Lyun003811.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000602.1:209004-214076[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 50 0.031 0.44 11.2 1.6 1 23 199 221 199 221 0.99
2 50 0.14 2 9.2 1.1 1 23 226 248 226 248 0.98
3 50 0.0024 0.034 14.7 2.0 1 23 253 275 253 275 0.98
4 50 4.5e-05 0.00063 20.2 1.1 1 23 280 302 280 302 0.99
5 50 0.056 0.8 10.4 1.1 1 23 307 329 307 329 0.98
6 50 0.00011 0.0016 18.9 1.7 1 23 334 356 334 356 0.98
7 50 7.4e-05 0.001 19.5 0.4 1 23 361 383 361 383 0.99
8 50 0.0086 0.12 13.0 0.7 1 23 388 410 388 410 0.98
9 50 0.027 0.39 11.4 0.9 1 23 415 437 415 437 0.98
10 50 1.2 17 6.2 1.1 1 23 442 464 442 464 0.95
11 50 0.061 0.86 10.3 1.3 1 23 469 491 469 491 0.98
12 50 0.00017 0.0024 18.3 1.8 1 23 496 518 496 518 0.99
13 50 1.6 22 5.8 2.6 1 23 523 546 523 546 0.74
14 50 0.00025 0.0036 17.8 2.9 1 23 551 573 551 573 0.99
15 50 0.027 0.39 11.4 0.4 1 23 578 600 578 600 0.98
16 50 5.3e-05 0.00074 19.9 1.4 1 23 605 627 605 627 0.99
17 50 0.0091 0.13 12.9 0.6 1 23 632 654 632 654 0.98
18 50 0.0017 0.024 15.2 2.7 1 23 659 681 659 681 0.99
19 50 0.85 12 6.7 1.3 1 23 686 708 686 708 0.98
20 50 0.023 0.32 11.7 2.0 1 23 713 735 713 735 0.98
21 50 0.81 12 6.8 0.6 6 23 759 775 756 775 0.90
22 50 0.0012 0.017 15.7 0.9 1 23 780 802 780 802 0.99
23 50 0.0061 0.087 13.4 0.8 1 23 807 829 807 829 0.99
24 50 0.027 0.39 11.4 2.2 1 23 834 856 834 856 0.98
25 50 0.014 0.2 12.3 3.3 1 23 875 897 875 897 0.99
26 50 0.014 0.2 12.3 3.3 1 23 902 924 902 924 0.99
27 50 0.014 0.2 12.3 3.3 1 23 929 951 929 951 0.99
28 50 0.014 0.2 12.3 3.3 1 23 956 978 956 978 0.99
29 50 0.014 0.2 12.3 3.3 1 23 983 1005 983 1005 0.99
30 50 0.014 0.2 12.3 3.3 1 23 1010 1032 1010 1032 0.99
31 50 0.014 0.2 12.3 3.3 1 23 1037 1059 1037 1059 0.99
32 50 0.014 0.2 12.3 3.3 1 23 1064 1086 1064 1086 0.99
33 50 0.014 0.2 12.3 3.3 1 23 1091 1113 1091 1113 0.99
34 50 0.014 0.2 12.3 3.3 1 23 1118 1140 1118 1140 0.99
35 50 0.014 0.2 12.3 3.3 1 23 1145 1167 1145 1167 0.99
36 50 0.014 0.2 12.3 3.3 1 23 1172 1194 1172 1194 0.99
37 50 0.014 0.2 12.3 3.3 1 23 1199 1221 1199 1221 0.99
38 50 0.014 0.2 12.3 3.3 1 23 1226 1248 1226 1248 0.99
39 50 0.014 0.2 12.3 3.3 1 23 1253 1275 1253 1275 0.99
40 50 0.014 0.2 12.3 3.3 1 23 1280 1302 1280 1302 0.99
41 50 0.014 0.2 12.3 3.3 1 23 1307 1329 1307 1329 0.99
42 50 0.014 0.2 12.3 3.3 1 23 1334 1356 1334 1356 0.99
43 50 0.014 0.2 12.3 3.3 1 23 1361 1383 1361 1383 0.99
44 50 0.014 0.2 12.3 3.3 1 23 1388 1410 1388 1410 0.99
45 50 0.014 0.2 12.3 3.3 1 23 1415 1437 1415 1437 0.99
46 50 0.014 0.2 12.3 3.3 1 23 1442 1464 1442 1464 0.99
47 50 0.014 0.2 12.3 3.3 1 23 1469 1491 1469 1491 0.99
48 50 0.014 0.2 12.3 3.3 1 23 1496 1518 1496 1518 0.99
49 50 0.014 0.2 12.3 3.3 1 23 1523 1545 1523 1545 0.99
50 50 0.014 0.2 12.3 3.3 1 23 1550 1572 1550 1572 0.99

Sequence Information

Coding Sequence
ATGGATATCGATTCGGtagactttattgaaaattgtgctataaaatcagaagtgattttaacagaaacattttctttttgtgccGAAGattGTGAGAGTAAGGAACTGAAACCGGAGTCAGTAGATTACGAAGAATCGCTTCaacctaaagaaaaaaatgatctAGCAGAACCTATAGATACATATGCTACTCCGATGCAACGAGATTTTTCTAACgactataattttataacaattggaGAAAATTCTCTAGTAGAACTTTTGGAAACTCCTAAAAGCATTAAACACTcttgcaaagaatgtgattttacaACCCAGTTAGAGGTTTCTATAAAAGAGCATACGAGGGGACACAATGATGGATATattattgaagaatgtaattttaagacacCACAGATTTTCTCTCTATCTCCACagttaaaaattccaaaaagtGGTAATGGatgtaattacaccacattgAACGAAAATGATCTAAAGAGACATGTGAAGATTTACAAAAGTGCTGCATATAGTTGCAAGAAATATGATTATAATACACGATGGAAAGGTCACGTCATAGCACATGGTAAAATTCATTCAggcaataaatataagtgtaaaaaatgtgattataaaacagtgtggaaagctAGTTTAAAGcaacatcttaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtatggaagagtcgtctaaaagaacatgtcaaaattcatactggtgacgaatataagtgtaaagaatgtgattttaaaactgtacggaaaagtagactaaaggaacatgtcaaaattcatactggggacgaatataagtgtaaagagtgtgattataaaaccgtacagaaaagtaatctaatacaacatgtcaaaattcattctgCTGACAAATACGAGtgcaaagagtgtgattataaaacggtatggaaaggtcatctaaaggaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattttaaaactgtaaggaaaagtaatctaatgcaacatgttaaaattcataccggtgacaAATATacgtgtgaagaatgtgattataaaacagtacagaaaggtaatctaatgcaacacatcaaaattcatactggtgacaaatataggtgtaaagagtgtgattataaaacagcatggaaaagtaatctaatgcaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtatggagaagtagtctaaaggaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaacattatggaaaagtagtctaaaggaacatgtcaaaattcatactggtgacgaatataagtgtaaagaatgtgattataaaactatatggaaaaagcaactaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatatAATGCAACATATCAAAACTCATACAGATGAtgcatataagtgtaaagagtgtgattataaaacagtacggaaagGGCATagactaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtacacaAAAGTGATCTAACgcaacacgtcaaaattcatactggtgacaaatatacgtgtaaagagtgtgattataaaacggcatGGAAaggtaatctaatgcaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacggtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtgacgaatatacctgtaaagaatgtgattataaaacggcatggaaaagtaatctaatgcaacatgtcaaaattcatactggtcaagaatataaatgtaaagaatgtgattataaaacagtacacaaaaatgatctaatgcaacatgtcaaaattcatactggtgacaaatatacgTGTAAAGAGtgcgattataaaacggtatggaaaaggcaaataaaggaacatgtcaaaactcATACAGGTGATACACATAAGTGTAGAGAGTGTGATTATGAAACGGTACGGAGTAGTagactaaaggaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaaacagtgtggaaaagtcatctaaaggaacatgtcaaaattcatacaggaaaagtaatctaatgcaacatgtcaaaactcatacaggtgatgcatataagtgtaaagagtgtgattatgaAACGGTACGGAGTAGTagactaaaggaacatgtcaaaattcataaaggtgaagaatataagtgtaaagaatgtgattataaaacggcatggaaaagtaatctaatgcaacatgtcaaaattcatactggtgacaaatatacgtgtaaagagtgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaattcatactgtgtggaaaagtcatctaaaggaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagagtgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagagtgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagagtgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagagtgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagagtgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagagtgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagagtgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagagtgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagagtgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagagtgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagagtgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagagtgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgcatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaaggaacatgtcaaaactcatacaggtgatgCATATAAGTGTAAATATTATATAGCCGGTAATGTTTCTCATTTCTATTGTCCTATTATGAGCATAGCTGTTTTGACTTCATTCAATGCTATTGTTTTAGTTACCAACCGACATACTCCATACTCGTGTGTGTCGCGACGATTCGATTTCGAATTCGATCATGGCAGATATTTTATGCTTGTAAAATATGTTGCCTCTTCACTGTTATGA
Protein Sequence
MDIDSVDFIENCAIKSEVILTETFSFCAEDCESKELKPESVDYEESLQPKEKNDLAEPIDTYATPMQRDFSNDYNFITIGENSLVELLETPKSIKHSCKECDFTTQLEVSIKEHTRGHNDGYIIEECNFKTPQIFSLSPQLKIPKSGNGCNYTTLNENDLKRHVKIYKSAAYSCKKYDYNTRWKGHVIAHGKIHSGNKYKCKKCDYKTVWKASLKQHLKIHTGEEYKCKECDYKTVWKSRLKEHVKIHTGDEYKCKECDFKTVRKSRLKEHVKIHTGDEYKCKECDYKTVQKSNLIQHVKIHSADKYECKECDYKTVWKGHLKEHVKIHTGDEYKCKECDFKTVRKSNLMQHVKIHTGDKYTCEECDYKTVQKGNLMQHIKIHTGDKYRCKECDYKTAWKSNLMQHVKIHTGDEYKCKECDYKTVWRSSLKEHVKIHTGDKYKCKECDYKTLWKSSLKEHVKIHTGDEYKCKECDYKTIWKKQLKEHVKIHTGEEYKCKECDYKTVQKSNIMQHIKTHTDDAYKCKECDYKTVRKGHRLKEHVKIHTGEEYKCKECDYKTVHKSDLTQHVKIHTGDKYTCKECDYKTAWKGNLMQHVKIHTGDEYKCKECDYKTVQKSNLMQHVKIHTGDEYTCKECDYKTAWKSNLMQHVKIHTGQEYKCKECDYKTVHKNDLMQHVKIHTGDKYTCKECDYKTVWKRQIKEHVKTHTGDTHKCRECDYETVRSSRLKEHVKIHTGDEYKCKECDYKNSVEKSSKGTCQNSYRKSNLMQHVKTHTGDAYKCKECDYETVRSSRLKEHVKIHKGEEYKCKECDYKTAWKSNLMQHVKIHTGDKYTCKECDYKTVWKSHLKEHVKIHTVWKSHLKEHVKIHTGDEYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKECDYKTVWKSHLKEHVKTHTGDAYKCKYYIAGNVSHFYCPIMSIAVLTSFNAIVLVTNRHTPYSCVSRRFDFEFDHGRYFMLVKYVASSLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-