Lyun015141.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002131.1:2668981-2692287[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 44 0.029 0.41 11.3 0.7 1 22 60 81 60 81 0.96
2 44 0.14 2 9.2 0.6 1 23 145 167 145 167 0.98
3 44 2.3 32 5.4 3.2 1 23 172 194 172 194 0.98
4 44 0.015 0.21 12.2 0.9 1 23 199 221 199 221 0.98
5 44 0.071 1 10.1 0.6 1 23 226 248 226 248 0.98
6 44 0.0016 0.023 15.3 4.7 1 23 253 275 253 275 0.98
7 44 0.011 0.16 12.6 3.1 1 23 280 302 280 302 0.98
8 44 0.047 0.67 10.6 2.1 1 23 307 329 307 329 0.99
9 44 0.014 0.2 12.3 4.0 1 23 334 356 334 356 0.99
10 44 7.8e-05 0.0011 19.4 1.6 1 23 388 410 388 410 0.99
11 44 0.046 0.65 10.7 4.9 1 23 415 437 415 437 0.98
12 44 0.069 0.97 10.1 0.3 1 21 469 489 469 490 0.93
13 44 0.079 1.1 9.9 0.9 1 23 547 569 547 569 0.98
14 44 0.028 0.39 11.4 1.1 1 23 574 596 574 596 0.98
15 44 0.024 0.35 11.5 0.7 1 23 601 623 601 623 0.99
16 44 0.0084 0.12 13.0 1.6 1 23 628 650 628 650 0.99
17 44 0.0078 0.11 13.1 5.4 1 23 655 677 655 677 0.99
18 44 0.024 0.35 11.5 0.7 1 23 682 704 682 704 0.99
19 44 0.0084 0.12 13.0 1.6 1 23 709 731 709 731 0.99
20 44 0.0078 0.11 13.1 5.4 1 23 736 758 736 758 0.99
21 44 0.023 0.32 11.6 0.9 1 23 763 785 763 785 0.98
22 44 0.024 0.34 11.6 4.9 1 23 790 812 790 812 0.98
23 44 0.0018 0.026 15.1 0.9 1 23 817 839 817 839 0.98
24 44 0.016 0.22 12.2 0.9 1 23 844 866 844 866 0.98
25 44 0.0019 0.027 15.0 0.8 1 23 871 893 871 893 0.98
26 44 4.7e-05 0.00066 20.1 0.8 1 23 898 920 898 920 0.99
27 44 0.0024 0.033 14.7 3.7 1 23 925 947 925 947 0.99
28 44 0.0094 0.13 12.9 4.8 1 23 952 974 952 974 0.99
29 44 0.00092 0.013 16.0 1.7 1 23 979 1001 979 1001 0.99
30 44 0.0012 0.017 15.7 0.9 1 23 1006 1028 1006 1028 0.99
31 44 0.0032 0.046 14.3 4.3 1 23 1033 1055 1033 1055 0.99
32 44 0.028 0.39 11.4 1.1 1 23 1060 1082 1060 1082 0.98
33 44 0.0041 0.059 14.0 4.2 1 23 1087 1109 1087 1109 0.99
34 44 0.0018 0.026 15.1 0.9 1 23 1114 1136 1114 1136 0.98
35 44 8.6e-05 0.0012 19.3 1.1 1 23 1141 1163 1141 1163 0.99
36 44 0.0019 0.027 15.0 0.8 1 23 1168 1190 1168 1190 0.98
37 44 4.7e-05 0.00066 20.1 0.8 1 23 1195 1217 1195 1217 0.99
38 44 0.0024 0.033 14.7 3.7 1 23 1222 1244 1222 1244 0.99
39 44 0.0094 0.13 12.9 4.8 1 23 1249 1271 1249 1271 0.99
40 44 0.00092 0.013 16.0 1.7 1 23 1276 1298 1276 1298 0.99
41 44 0.0012 0.017 15.7 0.9 1 23 1303 1325 1303 1325 0.99
42 44 8.9e-05 0.0013 19.2 1.7 1 23 1330 1352 1330 1352 0.99
43 44 0.00041 0.0058 17.1 1.0 1 23 1357 1379 1357 1379 0.99
44 44 0.27 3.8 8.3 0.6 1 23 1384 1406 1384 1406 0.96

Sequence Information

Coding Sequence
