Lyun012650.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001977.1:740260-751384[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.12 1.7 9.4 0.5 1 23 106 128 106 128 0.97
2 28 0.02 0.29 11.8 4.4 1 23 133 155 133 155 0.98
3 28 2.3e-05 0.00033 21.1 1.4 1 23 160 182 160 182 0.99
4 28 0.029 0.41 11.3 3.0 1 23 187 209 187 209 0.98
5 28 0.0013 0.018 15.6 1.6 1 23 214 236 214 236 0.99
6 28 0.037 0.53 11.0 0.4 1 23 241 263 241 263 0.98
7 28 0.066 0.94 10.2 0.9 1 23 268 290 268 290 0.98
8 28 0.41 5.8 7.7 6.0 1 23 295 317 295 317 0.98
9 28 0.043 0.6 10.8 2.2 1 23 322 344 322 344 0.94
10 28 7.7e-05 0.0011 19.4 0.9 1 23 349 371 349 371 0.99
11 28 2.9e-05 0.00041 20.8 0.7 1 23 376 398 376 398 0.99
12 28 2e-05 0.00029 21.2 1.0 1 23 403 425 403 425 0.99
13 28 2e-05 0.00029 21.2 1.0 1 23 430 452 430 452 0.99
14 28 2e-05 0.00029 21.2 1.0 1 23 457 479 457 479 0.99
15 28 0.023 0.32 11.6 2.1 1 23 484 506 484 506 0.98
16 28 2e-05 0.00029 21.2 1.0 1 23 511 533 511 533 0.99
17 28 2.1e-05 0.0003 21.2 1.7 1 23 538 560 538 560 0.99
18 28 2.1e-05 0.0003 21.2 1.7 1 23 565 587 565 587 0.99
19 28 2e-05 0.00029 21.2 1.0 1 23 592 614 592 614 0.99
20 28 2e-05 0.00029 21.2 1.0 1 23 619 641 619 641 0.99
21 28 2.1e-05 0.0003 21.2 1.7 1 23 646 668 646 668 0.99
22 28 2.1e-05 0.0003 21.2 1.7 1 23 673 695 673 695 0.99
23 28 0.043 0.6 10.8 2.2 1 23 700 722 700 722 0.94
24 28 7.7e-05 0.0011 19.4 0.9 1 23 727 749 727 749 0.99
25 28 3e-05 0.00042 20.7 1.4 1 23 754 776 754 776 0.99
26 28 1.6e-05 0.00023 21.6 0.9 1 23 781 803 781 803 0.99
27 28 9.8e-05 0.0014 19.1 0.9 1 23 808 830 808 830 0.99
28 28 8.1e-06 0.00011 22.5 1.0 1 23 835 857 835 857 0.99

Sequence Information

Coding Sequence
ATGAATGTTGATTCAATTGAAAGTTTtccaataaaatctgaagtgattttaacagaaacgtttTCGTTTGGTGCAGAATACAGAAatTATGGTAGTGAAGAACTAAAAACGGAGGCAGTTGATTGCATAGAATCGTTTAAATGTAACGAGGAAAATGTTCCCGTGGAGCACATGGATAAAAATGCTGCTATGATGCTACTTTACTCTTCTAAtgaaagtaacttttttacaactaaaacaaatatatgtaattttaaaaaaccacagACTTTCCCTTCAACACCACTActggaaactacaaaaaatggtgatgaatatatttgtgctgaatgtaattatacaacATTTATCAAAAATGGCCTAAggaaacatgtgaaaattcataaaggtgCTGAATATACTTGTGAGAATTGTAGCTATAAAACGTGTTCGAAACGTTCTTTCACAGCACacattaaaatacatacagttttcaaatataagtgtaaagggtgtgattataaaacagtacggaaaagtaacctaaaggaacatgtcaaaattcatttaggtgacaaatacaagtgtaaagaatgtgattataaaacagtgtggcgtAGTAGTCTATGccgacatgtcaaaattcatacggaCAAAGCGTATAAGTGTGAAACATGCGATTATAAGACAATACGGAAAACTAccctaaaggaacatgtcaaaattcatacaggcgacatatataaatgtgaagaatgtgattataaaacaatatggaaaggTACTCTAATGaagcatgtcaaaattcatgcaggcaatgtatataattgtaaagaatgtgattataaaacagtgtggagaAATAACCTAaggcaacatgtcaaaattcatgcaggtaATGTATATAAGTGTGATAAATGCGATTATAGGACAGTACGGAGATGTAATATATACcaccatgtcaaaattcatagagGCGACatatataagtgtaacgaatgtgattataaagcagTACGCgaaagtagtctaaaggaacattgcAAAATTCATGGAGGCATTgtatataagtgtgaagaatgtgattataatacagTACGGAAAGGTAATCTAAAAGAACATCGTAAAATTCATGCAGGCGACgtatataagtgtgaagaatgtgattataatacagTACGGAAAAGTAacctaaaggaacatgtcaaaattcatacaggcgacatatataagtgtgaagaatgtgattataaaacagtacggaaaagtaatctaaaggaacatgtcaaaattcatacaggcgacatatataaatgtgaagaatgtgattataaaacagtacggaaaagtaatctaaaggaacatgtcaaaattcatgcaggtaatgtatataagtgtgaagaatgtgattataaaacagtacggaaaagtaacctaaaggaacatgtcaaaattcatacaggcgacatatataaatgtgaagaatgtgattataaaacagtgtggcgtAGTAGTCTATGccgacatgtcaaaattcatgcaggtaatgtatataagtgtgaagaatgtgattataaaacagtacggaaaagtaacctaaaggaacatgtcaaaattcatacaggcgacatatataagtgtaaagaatgtgattataaaacagtacggaaaagtaacctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtacggaaaagtaatctaaaggaacatgtcaaaattcatgcaggtaatgtatataagtgtgaagaatgtgattataaaacagtacggaaaagtaatctaaaggaacatgtcaaaattcatacaggcgacatatataaatgtgaagaatgtgattataaaacagtacggaaaagtaatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtacggaaaagtaatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtacggaaaagtaatctaaaggaacatgtcaaaattcatagagGCGACatatataagtgtaacgaatgtgattataaagcagTACGCgaaagtagtctaaaggaacattgcAAAATTCATGGAGGCATTgtatataagtgtgaagaatgtgattataatacagTACGGAAAGGTAATCTAAAAGAACATCGTAAAATTCATGCAGGCGACgtatataagtgtgaagaatgtgattataatacagtacggaaaagtaatctaaaagaACATCGTAAAATTCATGCAGGCGACgtatataagtgtgaagaatgtgattataatacagtacggaaaagtaatctaaaggaacatctcaaaattcatacaggcgtcatgtataagtgtaaagaatgtgattatcaagcagtacagaaaagtaatttaaagaatcatgtcaaaattcatacaggtgatgaatataagtgtaatgaatgtgattataaaacagtacggaaaagtaatctaacgGAACATGTCAGAATTCATACAAGTGAGagatataagtgtaaagaatgtgattataaaactgtatggaaaagTTATGGTAGTGAAGAACTGAAAACAGAGCCAGTAGATTGCAAAGAATCGtttaaatgtaaggaagaaAATGTTCATGTGGAGCACACGGATAAAAATGCTGCTACGATGATACTCCACTCTTCTAGtgaatgtaactttacaacaACGAAAAAAGATTTGGACATAACTAAAAATGTTCAATCATTTTGTACCGATTGTATCTGTACAGCCCAGTCAGAATGTTTCAAAAAAGAGCATTTGAAAAGTCACAATGGAaatgtagaaaaaaagaaaaattggcaGAGAAAACAAAGATTGAAAGAGAAAGACATTTATAACAAAACAGAAGAActagaaaaaaatgaaagagaaaggAGTGCaattgGAAACAAGGCTGCAACAGAACGTTTAGACGAGGCAAGTAAAAAATGTGAAACGGTATCAGGACAAAATGATGTTACTAAAGCAAATGCAGCACAGGGTCTAAGCAGCACTAAATTTGAaactataacaaaatattttacatga
Protein Sequence
MNVDSIESFPIKSEVILTETFSFGAEYRNYGSEELKTEAVDCIESFKCNEENVPVEHMDKNAAMMLLYSSNESNFFTTKTNICNFKKPQTFPSTPLLETTKNGDEYICAECNYTTFIKNGLRKHVKIHKGAEYTCENCSYKTCSKRSFTAHIKIHTVFKYKCKGCDYKTVRKSNLKEHVKIHLGDKYKCKECDYKTVWRSSLCRHVKIHTDKAYKCETCDYKTIRKTTLKEHVKIHTGDIYKCEECDYKTIWKGTLMKHVKIHAGNVYNCKECDYKTVWRNNLRQHVKIHAGNVYKCDKCDYRTVRRCNIYHHVKIHRGDIYKCNECDYKAVRESSLKEHCKIHGGIVYKCEECDYNTVRKGNLKEHRKIHAGDVYKCEECDYNTVRKSNLKEHVKIHTGDIYKCEECDYKTVRKSNLKEHVKIHTGDIYKCEECDYKTVRKSNLKEHVKIHAGNVYKCEECDYKTVRKSNLKEHVKIHTGDIYKCEECDYKTVWRSSLCRHVKIHAGNVYKCEECDYKTVRKSNLKEHVKIHTGDIYKCKECDYKTVRKSNLKEHVKIHTGDEYKCKECDYKTVRKSNLKEHVKIHAGNVYKCEECDYKTVRKSNLKEHVKIHTGDIYKCEECDYKTVRKSNLKEHVKIHTGDEYKCKECDYKTVRKSNLKEHVKIHTGDEYKCKECDYKTVRKSNLKEHVKIHRGDIYKCNECDYKAVRESSLKEHCKIHGGIVYKCEECDYNTVRKGNLKEHRKIHAGDVYKCEECDYNTVRKSNLKEHRKIHAGDVYKCEECDYNTVRKSNLKEHLKIHTGVMYKCKECDYQAVQKSNLKNHVKIHTGDEYKCNECDYKTVRKSNLTEHVRIHTSERYKCKECDYKTVWKSYGSEELKTEPVDCKESFKCKEENVHVEHTDKNAATMILHSSSECNFTTTKKDLDITKNVQSFCTDCICTAQSECFKKEHLKSHNGNVEKKKNWQRKQRLKEKDIYNKTEELEKNERERSAIGNKAATERLDEASKKCETVSGQNDVTKANAAQGLSSTKFETITKYFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-