Lyun012742.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001985.1:16635-20295[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 37 0.17 2.4 8.9 1.0 1 23 117 139 117 139 0.98
2 37 0.0015 0.021 15.4 0.6 1 23 210 232 210 232 0.98
3 37 0.0012 0.017 15.7 1.5 1 23 237 259 237 259 0.99
4 37 0.024 0.34 11.6 0.6 1 23 264 286 264 286 0.98
5 37 0.037 0.52 11.0 1.0 1 23 291 313 291 313 0.98
6 37 0.0012 0.017 15.7 1.5 1 23 318 340 318 340 0.99
7 37 0.024 0.34 11.6 0.6 1 23 345 367 345 367 0.98
8 37 0.037 0.52 11.0 1.0 1 23 372 394 372 394 0.98
9 37 0.0015 0.021 15.3 1.0 1 23 399 421 399 421 0.98
10 37 3.7e-05 0.00053 20.4 1.4 1 23 426 448 426 448 0.99
11 37 0.034 0.48 11.1 0.4 1 23 453 475 453 475 0.98
12 37 0.0039 0.055 14.1 1.1 1 23 480 502 480 502 0.98
13 37 0.01 0.15 12.7 2.5 1 23 507 529 507 529 0.98
14 37 0.011 0.16 12.6 1.0 1 23 534 556 534 556 0.99
15 37 0.00013 0.0018 18.7 1.2 1 23 561 583 561 583 0.98
16 37 3.7e-05 0.00053 20.4 1.4 1 23 588 610 588 610 0.99
17 37 0.044 0.62 10.8 0.5 1 23 615 637 615 637 0.98
18 37 0.00011 0.0015 19.0 1.1 1 23 642 664 642 664 0.98
19 37 0.0055 0.077 13.6 0.6 1 23 669 691 669 691 0.99
20 37 0.1 1.4 9.6 0.8 1 17 696 712 696 713 0.95
21 37 0.00034 0.0049 17.4 1.5 1 23 723 745 723 745 0.99
22 37 0.015 0.21 12.2 2.5 1 23 750 772 750 772 0.98
23 37 4.5e-05 0.00064 20.1 1.5 1 23 777 799 777 799 0.99
24 37 4e-05 0.00056 20.3 1.5 1 23 804 826 804 826 0.99
25 37 3.7e-05 0.00053 20.4 1.4 1 23 831 853 831 853 0.99
26 37 0.016 0.22 12.1 0.3 4 23 870 889 870 889 0.96
27 37 0.0055 0.077 13.6 0.6 1 23 894 916 894 916 0.99
28 37 6.9e-05 0.00098 19.6 0.9 1 23 921 943 921 943 0.98
29 37 0.00011 0.0015 19.0 1.1 1 23 948 970 948 970 0.98
30 37 0.0061 0.086 13.5 1.0 1 23 975 997 975 997 0.98
31 37 0.044 0.63 10.7 2.0 1 23 1002 1024 1002 1024 0.98
32 37 2.6e-05 0.00036 20.9 1.4 1 23 1029 1051 1029 1051 0.99
33 37 0.071 1 10.1 2.1 1 23 1056 1078 1056 1078 0.98
34 37 3.7e-05 0.00053 20.4 1.4 1 23 1083 1105 1083 1105 0.99
35 37 0.06 0.85 10.3 2.1 1 23 1110 1132 1110 1132 0.98
36 37 2.5e-05 0.00036 20.9 1.8 1 23 1137 1159 1137 1159 0.99
37 37 0.053 0.75 10.5 1.8 1 17 1164 1180 1164 1181 0.95

Sequence Information

Coding Sequence
