Lyun007302.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:8842748-8846757[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 41 0.11 1.6 9.5 0.6 1 23 134 156 134 156 0.97
2 41 0.001 0.014 15.9 3.9 1 23 161 183 161 183 0.99
3 41 0.00015 0.0022 18.5 3.8 1 23 188 210 188 210 0.99
4 41 0.066 0.94 10.2 2.3 1 23 215 237 215 237 0.98
5 41 0.00022 0.0031 18.0 4.0 1 23 242 264 242 264 0.99
6 41 1.6e-05 0.00022 21.6 1.5 1 23 269 291 269 291 0.99
7 41 0.00025 0.0035 17.8 2.5 1 23 296 318 296 318 0.99
8 41 0.36 5 7.9 3.4 1 23 323 345 323 345 0.98
9 41 0.053 0.75 10.5 3.4 1 23 350 372 350 372 0.98
10 41 0.047 0.66 10.7 1.8 1 23 377 399 377 399 0.98
11 41 0.28 4 8.2 2.3 1 23 404 426 404 426 0.98
12 41 0.0065 0.091 13.4 0.5 1 23 431 453 431 453 0.98
13 41 0.00027 0.0038 17.7 1.6 1 23 458 480 458 480 0.98
14 41 0.00027 0.0038 17.7 1.6 1 23 499 521 499 521 0.98
15 41 0.00027 0.0038 17.7 1.6 1 23 526 548 526 548 0.98
16 41 0.0049 0.069 13.8 3.7 1 23 553 575 553 575 0.99
17 41 0.016 0.23 12.1 0.3 1 23 580 602 580 602 0.98
18 41 0.00027 0.0038 17.7 1.6 1 23 607 629 607 629 0.98
19 41 0.00027 0.0038 17.7 1.6 1 23 639 661 639 661 0.98
20 41 0.015 0.21 12.2 0.4 1 23 666 688 666 688 0.98
21 41 0.36 5 7.9 3.4 1 23 693 715 693 715 0.98
22 41 0.038 0.54 10.9 3.6 1 23 720 742 720 742 0.98
23 41 0.057 0.81 10.4 0.2 1 23 747 769 747 769 0.98
24 41 0.0043 0.061 13.9 1.4 1 23 774 796 774 796 0.99
25 41 0.022 0.31 11.7 0.2 1 23 801 823 801 823 0.98
26 41 0.00027 0.0038 17.7 1.6 1 23 828 850 828 850 0.98
27 41 0.037 0.52 11.0 0.7 1 23 855 877 855 877 0.98
28 41 0.0077 0.11 13.1 0.3 1 23 882 904 882 904 0.98
29 41 8.7e-05 0.0012 19.2 1.1 1 23 909 931 909 931 0.98
30 41 0.00027 0.0038 17.7 1.6 1 23 941 963 941 963 0.98
31 41 0.0077 0.11 13.1 0.3 1 23 968 990 968 990 0.98
32 41 0.58 8.2 7.2 2.1 1 23 995 1017 995 1017 0.98
33 41 0.038 0.54 10.9 3.6 1 23 1022 1044 1022 1044 0.98
34 41 0.057 0.81 10.4 0.2 1 23 1049 1071 1049 1071 0.98
35 41 0.0043 0.061 13.9 1.4 1 23 1076 1098 1076 1098 0.99
36 41 0.011 0.16 12.6 0.3 1 23 1103 1125 1103 1125 0.98
37 41 0.037 0.52 11.0 0.7 1 23 1130 1152 1130 1152 0.98
38 41 0.00019 0.0027 18.2 0.9 1 23 1157 1179 1157 1179 0.97
39 41 1.8 26 5.7 4.2 1 23 1184 1206 1184 1206 0.98
40 41 0.02 0.28 11.8 0.4 1 23 1211 1233 1211 1233 0.98
41 41 0.09 1.3 9.8 2.9 1 23 1238 1260 1238 1260 0.98

Sequence Information

Coding Sequence
