Lyun002683.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000380.1:1006580-1055069[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 68 0.084 1.2 9.9 1.8 1 23 93 115 93 115 0.98
2 68 0.095 1.3 9.7 1.6 1 23 147 169 147 169 0.98
3 68 0.016 0.22 12.2 3.9 1 23 201 223 201 223 0.99
4 68 0.00055 0.0078 16.7 2.5 1 23 228 250 228 250 0.99
5 68 0.0021 0.03 14.9 2.6 1 23 255 277 255 277 0.99
6 68 0.02 0.28 11.8 3.4 1 23 282 304 282 304 0.99
7 68 0.88 13 6.6 1.2 1 23 309 331 309 331 0.97
8 68 1.1 16 6.3 0.9 1 23 336 358 336 358 0.97
9 68 0.88 13 6.6 1.2 1 23 363 385 363 385 0.97
10 68 0.02 0.28 11.8 3.4 1 23 390 412 390 412 0.99
11 68 0.88 13 6.6 1.2 1 23 417 439 417 439 0.97
12 68 0.59 8.4 7.2 1.1 1 23 444 466 444 466 0.97
13 68 0.00022 0.0031 18.0 1.3 1 23 471 493 471 493 0.99
14 68 5.4e-05 0.00076 19.9 0.8 1 23 498 520 498 520 0.99
15 68 0.00045 0.0063 17.0 1.8 1 23 525 547 525 547 0.99
16 68 0.0021 0.03 14.9 2.0 1 23 552 574 552 574 0.99
17 68 0.00016 0.0023 18.4 1.9 1 23 579 601 579 601 0.99
18 68 0.00023 0.0032 18.0 2.0 1 23 606 628 606 628 0.98
19 68 0.12 1.8 9.3 0.4 1 23 633 655 633 655 0.98
20 68 0.21 3 8.6 1.3 1 23 660 682 660 682 0.98
21 68 0.029 0.41 11.3 1.4 1 23 687 709 687 709 0.98
22 68 0.12 1.7 9.4 1.0 1 23 714 736 714 736 0.98
23 68 0.002 0.028 15.0 1.4 1 23 741 763 741 763 0.99
24 68 0.0016 0.023 15.3 1.1 1 23 768 790 768 790 0.98
25 68 0.032 0.46 11.2 1.7 1 23 859 881 859 881 0.98
26 68 0.032 0.46 11.2 1.2 1 23 913 935 913 935 0.98
27 68 5.6 79 4.1 4.9 1 23 940 962 940 962 0.98
28 68 0.6 8.5 7.2 3.4 1 23 967 989 967 989 0.98
29 68 0.029 0.41 11.3 1.8 1 23 994 1016 994 1016 0.98
30 68 0.00023 0.0032 17.9 2.2 1 23 1021 1043 1021 1043 0.99
31 68 0.48 6.8 7.5 3.9 1 23 1048 1070 1048 1070 0.98
32 68 0.88 13 6.6 1.2 1 23 1075 1097 1075 1097 0.97
33 68 0.77 11 6.8 0.9 1 23 1102 1124 1102 1124 0.97
34 68 0.00038 0.0053 17.3 1.3 1 23 1129 1151 1129 1151 0.99
35 68 0.0066 0.093 13.3 0.5 1 23 1156 1178 1156 1178 0.97
36 68 0.00011 0.0016 18.9 1.4 1 23 1183 1205 1183 1205 0.99
37 68 0.00024 0.0034 17.9 1.7 1 23 1210 1232 1210 1232 0.99
38 68 0.012 0.18 12.5 1.0 1 23 1237 1259 1237 1259 0.99
39 68 0.013 0.18 12.4 3.4 1 23 1264 1286 1264 1286 0.99
40 68 2.3 33 5.3 2.2 1 23 1291 1313 1291 1313 0.96
41 68 0.0018 0.025 15.1 1.0 1 23 1318 1340 1318 1340 0.99
42 68 5.8e-05 0.00083 19.8 2.1 1 23 1345 1367 1345 1367 0.98
43 68 0.1 1.4 9.6 0.6 1 23 1372 1394 1372 1394 0.98
44 68 0.00024 0.0034 17.9 1.7 1 23 1411 1433 1411 1433 0.99
45 68 0.012 0.18 12.5 1.0 1 23 1438 1460 1438 1460 0.99
46 68 0.013 0.18 12.4 3.4 1 23 1465 1487 1465 1487 0.99
47 68 2.3 33 5.3 2.2 1 23 1492 1514 1492 1514 0.96
48 68 0.002 0.028 15.0 1.1 1 23 1519 1541 1519 1541 0.98
49 68 5.8e-05 0.00083 19.8 2.1 1 23 1546 1568 1546 1568 0.98
50 68 0.07 0.99 10.1 0.8 1 23 1573 1595 1573 1595 0.98
51 68 0.089 1.3 9.8 1.6 1 23 1600 1622 1600 1622 0.99
