Lyun016641.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002264.1:3028657-3032341[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 39 0.4 5.7 7.7 2.6 1 23 98 120 98 120 0.98
2 39 5.3e-05 0.00075 19.9 2.3 1 23 125 147 125 147 0.99
3 39 6.6e-05 0.00093 19.6 1.1 1 23 152 174 152 174 0.99
4 39 0.018 0.26 11.9 3.1 1 23 179 201 179 201 0.98
5 39 0.0083 0.12 13.0 0.6 1 23 206 228 206 228 0.99
6 39 0.00043 0.0061 17.1 3.2 1 23 233 255 233 255 0.99
7 39 0.0013 0.019 15.6 0.5 1 23 260 282 260 282 0.99
8 39 0.00045 0.0064 17.0 0.9 1 23 287 309 287 309 0.99
9 39 0.021 0.29 11.8 0.7 1 23 314 336 314 336 0.98
10 39 0.00011 0.0016 18.9 3.1 1 23 341 363 341 363 0.99
11 39 0.00023 0.0033 17.9 1.7 1 23 368 390 368 390 0.99
12 39 6.4 91 3.9 0.2 1 23 395 417 395 417 0.91
13 39 0.00057 0.0081 16.7 0.7 1 23 422 444 422 444 0.98
14 39 0.031 0.43 11.2 0.5 1 23 449 471 449 471 0.98
15 39 0.00031 0.0043 17.5 1.7 1 23 476 498 476 498 0.99
16 39 0.027 0.39 11.4 0.4 1 23 503 525 503 525 0.98
17 39 2.4e-05 0.00034 21.0 1.9 1 23 530 552 530 552 0.99
18 39 1.6e-05 0.00023 21.6 1.6 1 23 593 615 593 615 0.99
19 39 2.5e-05 0.00036 20.9 1.3 1 23 620 642 620 642 0.99
20 39 6.6e-05 0.00093 19.6 1.1 1 23 647 669 647 669 0.99
21 39 0.018 0.26 11.9 3.1 1 23 674 696 674 696 0.98
22 39 0.0083 0.12 13.0 0.6 1 23 701 723 701 723 0.99
23 39 0.00043 0.0061 17.1 3.2 1 23 728 750 728 750 0.99
24 39 0.0023 0.032 14.8 0.4 1 23 755 777 755 777 0.99
25 39 0.00045 0.0064 17.0 0.9 1 23 782 804 782 804 0.99
26 39 0.021 0.29 11.8 0.7 1 23 809 831 809 831 0.98
27 39 0.00011 0.0016 18.9 3.1 1 23 836 858 836 858 0.99
28 39 0.00023 0.0033 17.9 1.7 1 23 863 885 863 885 0.99
29 39 6.4 91 3.9 0.2 1 23 890 912 890 912 0.91
30 39 0.00057 0.0081 16.7 0.7 1 23 917 939 917 939 0.98
31 39 0.031 0.43 11.2 0.5 1 23 944 966 944 966 0.98
32 39 0.00031 0.0043 17.5 1.7 1 23 971 993 971 993 0.99
33 39 0.027 0.39 11.4 0.4 1 23 998 1020 998 1020 0.98
34 39 2.4e-05 0.00034 21.0 1.9 1 23 1025 1047 1025 1047 0.99
35 39 0.02 0.28 11.8 0.7 1 23 1052 1074 1052 1074 0.98
36 39 0.36 5 7.9 3.8 1 23 1079 1101 1079 1101 0.98
37 39 2.5e-05 0.00035 21.0 1.3 1 23 1106 1128 1106 1128 0.99
38 39 6.6e-05 0.00093 19.6 1.1 1 23 1133 1155 1133 1155 0.99
39 39 0.041 0.58 10.9 2.4 1 23 1160 1182 1160 1182 0.98

Sequence Information

Coding Sequence
