Lyun003770.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000591.1:617590-620548[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 1.4 20 6.0 0.2 2 21 69 88 69 89 0.94
2 32 0.00074 0.01 16.3 1.1 2 23 119 140 118 140 0.97
3 32 7.2e-05 0.001 19.5 1.5 1 23 145 167 145 167 0.99
4 32 0.00011 0.0015 18.9 1.6 1 23 172 194 172 194 0.99
5 32 0.0013 0.019 15.5 4.2 1 23 199 221 199 221 0.99
6 32 0.00088 0.012 16.1 1.6 1 23 226 248 226 248 0.99
7 32 0.042 0.59 10.8 2.1 1 23 253 275 253 275 0.99
8 32 0.00015 0.0021 18.5 2.7 1 23 280 302 280 302 0.99
9 32 4.7e-05 0.00067 20.1 1.8 1 23 314 336 314 336 0.99
10 32 0.002 0.029 15.0 4.3 1 23 341 363 341 363 0.99
11 32 0.00011 0.0015 18.9 1.6 1 23 368 390 368 390 0.99
12 32 0.0013 0.019 15.5 4.2 1 23 395 417 395 417 0.99
13 32 0.00015 0.0021 18.5 1.8 1 23 422 444 422 444 0.99
14 32 0.029 0.41 11.3 2.4 1 23 449 471 449 471 0.99
15 32 0.00015 0.0021 18.5 2.7 1 23 476 498 476 498 0.99
16 32 0.065 0.91 10.2 1.1 1 23 503 525 503 525 0.98
17 32 0.045 0.64 10.7 2.3 1 23 530 552 530 552 0.99
18 32 0.00012 0.0017 18.8 2.8 1 23 557 579 557 579 0.99
19 32 8e-05 0.0011 19.4 1.1 1 23 584 606 584 606 0.98
20 32 0.00011 0.0015 18.9 1.6 1 23 611 633 611 633 0.99
21 32 0.002 0.029 15.0 4.3 1 23 638 660 638 660 0.99
22 32 5.9e-05 0.00083 19.8 1.9 1 23 665 687 665 687 0.99
23 32 8.6e-05 0.0012 19.3 1.7 1 23 692 714 692 714 0.98
24 32 0.00011 0.0015 18.9 1.6 1 23 719 741 719 741 0.99
25 32 0.002 0.029 15.0 4.3 1 23 750 772 750 772 0.99
26 32 0.0018 0.026 15.1 8.1 1 23 777 799 777 799 0.99
27 32 8.7e-05 0.0012 19.3 2.0 1 23 804 826 804 826 0.99
28 32 8.6e-05 0.0012 19.3 1.2 1 23 831 853 831 853 0.98
29 32 0.0002 0.0028 18.1 1.8 1 23 858 880 858 880 0.99
30 32 0.0078 0.11 13.1 1.2 1 23 885 907 885 907 0.99
31 32 0.00073 0.01 16.3 2.9 1 23 912 934 912 934 0.99
32 32 6.7e-05 0.00095 19.6 3.8 1 23 939 961 939 961 0.99

Sequence Information

Coding Sequence
atgaATGATCATATTGATGAAAGTTGTTCAATTAAATCCGAAGTGGTTGTCAGTGAAACTTTTTCCTCTTATGGAAAGTACGAAGATTATGGAAATGACGAATTGAAAGTAGAGCCTGAAGGTTATGaagaattgtttaaatgtaaggaagaagAAGACCTTGTCGAATATGTGGATATTGGTGCTACTACCTTACAACAAAATACTTGTACTGAATGTAACTTTGAGTCAACAAAGAACGATTTTTTGATAGAACATTTGAAGATCTCTAAAAGGattcaaaattattgtaaggAAACTCCATTGAAATGTTCTATAAAAGAGCATTTGAGAGTTCACAACAAACGATGTGATAgatgtaaagaatgtgagtttaaaacagtgcggaaatatgatttaaaaattcacatgaAAATTCACatgggtgatgaatataaatgtcaagaatgtgagtataaaacagtgcgaaaatatgatttaaaaattcacatgaAAATTCACatgggtgatgaatataaatgtcaaGAATGTGAGtacaaaacagtgcggaaatatgatttaaaaaatcatatcaaaattcatatgggtgacgaatataaatgtCAAGAATGTGAGtacaaaacagtgcggaaatGTGATCTAAAAactcatatgaaaattcatatgggtgatgaatataaatgtcaagaatgtgagtataaaacagTGCGCAAATCTAAAGTAAAagtacatatgaaaattcatatgggtgacgaatataagtgtcaggaatgtgagtataaaacagtatggaaatataaactaaaaactcatatgaaaattcatatgggtgacgaatataaatgtCAAGAATGTGAGtacaaaacagtgcggaaatatGATTTAAAAAGTCATATGCAAAAACATATGGGTTACAAATatgaatgtaaagaatgtgaatataaatgtaaagaatgtgagtataaaacagtgcgaaaatatgatttaaaaattcacatgaAAATTCACATgggtgatgagtataagtgtaacgaatgtgagtttaaaacagtgcggaaatgTGATCTAAAAactcatatgaaaattcacatgggtgatgaatataaatgtcaagaatgtgagtataaaacagtgcgaaaatatgatttaaaaaatcatatcaaaattcatatgggtgacgaatataagtgtcaGGAATGTGAGtacaaaacagtgcggaaatGTGATCTAAAAactcatatgaaaattcatatgggtgatgaatataaatgtaaagaatgtgactataaaacagcgCGCAAATCTAAAGTAAAagtacatatgaaaattcacatgggtgatgagtataagtgtaaggaatgtgagtataaaacagtatggaaatataaactaaaaactcatatgaaaattcatatgggtgacgaatataaatgtCAAGAATGTGAGtacaaaacagtgcggaaatatGATTTAAAAAGTCATATGCAAAAACATACGGGTAACAAATatgaatgtaaagaatgtgaatataaaacagtgtggaaatatgatttcaaaaatcatatcaaaattcatatgggtgatgaatataagtgtaccgAATGTGAgtttaaaacagtatggaaatacAAACTCAAAATTCATATGAAAACTCATATGGGTGATGACTATAAATGTCAGAAATGTGAGtacaaaacagtgcggaaatatGATTTAAAAGCTCATATGCAAAAACATATGGGTTACAAATttgaatgtaaagaatgtgagtataaaacCGTGCGgaaatatgatttaaaaattcacatgaAAATTCACatgggtgatgaatataaatgtcaagaatgtgagtataaaacagtgcgaaaatatgatttaaaaaatcatatcaaaattcatatgggtgatgagtataagtgtaacgaatgtgagtttaaaacagtgcggaaatgTGATCTAAAAactcatatgaaaattcatatgggtgacgaatataagtgtcaGGAATGTGAGtacaaaacagtgcggaaatatGATTTAAAAGCTCATATGCAAAAACATATAGGTTACAAATttgaatgtaaagaatgtgagtataaaacCGTGCGGaaatatgatttaaaaactCACATGAAAATTCACatgggtgatgaatataaatgtcaagaatgtgagtataaaacagtgcgaaaatatgatttaaaaaatcatatcaaaattcatatgaAAACTCATATgggtgatgagtataagtgtaacgaatgtgagtttaaaacagtgcggaaatgTGATCTAAAAactcatatgaaaattcatatgggtgacgaatataagtgtcacgaatgtgagtataaaacagtgcgaaaacatcatttaaaaaatcatatcaaaattcatatggGTGACGAGTATAAGTGTAACGAGTGCGAGtttaaaacagtgcggaaatatGATTTAAAAGCTCATATGCAAAAACATATGGGTTACAAATATGAATGTAAAGAGTGTgagtataaaacagtgcggaaatatgatttaaaaaatcatatcaaaattcatatgggtgatgagtataagtgtaacgaatgttactttaaaacagtgcggaaatatGATTTAACAgctcatatgaaaattcatacaggtgacgaatataaatgtccagaatgtgagtataaaacagtatggaaatacAAACTCAAAactcatatgaaaattcatatgggcgatgaatataaatgtctGGAATGTGAGTACAAAACAGTGCAAAAATGTAATCTAAAAgctcatatgaaaattcatatgggtgacgaatataaatgtCAAGAATGTGGGTATAAAACGGTGCAAAAATGTAATCTAAAAGCTCATATGCAAAAACATATGGGTTACAAAtatgaatga
Protein Sequence
MNDHIDESCSIKSEVVVSETFSSYGKYEDYGNDELKVEPEGYEELFKCKEEEDLVEYVDIGATTLQQNTCTECNFESTKNDFLIEHLKISKRIQNYCKETPLKCSIKEHLRVHNKRCDRCKECEFKTVRKYDLKIHMKIHMGDEYKCQECEYKTVRKYDLKIHMKIHMGDEYKCQECEYKTVRKYDLKNHIKIHMGDEYKCQECEYKTVRKCDLKTHMKIHMGDEYKCQECEYKTVRKSKVKVHMKIHMGDEYKCQECEYKTVWKYKLKTHMKIHMGDEYKCQECEYKTVRKYDLKSHMQKHMGYKYECKECEYKCKECEYKTVRKYDLKIHMKIHMGDEYKCNECEFKTVRKCDLKTHMKIHMGDEYKCQECEYKTVRKYDLKNHIKIHMGDEYKCQECEYKTVRKCDLKTHMKIHMGDEYKCKECDYKTARKSKVKVHMKIHMGDEYKCKECEYKTVWKYKLKTHMKIHMGDEYKCQECEYKTVRKYDLKSHMQKHTGNKYECKECEYKTVWKYDFKNHIKIHMGDEYKCTECEFKTVWKYKLKIHMKTHMGDDYKCQKCEYKTVRKYDLKAHMQKHMGYKFECKECEYKTVRKYDLKIHMKIHMGDEYKCQECEYKTVRKYDLKNHIKIHMGDEYKCNECEFKTVRKCDLKTHMKIHMGDEYKCQECEYKTVRKYDLKAHMQKHIGYKFECKECEYKTVRKYDLKTHMKIHMGDEYKCQECEYKTVRKYDLKNHIKIHMKTHMGDEYKCNECEFKTVRKCDLKTHMKIHMGDEYKCHECEYKTVRKHHLKNHIKIHMGDEYKCNECEFKTVRKYDLKAHMQKHMGYKYECKECEYKTVRKYDLKNHIKIHMGDEYKCNECYFKTVRKYDLTAHMKIHTGDEYKCPECEYKTVWKYKLKTHMKIHMGDEYKCLECEYKTVQKCNLKAHMKIHMGDEYKCQECGYKTVQKCNLKAHMQKHMGYKYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-