8 1.2 1 23 99 121 99 121 0.99
3 30 0.67 9.4 7.0 1.1 1 23 126 148 126 148 0.96
4 30 0.026 0.37 11.5 1.0 1 23 153 175 153 175 0.98
5 30 3e-05 0.00042 20.7 1.4 1 23 180 202 180 202 0.99
6 30 0.29 4.1 8.2 0.5 1 23 207 229 207 229 0.97
7 30 8.1e-05 0.0012 19.3 1.1 1 23 234 256 234 256 0.99
8 30 0.024 0.34 11.6 0.8 1 23 261 283 261 283 0.98
9 30 0.003 0.042 14.4 1.0 1 23 288 310 288 310 0.99
10 30 0.059 0.83 10.3 0.7 1 23 315 337 315 337 0.98
11 30 0.038 0.54 10.9 0.7 1 23 342 364 342 364 0.98
12 30 3e-05 0.00042 20.7 1.4 1 23 369 391 369 391 0.99
13 30 0.0024 0.033 14.7 0.7 1 23 396 418 396 418 0.99
14 30 8.1e-05 0.0012 19.3 1.1 1 23 423 445 423 445 0.99
15 30 0.024 0.34 11.6 0.8 1 23 450 472 450 472 0.98
16 30 0.003 0.042 14.4 1.0 1 23 477 499 477 499 0.99
17 30 0.059 0.83 10.3 0.7 1 23 504 526 504 526 0.98
18 30 0.00043 0.006 17.1 1.7 1 23 531 553 531 553 0.99
19 30 0.0038 0.054 14.1 0.5 1 23 558 580 558 580 0.99
20 30 0.01 0.14 12.8 0.6 1 23 585 607 585 607 0.99
21 30 0.059 0.83 10.3 0.7 1 23 612 634 612 634 0.98
22 30 0.045 0.63 10.7 4.7 1 23 639 661 639 661 0.98
23 30 9.9e-05 0.0014 19.1 1.5 1 23 666 688 666 688 0.99
24 30 2.9e-05 0.00041 20.8 0.9 1 23 693 715 693 715 0.99
25 30 1.3e-05 0.00018 21.9 0.7 1 23 720 742 720 742 0.99
26 30 0.0039 0.055 14.1 0.7 1 23 747 769 747 769 0.99
27 30 0.0071 0.1 13.2 1.1 1 23 774 796 774 796 0.99
28 30 0.00024 0.0033 17.9 1.7 1 23 801 823 801 823 0.99
29 30 0.011 0.16 12.6 0.5 1 23 828 850 828 850 0.99
30 30 1.8e-05 0.00026 21.4 1.4 1 23 855 877 855 877 0.99

Sequence Information

Coding Sequence
atggatgttgattcaatagcaaattgtgcaataaaatccgAAGTGATTTTAATAGAAACATTTGCATTTTctggaaaatatgaagATTATGGTGAGAGTCAAGAACCAAAAACAGATCTAGCAGTTCATGAAGAATTGTTTAAACGTAAACAAGAAGATTCTGTAGAGCACATAGACGTACACGCTGCTCGCAAtgaatacatttgtaatgaatgtaactatACGACATTCATCAAACGTAATCTAAAgagacatataaaaattcataaaggtggTGACGTTACCAGAGACAAATatcagtgtaaagaatgtgactataaaacagcatggaaaagtagtctaaaaaaacacatcaaaattcatacaggatataaatataagtgtaaagaatgtgattataaaacagtttggagAAATcgactaaaggaacatgtcaaaattcatacaggagatgaatataagtgtaaagaatgtgattataaaacagtgtggagaAATCTACTAAAGCAACACATCAAAGTTCATACAggggatgaatataagtgtaaagaatgtgattataaaaccgtgcggaaaaatcaactaaaggcacatatcaaaattcatacaggtgatgaatataagtgtattgaatgtgattataaaacggtgtggaaatatcaactaaaggcacacatcaaaattcatacaggtgatgaatataagtgtaatgaatgtgattataaaaccgtgcggaaaaatcaactaaaggcacatgtcaaaattcatacaagtaatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatctactaaaggaacacatcaaagtTCATACAggggatgaatataagtgtaaagaatgtgattataaaacagtgcgggaAAATCGACTAAAGGcccatgtcaaaattcatacaggtaatgaatataagtgtaaagaatgtgattttaaagcTGTGTGgaaatatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggagaaatctactaaaggaacacatcaaagtTCATACAggggatgaatataagtgtaaagaatgtgattataaaaccgtgcggaaaaatcaactaaaggcacatatcaaaattcatacaggtgatgaatataagtgtaatgaatgtgattataaaacggtgtggaaatatcaactaaaggcacacatcaaaattcatacaggtgatgaatataagtgtaatgaatgtgattataaaaccgtgcggaaaaatcaactaaaggcacatgtcaaaattcatacaagtaatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatctactaaaggaacacatcaaagtTCATACAggggatgaatataagtgtaaagaatgtgattataaaacagtgcgggaAAATCGACTAAAGGcccatgtcaaaattcatacaggtaatgaatataagtgtaaagaatgtgattttaaagcTGTGTGgaaatatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtgaagaatgtgattacaaaacagtgcaGAAAAATCGCCTCaagaaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaatatGAACTGAAtgcacacatcaaaattcatacgggtgatgaatataagtgtaaagaatgtgattttaaaacagtgtggaaatatGAACTGAAtgcacacatcaaaattcatacgggtgatgaatataagtgtaaagaatgtgattttaaagcTGTGTGgaaatatcaactaaaggaacacatcaaaattcacacaggtgatgaatataagtgtaaagaatgtgattataaaacattgcggAAACATCAACTAAAGGTACACaccaaaattcacacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcagaaaaatcaattaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaatgaatgtgattataaaaccgtgcggaaaaatcaactaaatgctcacatcaaaattcatacaggtgatgaatataagtgtaatgaatgtggttataaaaccgtgcggaaaaatcaactaaatgctcacatcaaaattcatacaggtgataaatataaatgtaaagaatgtgattatacaaCAGCGtggaaaaaatatctaaatgcacacatcaaaattcatgcaggtgatgaatataagtgtaaagattgtgattataaaactgtgtggaaataTCAACTAATGCAGCACGttagaattcatacaggtgatgaatataagtgtaaagaatgtgattacaaaacagtgcaGAAATATCGACTAAAGGcacacattaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggataagtaatctaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaatgaatgtgattacaaaacggTGCAgaaatatcaactaaaggaacacatcagaattcatacagCAGTGCTAACCATACAGTCGTTGAAGAGCACATGCAGTCACATTCATTTACAAGTAGGTACCAATTACCAAATTGTGTCATTGATTAGTACTTGGGTTACTAAAGCTTATATTtacaaggaaaattttaatgaacacATTGTTATAGGTGACTTTTCTGCACTCCAAGGTGTATCGGCACGTTTTGTTGAACATAATGTACATGTGGTAAACTATAACGATAAGGCACCTGAACCTGCATCATTGCAAAGTGCAGAGAAAATTTGGTGTAAAGGTAATGTACTTATGTTAATCGATGCATATAAACAACATGAAGCACAGTttgcaacaacaataaaaaaagttgtttggcAAAAAATTGGCAATGTTTTGTCAGAAAAGGCAAACGTAACAATTACCACACAACAGTGTGACACAAAATGGAAAGGTATGCTCAAgatgtataaacaaataaaagatgcGAATGCAAAGTCGGGCAATAGTCCCAAAAATTGGGAATATTTTGACTacttagataatattttatttaacaaaccgGAAATCAATCCTGTTGCTACATGTAGCATCCAAAAAGGACTTATTACAGatGAACACCAACAATCATGTCCATCAAGTCCCTCATCATCTGTTGAAGAGGAACCTGAATGCAgtagtagaaaaagaaaacgacGACTAAACCTCGTCgaacaaaaacataaagaaaaaatgcaaCGCCAAGATAGATATTTAGATTTATTAGAAAGACTAACGGTGGCCATAGAAAAGCGCAATACATAA
Protein Sequence
MDVDSIANCAIKSEVILIETFAFSGKYEDYGESQEPKTDLAVHEELFKRKQEDSVEHIDVHAARNEYICNECNYTTFIKRNLKRHIKIHKGGDVTRDKYQCKECDYKTAWKSSLKKHIKIHTGYKYKCKECDYKTVWRNRLKEHVKIHTGDEYKCKECDYKTVWRNLLKQHIKVHTGDEYKCKECDYKTVRKNQLKAHIKIHTGDEYKCIECDYKTVWKYQLKAHIKIHTGDEYKCNECDYKTVRKNQLKAHVKIHTSNEYKCKECDYKTVWKNLLKEHIKVHTGDEYKCKECDYKTVRENRLKAHVKIHTGNEYKCKECDFKAVWKYQLKEHIKIHTGDEYKCKECDYKTVWRNLLKEHIKVHTGDEYKCKECDYKTVRKNQLKAHIKIHTGDEYKCNECDYKTVWKYQLKAHIKIHTGDEYKCNECDYKTVRKNQLKAHVKIHTSNEYKCKECDYKTVWKNLLKEHIKVHTGDEYKCKECDYKTVRENRLKAHVKIHTGNEYKCKECDFKAVWKYQLKEHIKIHTGDEYKCEECDYKTVQKNRLKKHIKIHTGDEYKCKECDYKTVWKYELNAHIKIHTGDEYKCKECDFKTVWKYELNAHIKIHTGDEYKCKECDFKAVWKYQLKEHIKIHTGDEYKCKECDYKTLRKHQLKVHTKIHTGDEYKCKECDYKTVQKNQLKEHIKIHTGDEYKCNECDYKTVRKNQLNAHIKIHTGDEYKCNECGYKTVRKNQLNAHIKIHTGDKYKCKECDYTTAWKKYLNAHIKIHAGDEYKCKDCDYKTVWKYQLMQHVRIHTGDEYKCKECDYKTVQKYRLKAHIKIHTGDEYKCKECDYKTVWISNLKEHIKIHTGDEYKCNECDYKTVQKYQLKEHIRIHTAVLTIQSLKSTCSHIHLQVGTNYQIVSLISTWVTKAYIYKENFNEHIVIGDFSALQGVSARFVEHNVHVVNYNDKAPEPASLQSAEKIWCKGNVLMLIDAYKQHEAQFATTIKKVVWQKIGNVLSEKANVTITTQQCDTKWKGMLKMYKQIKDANAKSGNSPKNWEYFDYLDNILFNKPEINPVATCSIQKGLITDEHQQSCPSSPSSSVEEEPECSSRKRKRRLNLVEQKHKEKMQRQDRYLDLLERLTVAIEKRNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-