ATGGATGTTGATTCCACTGaaagttttgtaattaaatctGAAGTGAATTTAACAGAAACCTTTTCGTTTTGGGAACAATATAGAGattgtggGAATGCAGAATTGAAAACTGAACCAGTAAATTATGAAGAATCGTTTCAATGTAAGGAAGAAGATGATCCTGTTCCATTCCAACAATATTCCTGTAATGAGTGTCATTTTATGACAACAGAAAaagattctctaatagaacatttaaaaactactagaaatgttgaatatttttgtaagaaatgtaaatttaaaacctGGATGAAATGTTCTATTAAAGAACATTTGAAGACTCACAACGAAGTAAGTATTAGATATATTACTGAGGAATATACTAATTTTAAGAAGCCATGGATTTTTCCGTTAATGCCACAGATAAAGACTCCAATAAGTGGTGACCAATATGTTTGCAGTGAATGTAATTACACAACATTagtaaaagattatttaaaaagccatgtgaaaattcatagtaGTGATaaatataggtgtaaagaatgtgactttaaaacagtgtggaaacataGGCTTAAAGATcatctcaaaattcacacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgtggaaatatAGTTTAAAggcacatgtcaaaattcacacaggtgataaatataaatgtgaagaatgcgattataaaacagcatggaaacGTAGTCTTAaagatcatgtcaaaattcatacaggtgatgagcataagtgtaaagaatgtgattataaaacagtgcgaaaagatcatTTAAGggagcatgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtaattataaaacggtgcggaaagatcgtctaaaggaacattttaaaattcatacaggtaatgaatataagtgtaaagaatgtgattataaaaccgtATGGAAAGATCATCTAAAGGGCCATCTTAAAATTCACACAGGCagggaatataagtgtaaagaatgtgattataaaacagttcagaaatattgtataatgaaacatatcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggataCATAATCTGAAAGATCATtgcaaaattcatactggtgatgaatataaatgtaaagaatgtaattataaaacagtgcggataAGTAATCTGAAGAATcacattaaaattcacacacgtgataaatataagtgtaaaaaatgtgattataaaacattacgaAAAGATTGTTTAGAGAAAcacattaaaattcacacagATTGTGAAAATGGAGAATTAAAAAGTCAAGCAGTAAATTGTGAAGAATCGTTTAAATGTAAGGAAGGTGATTCTGTTCCATTGCAACAATATACCTgtaatgagtgtaattttaTGACAACGAAAAAAGATTTGCTAATAGAACATTCGAAAATCACTAAAAgtgttgaatatttttgtaagaaatgtaactttaaaacctGGTTGGAATGTTCTATAAAAGAGCATTCGAGGACTCACAATGAAGTATATGTTAGATATATTCCTGAGAACTGGATATTATCATTACTGCCACAGGTAAAGACTCCAATAATTGATGAACTATATGTTtgcaaagaatgtaattataccacgTTAGTAAAAAAAGATCTAAAAAaccatgtgaaaattcatacagctgatgaatataaatgtaaagattgtgattttaaaacagtttggaaaagTAGTCTGaaggatcatgtcaaaattcacacaggtgttgaatataaatgtaaagaatgtgattataaaacagtgtggaaaaatgaCCTGAAGGATCACGTCagaattcacacaggtgatgaatataaatgtaaagaatgtgattataaaacagtatggaaaaataatctgaagaatcatctcaaaattcatacaggtagtggatataagtgtaaaaaatgtgactataaaacagtgcgaaaatattgtttaaaggaacacgtcaaaattcatacaggcgatgaatataaatgtaaagaatgtgattataaaacagtgtggaaaaatgaCCTGAAGGATCACGTCagaattcacacaggtgatgaatataaatgtaaagaatgtgattataaaacagtatggaaaaataatctgaagaatcatctcaaaattcatacaggtagtggatataagtgtaaaaaatgtgactataaaacagtgcgaaaatattgtttaaaggaacacgtcaaaattcatacaggcgatgaatataaatgtagcgattgtgattataaaacagtgtggaaaaataatctGAAGAATCATgccaaaattcacacaggtgtggaacataagtgtgaagaatgtgattacaaaacggTGCAGAGATATTGCCTaatgaaacatgtcaaaattcacacaggtgatgaatataaatgtaacgaatgtgattataaaacaatacagaaaaataGTCTGAGGggtcatgtcaaaattcacagaggtgaggaatataaatgtaatgattgtgattataaaacagtgtggaaaaataatctGAAGAATCATgccaaaattcacacaggtgaggaatataaatgcgaagaatgtgattataaatcagtGCGGAAAGATCGCctgaaggaacatgtcaaaattcacacaggtgatgaatataaatgtgaagaatgtgattataaaactgtacggaaagATAGTCTGAAGGATcacatcaaaattcacacaggtgatgaatataagtgtgaaaaatgtgattacaaaacagtgcaCAAAGATCGTCTgaagcaacatatcaaaattcacaaaggtaatgaatataaatgtaaagaatgtgattataaaacaatgcaGAAATATTGTCTAATgagacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgcaattataaaacagcacagaaaaatagtttaaaggatcatgtcaaaattcatagaggtgatgagtataaatgtgaagaatgcgattataaaacagtgcggaaagatCGTCTGaaggatcatgtcaaaattcacacaggagatgaatataaatgtaaagaatgtgactataaaacagtgcgaaaatattgtttaaaggaacacgtcaaaattcatacaggcgatgaatataaatgtaaagattgtgattttaaaacagtttggaaaagTAGTCTGaaggatcatgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtgattacaaaacggTGCAGAGATATTGCCTaatgaaacatgtcaaaattcacacaggtgatgaatataaatgtaacgaatgtgattataaaacaatacagaaaaataGTCTGAGGggtcatgtcaaaattcacagaggtgaggaatataaatgtaatgattgtgattataaaacagtgcggaaagatAGTCTGaaggatcatgtcaaaattcacagaggtgaggaatataaatgcgaagaatgtgattataaatcagtGCGGAAAGATCGCctgaaggaacatgtcaaaattcacacaggtgatgaatataaatgtgaagaatgtgattataaaactgtacggaaagATAGTCTGAAGGATcacatcaaaattcacacaggtgatgaatataagtgtgaaaaatgtgattacaaaacagtgcaCAAAGATCGTCTgaagcaacatatcaaaattcacaaaggtaatgaatataaatgtaaagaatgtgattataaaacaatgcaGAAATATTGTCTAATgagacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgcaattataaaacagcacagaaaaatagtttaaaggatcatgtcaaaattcatagaggtgatgagtataaatgtgaagaatgcgattataaaacagtgcggaaagatCGTCTGaaggatcatgtcaaaattcacacaggagatgaatataaatgtaaagaatgtgactataaaacagtgcggaaagatAGTCTGaagaatcatgtcaaaattcacacaggtgatgaatataaatgtacagaatgtgattataaaacagtgcgggaAAGGAGTCTAAAGGATcatatcaaaattcacacaggtgatgaatataagtgtgaaaaatgcgattataaaacagtgtggaaaaaagGTCTAAAAAAACATGCCGCAATTCATATAGGCAAGAGAACCGtgaagaattaa
Protein Sequence
MDVDSTESFVIKSEVNLTETFSFWEQYRDCGNAELKTEPVNYEESFQCKEEDDPVPFQQYSCNECHFMTTEKDSLIEHLKTTRNVEYFCKKCKFKTWMKCSIKEHLKTHNEVSIRYITEEYTNFKKPWIFPLMPQIKTPISGDQYVCSECNYTTLVKDYLKSHVKIHSSDKYRCKECDFKTVWKHRLKDHLKIHTGDEYKCKECDYKTVWKYSLKAHVKIHTGDKYKCEECDYKTAWKRSLKDHVKIHTGDEHKCKECDYKTVRKDHLREHVKIHTGDEYKCKECNYKTVRKDRLKEHFKIHTGNEYKCKECDYKTVWKDHLKGHLKIHTGREYKCKECDYKTVQKYCIMKHIKIHTGDEYKCKECDYKTVWIHNLKDHCKIHTGDEYKCKECNYKTVRISNLKNHIKIHTRDKYKCKKCDYKTLRKDCLEKHIKIHTDCENGELKSQAVNCEESFKCKEGDSVPLQQYTCNECNFMTTKKDLLIEHSKITKSVEYFCKKCNFKTWLECSIKEHSRTHNEVYVRYIPENWILSLLPQVKTPIIDELYVCKECNYTTLVKKDLKNHVKIHTADEYKCKDCDFKTVWKSSLKDHVKIHTGVEYKCKECDYKTVWKNDLKDHVRIHTGDEYKCKECDYKTVWKNNLKNHLKIHTGSGYKCKKCDYKTVRKYCLKEHVKIHTGDEYKCKECDYKTVWKNDLKDHVRIHTGDEYKCKECDYKTVWKNNLKNHLKIHTGSGYKCKKCDYKTVRKYCLKEHVKIHTGDEYKCSDCDYKTVWKNNLKNHAKIHTGVEHKCEECDYKTVQRYCLMKHVKIHTGDEYKCNECDYKTIQKNSLRGHVKIHRGEEYKCNDCDYKTVWKNNLKNHAKIHTGEEYKCEECDYKSVRKDRLKEHVKIHTGDEYKCEECDYKTVRKDSLKDHIKIHTGDEYKCEKCDYKTVHKDRLKQHIKIHKGNEYKCKECDYKTMQKYCLMRHVKIHTGDEYKCKECNYKTAQKNSLKDHVKIHRGDEYKCEECDYKTVRKDRLKDHVKIHTGDEYKCKECDYKTVRKYCLKEHVKIHTGDEYKCKDCDFKTVWKSSLKDHVKIHTGDEYKCKECDYKTVQRYCLMKHVKIHTGDEYKCNECDYKTIQKNSLRGHVKIHRGEEYKCNDCDYKTVRKDSLKDHVKIHRGEEYKCEECDYKSVRKDRLKEHVKIHTGDEYKCEECDYKTVRKDSLKDHIKIHTGDEYKCEKCDYKTVHKDRLKQHIKIHKGNEYKCKECDYKTMQKYCLMRHVKIHTGDEYKCKECNYKTAQKNSLKDHVKIHRGDEYKCEECDYKTVRKDRLKDHVKIHTGDEYKCKECDYKTVRKDSLKNHVKIHTGDEYKCTECDYKTVRERSLKDHIKIHTGDEYKCEKCDYKTVWKKGLKKHAAIHIGKRTVKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-