ATGGATATCGACTTGGTAGACTTTACTGAAAgttgtgctataaaatcagaagtgattttaacagaaacattttctttttgtgggaagTACGAAGATTGTGGGAGTAAGGAACTGAAACCTGAATCAGTAGATTACGAAGAACCTATTCAACCTAAAGAAGACAATGATCTAGCAGAATCCATAGATACACATGCTACTCCGATGCAAAGAGATTTTTGTAATgactataattttataacaattggaGAAAACCCTCTAGTAGAACTTTTGAAAGCTCCTAAAAGTGCTGCATATAGTTGcaagaaatgtgattataatacacGGTGGAAAGGTCACTTCACAGCACATGCTAAAATTCattctggtaatgaatataagtgtaaaatgtgcaattataaaacagtacagaaaagtaatctaatgcgacatgtcaaaattcatattagtgacaaatataagtgcaaagaatgtgattatcaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactagtgacgaatataagtgtaatgattgtgattataaaacggtatggaaaaatcatctaaagaaacatgtcaaaattcatactgatgacaaatataagtgtaaagaatgtgattataacacagcatggcaaagtagtctaaaggaacatttaaaaattcatactggtgacgaatataagtgtgaagaatgtgattataaatcagtaCATAAAAGAAGCCTAAAGGAGCATATCAAAACTCATTCTGGTGACGAATACAAGTgcaaagattgtgattataaaacggtatggaaaggtaatttaattaaacatatcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaacagtacaggaAAGTACtttaatgcaacatgtcaaaattcatactggtgacaaatataattgtaaagagtgtgattataaaacaatatggaaaagtaACCTAATgcaacacgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaacagcacaTCAAAGTAGTCTaaataaacatgtaaaaattcatactggtgatgaatataagtgtgaagagtGCGATTATAAATCAGTACAGAAAAGAAGCCTAAAGGAGCATCTTAAAACTCattctggtgatgaatataagtgcatagattgtgattataaaatggtatggaaaggtaatttaattaaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaacagtacaggaAAGTAGTCTAATGCAACATGCCAAAATTCATACTAGTgacaaatataattgtaaagagtgtgattataataCAATATGGAAAAGTaacctaatgcaacatgtcaaaattcatactggtgacaaatatcagtgtagagaatgtgattataaaacagcatatCGAAGTAGcctaaataaacatttaaaaattcatactggtgatgaatataagtgcaaagattgtgattataaaacggtatggaaaattaatttaattcaacatgtcaaaattcatactggtaacaaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaaagcaacatgtcaaaattcatactggttgcaaatataagtgtaaagaatgtgattataaaacagcatggcaaaaatgtgattataaaacggtatggaaatgtaatttaatgcgacatgtcaaaattcatactggtgatgaatataagtgcaaagattgtgattataaaacggcgAGGAAAGATAGTTtaaagcaacatatcaaaattcatactggtgacaaatataagtgcaaagaatgtgattatcaaacagtacagaaaagtaatctaatgcgacatgtcaaaattcatattagtgacaaatataagtgcaaagaatgtgattatcaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactagtgacgaatataagtgtaatgattgtgattataaaacggtatggaaaaatcatctaaagaaacatgtcaaaattcatactgatgacaaatataagtgtaaagaatgtgattataacacagcatggcaaagtagtctaaaggaacatttaaaaattcatactggtgacgaatataagtgtgaagaatgtgattataaatcagtaCATAAAAGAAGCCTAAAGGAGCATATCAAAACTCattctggtgatgaatataagtgtcaagattgtgattataaaacggtatggaaaggtaatttaattaaacatatcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaacagtacaggaAAGTACtttaatgcaacatgtcaaaattcatactggtgacaaatataattgtaaagagtgtgattataaaacaatatggaaaagtaACCTAATgcaacacgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaacagcacaTCAAAGTAGTCTaaataaacatgtaaaaattcatactggtgatgaatataagtgtgaagagtGCGATTATAAATCAGTACAGAAAAGAAGCCTAAAGGAGCATCTTAAAACTCattctggtgatgaatataagtgcatagattgtgattataaaatggtatggaaaggtaatttaattaaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaacagtacaggaAAGTAGTCTAATGCAACATGCCAAAATTCATACTAGTgacaaatataattgtaaagagtgtgattataataCAATATGGAAAAGTaacctaatgcaacatgtcaaaattcatactggtgacaaatatcagtgtagagaatgtgattataaaacagcatatCGAAGTAGcctaaataaacatttaaaaattcatactggtgatgaatataagtgcaaagattgtgattataaaacggtatggaaaattaatttaattcaacatgtcaaaattcatactggtaacaaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaaagcaacatgtcaaaattcatactggttgcaaatataagtgtaaagaatgtgattataaaacagcatggcaaagtagtctaaaagaacatttaacaattcacactggtgacgaacataagtgtgaagaatgtgattataaaacggtatggaaatgtaatttaatgcgacatgtcaaaattcatactggtgatgaatataagtgtcaagattgtgattataaaacggcgAGGAAAGATAGTTtaaagcaacatatcaaaattcatactggtgacaaatataagtgcaaagaatgtgattatcaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtgaggaatataagtgtaacgattgtgattataaaacagtatggaaaagacatttaaaggaacatgtcaaaattcatactggtgacaaatataagtatAAATAG
Protein Sequence
MDIDLVDFTESCAIKSEVILTETFSFCGKYEDCGSKELKPESVDYEEPIQPKEDNDLAESIDTHATPMQRDFCNDYNFITIGENPLVELLKAPKSAAYSCKKCDYNTRWKGHFTAHAKIHSGNEYKCKMCNYKTVQKSNLMRHVKIHISDKYKCKECDYQTVQKSNLMQHVKIHTSDEYKCNDCDYKTVWKNHLKKHVKIHTDDKYKCKECDYNTAWQSSLKEHLKIHTGDEYKCEECDYKSVHKRSLKEHIKTHSGDEYKCKDCDYKTVWKGNLIKHIKIHTGDKYKCKECDYKTVQESTLMQHVKIHTGDKYNCKECDYKTIWKSNLMQHVKIHTGDKYKCKECDYKTAHQSSLNKHVKIHTGDEYKCEECDYKSVQKRSLKEHLKTHSGDEYKCIDCDYKMVWKGNLIKHVKIHTGDKYKCKECDYKTVQESSLMQHAKIHTSDKYNCKECDYNTIWKSNLMQHVKIHTGDKYQCRECDYKTAYRSSLNKHLKIHTGDEYKCKDCDYKTVWKINLIQHVKIHTGNKYKCKECDYKTVQKSNLKQHVKIHTGCKYKCKECDYKTAWQKCDYKTVWKCNLMRHVKIHTGDEYKCKDCDYKTARKDSLKQHIKIHTGDKYKCKECDYQTVQKSNLMRHVKIHISDKYKCKECDYQTVQKSNLMQHVKIHTSDEYKCNDCDYKTVWKNHLKKHVKIHTDDKYKCKECDYNTAWQSSLKEHLKIHTGDEYKCEECDYKSVHKRSLKEHIKTHSGDEYKCQDCDYKTVWKGNLIKHIKIHTGDKYKCKECDYKTVQESTLMQHVKIHTGDKYNCKECDYKTIWKSNLMQHVKIHTGDKYKCKECDYKTAHQSSLNKHVKIHTGDEYKCEECDYKSVQKRSLKEHLKTHSGDEYKCIDCDYKMVWKGNLIKHVKIHTGDKYKCKECDYKTVQESSLMQHAKIHTSDKYNCKECDYNTIWKSNLMQHVKIHTGDKYQCRECDYKTAYRSSLNKHLKIHTGDEYKCKDCDYKTVWKINLIQHVKIHTGNKYKCKECDYKTVQKSNLKQHVKIHTGCKYKCKECDYKTAWQSSLKEHLTIHTGDEHKCEECDYKTVWKCNLMRHVKIHTGDEYKCQDCDYKTARKDSLKQHIKIHTGDKYKCKECDYQTVQKSNLMQHVKIHTGEEYKCNDCDYKTVWKRHLKEHVKIHTGDKYKYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-