ATGGATATCAACTCGGTAGAgtttattgaaagttgtgctataaaatcagaagtgattttaacagaatcattttctttttgtgggaagTATGAAGGTAAGAATAGTTCTAACACTACAGCAATGGTTTTAAACAACCAAATGTATCTTTTAGATTGTGGGAGTAAGGAACTGAAACCGGGTTCAGTAGATTACGAAGAATCGCTTCAacctaaagaagaaaatgatctaGCAGAATCCATAGATACACATGCTACTCCGATGCAAAGAGATTTTTGTAATgactataattttataacaattggaGAAAATTCTCTAGTAGAACATTTGAAAGCTCCTAAAACTGTTAAATACacttgtaaagaatgtgactttACCACCCAGTTagaattttctataaaagaGCATATGAGGGTTCACAATGATGGATATAATAtggaaaaaagtaattttaagttaaaacagATTTTCTCTGTATCACCACAGTTGAAAATTCCAAAAAGTGGGAATGAACATGTTTGTAGTGAATGTAATTACATCACATTGAATGAAAATGATCTaaagtgtgattataaaacagtgaggaaagatAGTTTAAAGCAActtgttaaaattcatacaggtgaagaatataaatgtaaagaatgtgattctAAAACTGTACCAAAAAGCAATCTAATGaaccatgtcaaaattcatactggtgacaaatataagtgtaaagagtgtgaatATAAATCAGTATCTAAAAgaaatctaatgcaacatgtcaaaattcattctggtgacaaatataattgtaaagaatgtgattataaatcagtatggaaaagtaatctaaaggaacatgtcaaaattcatactggtgacgaatataagtgtaaagaatgtgattataaatcagtaTGGAAAAggaatctaatgcaacatgtcaaaattcatactggtgacaaatataagtgtaaagagtgtgaatATAAATCAGTATCTAAAAgaaatctaatgcaacatgtcaaaattcattctggtgacaaatataattgtaaagaatgtgattataaatcagtatggaaaagtaatctaaaggaacatgtcaaaattcatactggtgacgaatataagtgtaaagaatgtgattataaatcagtaTGGAAAAggaatctaatgcaacatgtcaaaattcatactggtgacaaatataattgtaaagaatgtgattataaatcagtacggaaaagtaatgtaaaggaacatgtcaaaattcataccggtgacgaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtgacaaatatagttgtaaagagtgtgattataaaacgatatggaaaggtaatctaaaagaacatgtcaaaattcatactggtgacagaTATAATTGTAAAGAGTGTGAATATAAATCAGTATCTAAAAgaaatctaatgcaacatgtcaaaattcattctggtgacaaatataagtgtaaagattgtgattataaaacagtatggaaaagtcatctaaaggaacatgtcaaaattcatactggtgacgaatataagtgtaaagaatgtgattataaatcagtaTGGAAAAGGaatctaatgcaacatatcaaaattcatactggtaatgaatataattgtaaagaatgtgattataaatcagtacggaaaagtaatctaaaggaacatgtcaaaattcataccggtgacgaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtgacaaatatagttgtaaagagtgtgattataaaacgatatGGAAAggttatctaaaggaacatatcaaaattcatactggtgacagatataattgtaaagagtgtgattataaaacagcacggcaaagtagtctaaaggaacatttaaaaattcatactggtgacgaatatagGTGTAacgagtgtgattataaaacggtatggaaaagtagtctaatgcaacatatcaaaattcattctgGTGACAAATAtcagtgtaaagagtgtgattataaaacagtgaggaaagatAGTTTAAAGCAACTTGTTaagattcatacaggtgaagaatataagtgtaaagaatgtgattataaatcagtatctaaaagaaatctaatgcaacatgtcaaaattcatactgctgacaaatataagtgtaaagaatgtgattataaaacggtatggaaaagtcatctaaaggaacatgtcaaaattcatactggtgacgaatataagtgtaaagaatgtgattataaatcagtacggaaaagtaatctaatgcaacatgtcaaaattcatactggcgatgaatataagtgtaaagaatgtgattataaatcagtacggaaaagtaatctaaaggaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtgacaaatatagttgtaaagaatgtgattataaaacgatatggaaagattgtgattataaaacagcacggcaaagtagtctaaaggaacatttaaaaattcatactggtgacgaatatagGTGTAacgagtgtgattataaaacggtatggaaaagtagtctaatgcaacatatcaaaattcacactggtgatagatataattgtaaagagtgtgattataaaacagcacgGCAAAGTAGTCTAAtgcaacatattaaaattcacacaggtgacaaatataattgtaaagagtgtgattataaaacagcacggcaaagtagtctaaaggaacatttaaaaattcatacaggtgatcaatttaagtgtaaagagtgtgattataaaacggtatggaaaagtagtctaatgcaacatatcaaaattcacacaggtgacaaatataattgtaaagagtgtgattataaaacggtatggaaaagtcatctaaaggaacatgtcaaaattcatactggtgacgaatataagtgtaaagattgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtattgaatataagtgtaaagagtgtgattataaaacggtatggaaaaatcatctaaaggaacatgtcaacaTTCATACCGGTGAcgaatacaagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtgacaaatatcagtgtaaagagtgtgattataaaactgtatggaaaaatcatctaaaagaacatgttaaaattcatactggtgacgaatataagtgtaaagaatgtgattataaatcagtacggaaaagtaatctaatgaaacatgtcaaaattcatactgctgacaaatataagtgtaaagaatgtgattataaaacggtacacAAAAGTCATCTAAAGCAAAATCTCAAATTTCATACTGGTGTTGAAATTCATGTAGGTGATGAATATGAATGTAGAGAATGA
Protein Sequence
MDINSVEFIESCAIKSEVILTESFSFCGKYEGKNSSNTTAMVLNNQMYLLDCGSKELKPGSVDYEESLQPKEENDLAESIDTHATPMQRDFCNDYNFITIGENSLVEHLKAPKTVKYTCKECDFTTQLEFSIKEHMRVHNDGYNMEKSNFKLKQIFSVSPQLKIPKSGNEHVCSECNYITLNENDLKCDYKTVRKDSLKQLVKIHTGEEYKCKECDSKTVPKSNLMNHVKIHTGDKYKCKECEYKSVSKRNLMQHVKIHSGDKYNCKECDYKSVWKSNLKEHVKIHTGDEYKCKECDYKSVWKRNLMQHVKIHTGDKYKCKECEYKSVSKRNLMQHVKIHSGDKYNCKECDYKSVWKSNLKEHVKIHTGDEYKCKECDYKSVWKRNLMQHVKIHTGDKYNCKECDYKSVRKSNVKEHVKIHTGDEYKCKECDYKTVQKSNLMQHVKIHTGDKYSCKECDYKTIWKGNLKEHVKIHTGDRYNCKECEYKSVSKRNLMQHVKIHSGDKYKCKDCDYKTVWKSHLKEHVKIHTGDEYKCKECDYKSVWKRNLMQHIKIHTGNEYNCKECDYKSVRKSNLKEHVKIHTGDEYKCKECDYKTVQKSNLMQHVKIHTGDKYSCKECDYKTIWKGYLKEHIKIHTGDRYNCKECDYKTARQSSLKEHLKIHTGDEYRCNECDYKTVWKSSLMQHIKIHSGDKYQCKECDYKTVRKDSLKQLVKIHTGEEYKCKECDYKSVSKRNLMQHVKIHTADKYKCKECDYKTVWKSHLKEHVKIHTGDEYKCKECDYKSVRKSNLMQHVKIHTGDEYKCKECDYKSVRKSNLKEHVKIHTGDEYKCKECDYKTVQKSNLMQHVKIHTGDKYSCKECDYKTIWKDCDYKTARQSSLKEHLKIHTGDEYRCNECDYKTVWKSSLMQHIKIHTGDRYNCKECDYKTARQSSLMQHIKIHTGDKYNCKECDYKTARQSSLKEHLKIHTGDQFKCKECDYKTVWKSSLMQHIKIHTGDKYNCKECDYKTVWKSHLKEHVKIHTGDEYKCKDCDYKTVQKSNLMQHVKIHTGIEYKCKECDYKTVWKNHLKEHVNIHTGDEYKCKECDYKTVQKSNLMQHVKIHTGDKYQCKECDYKTVWKNHLKEHVKIHTGDEYKCKECDYKSVRKSNLMKHVKIHTADKYKCKECDYKTVHKSHLKQNLKFHTGVEIHVGDEYECRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-