atgGATGCTGATTCTATTGAAAGTTGTctaataaaatctgaagtgattttaacgGAAACGTTTTGTGGACAATATGGTGGTTATGGGGATGAACAACTAAAAACAGAATGTAACGATATTTCTGTAGGGCAGAATGGCGTGCATGCTGTTCCGATGGAACAATTATCTTGTAATGAGTGTGACTTTATGGAAATGGAAAAAGATTCTCTAATCGCCAACAATGTTCAGAATTCTTGTAAGGAATGTAGCTTTACAACCCGGTTACAGTGTTCCATAAAAAAGCATTTTGAGGTTCACGAAggtgtagataataaatatattgttgaCGAAAGGAATTTTCAGACAACacagaatttttgtttaacacaGCAGTGGAAAACTTCAAAAAGTGGTgtcaaatatatttgtaatgaatgtaattataccacattAATCAAGGACTCTCTAAgaagacatgttaaaattcataaagaggctgaatataagtgtaaagaatgtgattataaaacggtaaggAAAAGTTGTCTGaaggaacacgtcaaaattcatacaggtgttgaATACAAGTGTCAAGAATGTCACTATAAAACGGTGCGAAAAGAAAATCTAAagcaacacatcaaaattcatacaggtgatgaatataagtgtacagaatgtgattataaaacagtgtggcaacatagtctaaagcaacacgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaactgtaaggaaaagttgtttaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgcgattataaaacggtaaggaaaagtagtctaaaggtacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgactataaaacggtgcgaaaagaaaatttcaagcaacatgtcaaaattcatgcaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaacaTAGACTAAAGCAACacctcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgttgCAACATAGACTAAAgcaacacgtcaaaattcatacagatgacaaatatgagtgtaaagattgtgattataaaacagtgtggcaacatagtctaaagcaacacgtcaaaattcatacagatgacaaatatgagtgtaaagattgtgattataaaacagtgtggcaacatagtctaaaggaacacttcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacagcatggcaaagtgctctaaagcaacatgtcaaaattcatacagatgacaaatatgagtgtaaagaatgtgactataaaacggtgcgaaaagaaaatttcaagcaacatgtcaaaattcatacagcatggcaaagtgctctaaagaaacatgtcaaaattcatacagatgacaaatatgagtgtaaagaatgtgactataaaacggtgcgaaaagaaaatttcaagcaacatgtcaaaattcatacagatgacaaatatgagtgtaaagaatgtgactataaaacggtgcgaaaagaaaatttcaagcaacatgtcaaaattcacacaggtgatgaatataagtgtaaacaatgtgattataaaacagtgttgCAACATAGTCTAAagcaacacatcaaaattcatacagatgacaaatatgagtgtaaagaatgtgattataaaacagcatggcaaagtgctctaaagcaacatgtcaaaattcatacagatgacaaatatgagtgtaaagaatgtgactataaaacggtgcgaaaagaaaatttcaagcaacatgtcaaaattcatacaggtgatgaatataagtatgacaaatatgagtgtaaagaatgtgactataaaacggtgcgaaaagaaaatttcaagcaacatgtcaaaattcatacagatgacaaatatgagtgtaaagaatgtgattataaaacagcatggaaaagTTCTCTAAAgatacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaacaTAGACTAAAGCAACacctcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgttgcaacatagtctaaaggaacacttcaaaattcatacaggtaatgaatatatgtgtaacgaatgtgattataaaacagcatggcaaaATGCGCTAAAGCAGCACGTCAGAATTCATAAGGTttacaaatataagtgtaaagaatgtgattacaaaacagcatggaaaagttctctaaagaaacatgtcaaaattcatacagatgacaaatatgagtgtaaagattgtgattataaaacagtgtggcaagaTGGTTTAaataaacatgtcaaaattcatacagatgacaaatatgagtgtaaagaatgtgactataaaacggtgcgaaaagaaaatttcaagcaacatgtcaaaattcacacaggtgatgaatataagtgtaaacaatgtgattataaaacagtgtggcaagaTGGTTTAaataaacatgtcaaaattcatacagatgacaaatatgagtgtaaagaatgtgattataaaacagcatggcaaagtgctctaaagaaacatgtcaaaattcatacaggtaatgaatatgagtgtaaagaatgtgactataaaacggtgcgaaaatataatctaatgcaacatgtaaaagttcatacaggtgatgaatataagtatgacaaatatgagtgtaaagaatgtgactataaaacggtgcgaaaagaaaatttcaagcaacatgtcaaaattcatacagatgacaaatatgagtgtaaagaatgtgattataaaacagcatggcaaagtgctctaaagaaacatgtcaaaattcatacaggtaatgaatatgagtgtaaagaatgtgattataaaacagtgtggcaacaTAGACTAAAgcaacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgttgcaacatagtctaaaggaacacttcaaaattcatacaggtaatgaatatatgtgtaacgaatgtgattataaaacagcatggcaaaATGCGCTAAAGCAGCACGTCAGAATTCATAAAGTttacaaatataagtgtaaagaatgtgattacaaaacagcatggaaaagttctctaaagaaacatgtcaaaattcatacagatgacaaatatgagtgtaaagattgtgattataaaacagcatggcaaagtgctctaaagcaacatgtcaaaattcacacaggtgatgaatataagtgtaaacaatgtgattataaaacagtgtggcaagaTGGTTTAaataaacatgtcaaaattcacactggtgatgaatatgcgtgtaaagaatgtgactataaaacggtgcgaaaatataatctaatgcaacatgtaaaagttcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaatgtcgcctaaagaaacatgtcaaaattcatacagatgacaaatatgagtgtaaagaatgtgattttaaaacagcatggcaaagTGCTCTAAAgaaacacgtcaaaattcatacaggtaatgaatatgagtgtaaagaatgtgattataaaacagtgtggaaagatTGTCTAAAATCACATATTAAAAGACACAGGTGA
Protein Sequence
MDADSIESCLIKSEVILTETFCGQYGGYGDEQLKTECNDISVGQNGVHAVPMEQLSCNECDFMEMEKDSLIANNVQNSCKECSFTTRLQCSIKKHFEVHEGVDNKYIVDERNFQTTQNFCLTQQWKTSKSGVKYICNECNYTTLIKDSLRRHVKIHKEAEYKCKECDYKTVRKSCLKEHVKIHTGVEYKCQECHYKTVRKENLKQHIKIHTGDEYKCTECDYKTVWQHSLKQHVKIHTGDEYKCKDCDYKTVRKSCLKEHIKIHTGDEYKCKECDYKTVRKSSLKVHIKIHTGDEYKCKECDYKTVRKENFKQHVKIHAGDEYKCKECDYKTVWQHRLKQHLKIHTGEEYKCKECDYKTVLQHRLKQHVKIHTDDKYECKDCDYKTVWQHSLKQHVKIHTDDKYECKDCDYKTVWQHSLKEHFKIHTGDEYKCKDCDYKTAWQSALKQHVKIHTDDKYECKECDYKTVRKENFKQHVKIHTAWQSALKKHVKIHTDDKYECKECDYKTVRKENFKQHVKIHTDDKYECKECDYKTVRKENFKQHVKIHTGDEYKCKQCDYKTVLQHSLKQHIKIHTDDKYECKECDYKTAWQSALKQHVKIHTDDKYECKECDYKTVRKENFKQHVKIHTGDEYKYDKYECKECDYKTVRKENFKQHVKIHTDDKYECKECDYKTAWKSSLKIHVKIHTGDEYKCKECDYKTVWQHRLKQHLKIHTGEEYKCKECDYKTVLQHSLKEHFKIHTGNEYMCNECDYKTAWQNALKQHVRIHKVYKYKCKECDYKTAWKSSLKKHVKIHTDDKYECKDCDYKTVWQDGLNKHVKIHTDDKYECKECDYKTVRKENFKQHVKIHTGDEYKCKQCDYKTVWQDGLNKHVKIHTDDKYECKECDYKTAWQSALKKHVKIHTGNEYECKECDYKTVRKYNLMQHVKVHTGDEYKYDKYECKECDYKTVRKENFKQHVKIHTDDKYECKECDYKTAWQSALKKHVKIHTGNEYECKECDYKTVWQHRLKQHVKIHTGDEYKCKECDYKTVLQHSLKEHFKIHTGNEYMCNECDYKTAWQNALKQHVRIHKVYKYKCKECDYKTAWKSSLKKHVKIHTDDKYECKDCDYKTAWQSALKQHVKIHTGDEYKCKQCDYKTVWQDGLNKHVKIHTGDEYACKECDYKTVRKYNLMQHVKVHTGDEYKCKECDYKTVWKCRLKKHVKIHTDDKYECKECDFKTAWQSALKKHVKIHTGNEYECKECDYKTVWKDCLKSHIKRHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-