Lyun011497.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001931.1:2616305-2619293[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 33 0.48 6.7 7.5 1.2 1 23 46 68 46 68 0.97
2 33 9.8e-05 0.0014 19.1 0.7 1 23 73 95 73 95 0.99
3 33 0.00022 0.0031 18.0 1.4 1 23 100 122 100 122 0.99
4 33 0.76 11 6.9 0.4 1 23 127 149 127 149 0.96
5 33 9.3e-05 0.0013 19.2 1.3 1 23 154 176 154 176 0.99
6 33 1.1e-05 0.00016 22.0 0.7 1 23 181 203 181 203 0.99
7 33 9.8e-05 0.0014 19.1 0.7 1 23 208 230 208 230 0.99
8 33 1.1e-05 0.00015 22.1 0.5 1 23 235 257 235 257 0.99
9 33 0.2 2.9 8.7 0.6 1 23 262 284 262 284 0.97
10 33 9.3e-05 0.0013 19.2 1.3 1 23 289 311 289 311 0.99
11 33 0.0031 0.043 14.4 4.4 1 23 316 338 316 338 0.99
12 33 1.1e-05 0.00015 22.1 0.8 1 23 343 365 343 365 0.98
13 33 0.19 2.7 8.7 0.4 1 23 370 392 370 392 0.97
14 33 0.0014 0.02 15.4 0.2 1 23 397 419 397 419 0.98
15 33 5.7e-05 0.0008 19.8 1.6 1 23 424 446 424 446 0.99
16 33 0.071 1 10.1 1.2 1 23 479 501 479 501 0.98
17 33 0.019 0.27 11.9 1.3 1 23 506 528 506 528 0.97
18 33 0.0086 0.12 13.0 4.8 1 23 533 555 533 555 0.99
19 33 4.2e-05 0.00059 20.3 0.5 1 23 560 582 560 582 0.98
20 33 0.2 2.9 8.7 0.6 1 23 587 609 587 609 0.97
21 33 3.8e-05 0.00054 20.4 0.5 1 23 614 636 614 636 0.99
22 33 0.00023 0.0032 18.0 0.8 1 23 641 663 641 663 0.98
23 33 1.1e-05 0.00016 22.0 0.7 1 23 668 690 668 690 0.99
24 33 4.2e-05 0.00059 20.3 0.5 1 23 695 717 695 717 0.98
25 33 4.2e-05 0.00059 20.3 0.5 1 23 722 744 722 744 0.98
26 33 3.8e-05 0.00054 20.4 0.5 1 23 749 771 749 771 0.99
27 33 0.00018 0.0026 18.3 0.7 1 23 776 798 776 798 0.99
28 33 0.063 0.89 10.3 0.6 1 23 803 825 803 825 0.98
29 33 0.063 0.89 10.3 0.6 1 23 830 852 830 852 0.98
30 33 4.2e-05 0.00059 20.3 0.5 1 23 857 879 857 879 0.98
31 33 8e-05 0.0011 19.4 0.3 1 23 884 906 884 906 0.98
32 33 0.34 4.8 8.0 1.1 1 23 911 933 911 933 0.97
33 33 1.9e-05 0.00027 21.3 0.9 1 23 938 960 938 960 0.99

Sequence Information

Coding Sequence
atggATGTTGATTCTATTGAGAATTGTGCAATCaaatctgaagtgattttaacagaaacattttcgtTTAGTGGACAATACAGAGATCATGgggataaagaactaaaaacagagccagtagattatgaagaatcttttaaatgtaaagaatgtgattataaaacagtgtggcaaagaaggctaaaggaacatgtcaaaattcacacaggcgatgaatataagtgtgaagaatgtgattacaaaacagtgcgaaaagattccctaaaagaacatgtcaaaattcatacaggcgatgaatataagtgtaaagaatgtgattacaaaacagtgcgcaaaatttacttaaaggaacatatcaaaattcatacaggtgatgaatataattgtaaagaatgtgattataaaacagtgtggcaaggaaggctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattacaaaacagtgcgaaaagattccctaaaagaacatgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtgattataaatcagtacgggaaagtaatctaaaggcacatatcaaaattcatacaggtgatgaatataagtgtgaagaatgtgattacaaaacagtgcgaaaagattccctaaaagaacatgtcaaaattcatacaggtgacaaatataaatgtaatgaatgtgattataaatcagtacgggaaagtaatctaaaggcacatatcaaaattcatacaggtgacaaatataaatgtaaagaatgtgattataaaacagtgtggcaaggaaggctaaaggaacatgtcaaaattcatacaggtgacaaatataaatgtaaagaatgtgattacaaaacagtgcgaaaagattccctaaaagaacatgtcaaaattcatacatgtgatgaatataagtgtaaaaaatgtgattacaaatcaGTACGTAAATGTAGTCTAAAGgcacacgtcaaaattcatacaggtgacaaatatgagtgtaaacaatgtgattataaatcagtacggcaaagtaatctaaaggcgcatatcaaaattcatacaggtgatgaatataaatgtaatgaatgtgattataaaacagtgtggcaaggaaggctaaaggaacatgtcaaaattcacacaggcgatgaatatataTGTGTAggatgtgattacaaaacagtgcgaaaagattccctaaaagaacatgtcaaaattcatacaggtgacaaatataagtgtgaagaatgtgattacaaaacagtgcgaaaagattacctaaagaaacatgtcaaaattcatacaggtgacaaatataaatgtaaagaatgtaattttcaaaCATCACAGAACTTCTGTTCAACACCACAGTGGATCACTTCAAAaagtggtgacaaatataaatgtaatgaatgtaattatactacATTAATCAAAGGCTATCTAAGgagacatgttaaaattcataaaggggctaaatataagtgtaaagaatgtgactataaaacattgCGAAACAAtgatctaaaggaacatgtcaaaattcatacatgtgatgaatataagtgtaaaaaatgtgattacaaatcaGTACGTAAatgtagtctaaaggaacatgtcaaaattcatacaggtgatgaatataattgtaaagaatgtgattataaatcagtacgggaaagtaatctaaaggcacatatcaaaattcatacaggtgataaatataaatgtaaagaatgtgattataaaacagtgtggcaaggaaggctaaaggaacatgtcaaaattcacacaggtgatgaatataagtgtgaagaatgtgattacagtacagtgcgaaaagattccctaaaagaacatgtcaaaattcatacaggtgacaaatacaattgtaaagaatgtgattacaaaacaccaCGAAAAGGTTacctaaaggaacatatcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataagtcAGTACGGGAAAGTAATCTGAAggcacatatcaaaattcatacaggtgatgaatataattgtaaagaatgtgattataaatcagtaCGGGAAAGTAATCTGAAggcacatatcaaaattcatactggtgacgaatataattgtaaagaatgtgattataaatcagtaCGGGAAAGTAATCTGAAggcacatatcaaaattcacacaggcgatgaatataagtgtgaagaatgtgattacagtacagtgcgaaaagattccctaaaagaacatgtcaaaattcatacaggtgacaaatacaagtgtaaagaatgtgattacaaaacaccgCGAAGAGGTTACCTAatggaacatatcaaaattcatacaggtgatcaatataagtgtaaagaatgtgattataaaacagtgtggcaaggaaggctaaaggaacatatcaaaattcatacaggtgatcaatataagtgtaaagaatgtgattataaaacagtgtggcaaggaaggctaaaggaacatatcaaaattcatacaggtgacgaatataattgtaaagaatgtgattataaatcagtaCGGGAAAGTAATCTGAAggcacatatcaaaattcatactggtgacgaatataattgtaaagaatgtgattataaatcagtaCGGGAAAGTAATCTGATggcacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaagaaggctaaaggaacatgtcaaaattcacacaggcgatgaatataagtgtgaagaatgtgattacaaaacagtgcgaaaagattaCCTAAAAGAACATatcagaattcatacaggtgatgaatataagtgtaaagaatatgattataaaacaacatgggCAAAGTAA
Protein Sequence
MDVDSIENCAIKSEVILTETFSFSGQYRDHGDKELKTEPVDYEESFKCKECDYKTVWQRRLKEHVKIHTGDEYKCEECDYKTVRKDSLKEHVKIHTGDEYKCKECDYKTVRKIYLKEHIKIHTGDEYNCKECDYKTVWQGRLKEHVKIHTGDEYKCKECDYKTVRKDSLKEHVKIHTGDEYKCKECDYKSVRESNLKAHIKIHTGDEYKCEECDYKTVRKDSLKEHVKIHTGDKYKCNECDYKSVRESNLKAHIKIHTGDKYKCKECDYKTVWQGRLKEHVKIHTGDKYKCKECDYKTVRKDSLKEHVKIHTCDEYKCKKCDYKSVRKCSLKAHVKIHTGDKYECKQCDYKSVRQSNLKAHIKIHTGDEYKCNECDYKTVWQGRLKEHVKIHTGDEYICVGCDYKTVRKDSLKEHVKIHTGDKYKCEECDYKTVRKDYLKKHVKIHTGDKYKCKECNFQTSQNFCSTPQWITSKSGDKYKCNECNYTTLIKGYLRRHVKIHKGAKYKCKECDYKTLRNNDLKEHVKIHTCDEYKCKKCDYKSVRKCSLKEHVKIHTGDEYNCKECDYKSVRESNLKAHIKIHTGDKYKCKECDYKTVWQGRLKEHVKIHTGDEYKCEECDYSTVRKDSLKEHVKIHTGDKYNCKECDYKTPRKGYLKEHIKIHTGDEYKCKECDYKSVRESNLKAHIKIHTGDEYNCKECDYKSVRESNLKAHIKIHTGDEYNCKECDYKSVRESNLKAHIKIHTGDEYKCEECDYSTVRKDSLKEHVKIHTGDKYKCKECDYKTPRRGYLMEHIKIHTGDQYKCKECDYKTVWQGRLKEHIKIHTGDQYKCKECDYKTVWQGRLKEHIKIHTGDEYNCKECDYKSVRESNLKAHIKIHTGDEYNCKECDYKSVRESNLMAHIKIHTGDEYKCKECDYKTVWQRRLKEHVKIHTGDEYKCEECDYKTVRKDYLKEHIRIHTGDEYKCKEYDYKTTWAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-