52 68 0.14 2 9.2 1.4 1 23 1627 1649 1627 1649 0.98
53 68 0.12 1.7 9.4 1.0 1 23 1654 1676 1654 1676 0.98
54 68 0.51 7.3 7.4 2.9 1 22 1763 1784 1763 1785 0.90
55 68 0.043 0.61 10.8 2.3 1 23 1790 1812 1790 1812 0.98
56 68 0.14 2 9.2 1.0 1 23 1817 1839 1817 1839 0.98
57 68 0.068 0.97 10.1 0.6 1 23 1871 1893 1871 1893 0.98
58 68 0.00021 0.003 18.0 1.2 1 23 1898 1920 1898 1920 0.99
59 68 0.25 3.5 8.4 1.4 1 23 1925 1947 1925 1947 0.98
60 68 0.0037 0.052 14.1 3.5 1 23 1952 1974 1952 1974 0.99
61 68 0.068 0.96 10.2 0.6 1 23 1979 2001 1979 2001 0.98
62 68 0.00023 0.0032 17.9 1.9 1 23 2006 2028 2006 2028 0.99
63 68 0.68 9.6 7.0 1.5 1 23 2033 2055 2033 2055 0.98
64 68 0.25 3.5 8.4 1.4 1 23 2060 2082 2060 2082 0.98
65 68 0.21 3 8.6 1.1 1 23 2087 2109 2087 2109 0.98
66 68 0.032 0.45 11.2 0.8 1 23 2114 2136 2114 2136 0.98
67 68 0.3 4.2 8.1 2.7 1 21 2141 2161 2141 2163 0.90
68 68 0.022 0.3 11.7 2.4 1 23 2168 2190 2168 2190 0.98

Sequence Information

Coding Sequence
ATGGATATCGACTCGTtagactttattgaaaattgtgctataaaatcagaagtgattttaacagagacAATCTCTTTTTGTGAGAAATACGAAGATTGTGGGCGTAACGAACTGAAAACGGAGCCAGTAAATTACGAAGAATTGCTTAaacctaaagaagaaaataatctGGCACACCATATAGATATACATAATGCTTCGATGCAACAAGATATTTGCAATGACCCTAATTTTACAATTGATGAAACTTTACAAATAGTTACTAAAAACGGTAAATACtcttgtaaggaatgtaactttacaTCCCAGTTAaaaagttatataaataatcatatgAGGATTCACTATGAGAgatataatattgaagaatCTAATTTTAAGATGCCACAGATTCTCTCTCTATCACCACAGTTGAAAACTCCAAGAAGTGAGAACAAAtatgtttgtaatgaatgtaatttcacaacattaaacaaaaattatttaaggaaaCATGTGAAGATTCACAAAGGTACTTCATATAGTTGtgagaaatgtgattataatacatGGAATAAATGTTActtcacacaacatacaaaaattcattttggtaatgaatataagtgtaaggaatgtactTATAAAACAGTTTCGAAAGATTGTCTacagcaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtaattataaaacagtacggaaagattatctaaagcaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtaattataaaacagtacggaaagattttctaaagcaacatgtcaaaattcataaaggcgatgaatataagtgcaaagaatgtgattatgcAACGATACACAAATGGTGTCTAATgcagcatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaaatcttctaaacgaacatttcaaaattcatacaggtgaagaatataagtgtagcgaatgtgattataaaacaatatggaaaaatcttctaaatgaacatttcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacaatatggaaaaatcttctaaatgaacatttcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattatgcAACGATACACAAATGGTGTCTAATgcagcatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaaatcttctaaacgaacatttcaaaattcatacaggtgaagaatataagtgtagcgaatgtgattataaaacaatatggaaatatCTTCTAAatgaacatttcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacggtgcggaaaaataatttaatacaacatgtcaaaattcatacaggcaataaatataagtgtaatgaatgcgattataaaacagtacagaaaagtaatctaatacaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtaattataaaacggttcagaaaaaaaatctaatacaacatgtcaaaattcatgcaggcgttaaatataagtgtaaagaatgtgattataaaacaatacagaaAAGGTATCTAATgcagcatgtcaaaattcatagaggtgatgaatataagtgtaaagaatgtaattataaaacggtacggaaaagtaatctattacaacatgtcaaaattcatacaggtgatgaatataactgtaaagaatgtaattataaaacagtacggaaaagtaatctaacaaAACATGCCAAAATTCACTCTGGTggcaaatatgagtgtaaacaatgtgattacaaaacaccatggaaaaataatctaaacatacatgtcaaaattcatacaggtgatgaatataagtgcaaagaatgtaattataaaacaatatggaaaaatcttctaaaggaacatctaaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaagttctctaaaggaacatcttaaacttcatacaggtgaagaatataagtgtaaagaatgtgattataaaacaatatggaaaaatcttctaaaggaacatctcaaaattcatactggtgatgaatacaagtgtaaagagtgtgattataaaacggtacggaaaatttatttaatgcagcatgtcaaaattcatagagattatgaatataagtgtaaagaatgtgattataaaacagtgcggaaaaatGATCTAGACAGACATGCCAAAATTCATACACATTCATattGTGGGAGTAACGAACTGAAAAGGGAGCCAGTAAATTACGAAGAATCGCTTAaacctaaagaagaaaataatctGGCACAACACATAGATATACATAATGCTTCGATGCAACAAGATTTTTTCATTGACTCTAATGTTACAATTGATGAAACTTCACAAATAGAACCTTTAAAGGTTactaaaaacgttaaatactcttgtaaggaatgtaactttacaacccAGTTAAAAAGTTCTATAAATAATCATATGAGGATTCACTATGAGGGATATAatattaaagaatgtaattttaagatgcCACAGATTCTCTCTCTATCACCACAGTTGCAAACTCCAAGAAGTGAGAACAAAtatgtttgtaatgaatgtaatttcaCAACATTAAACAAAGATTATTTAAGGAAACATGTAAAGATTCACAAAGGTACTTCATATAGTTGCGAGAAATGTGATTATAGTACATGGAATAAATGTTActtcacacaacatacaaaaattcattttggtaatgaatataagtgtaaggaatgtaattataaaacagtttggaaagattgtctaaagcaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtacggaaaaataaaattaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtaattataaaacagtacggaaagattctctaaagcaacatgtcaaaattcatacaggcgataaatataagtgtaaagaatgtgattatacaaCGTTACAGAAAAGGTGTCTAATgcagcatgtcaaaattcacacaggtgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaaatcttctaaatgaacatttcaaaattcataccggtgaagaatataagtgtaacgaatgtgattataaaacaatatggaaaaatcttctaaatgaacatttcaaaattcatagaggtgaagaatataagtgtaaagaatgtgattataaaacggtgcggaaaaataatttagtacaacatgtcaaaattcatacaggcaataaatataagtgtatagaatgcgattataaaacggtacagaaaagtaatctaatacaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaactgtacagaaaagtaatctaatacaacatgtcaaaattcatacaggcgataaatataagtgtaaagaatgtgattataaaacggtacggAAAAGTactctaatgcaacatgtcaaaattcatacaggcgataaatataagtgtaaagaatgtgattataaaacggtatggaaaagtaCTCTAatgcaacatatcaaaattcatacaggcgataaatataagtgtaaagaatgtgactataaaacgatACAGAAAAGGTGTTTAATAcagcatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcatataaaggaacatgtcaaaattcatacaggtgatgaatataagtgtcaagaatgtaattataaaacagcacgGAACCGTAATCTAttagaacatgtcaaaattcatacaggtaatgaatataagtgtaatgaatgtaattataaaacagtacggaaaagtaatctaacaaaacatgcaaaaattcaCTCTGGTgtcaaatataagtgtaaacaatgtgattataacacagcatggaaaaataatctaaacatacatgtcaaaattcatacaggtaatgaatataagtgtaaagatgtgattataaaacgcgataaatataagtgtaaagaatgtgattataaaacggtacggAAAAGTactctaatgcaacatgtcaaaattcatacaggcgataaatataagtgtaaagaatgtgattataaaacggtatggaaaagtaCTCTAatgcaacatatcaaaattcatacaggcgataaatataagtgtaaagaatgtgattataaaacgatacAGAAAAGGTGTTTAATAcagcatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcatataaaggaacatgtcaaaattcatacaggtgatgaatataagtgtcaagaatgtaattataaaacagtacggaacCGTAATCTAttagaacatgtcaaaattcatacaggtaatgaatataagtgtaatgaatgtaattataaaacagtacggaaaagtaatctaacaaaacatgcaaaaattcaCTCTGGTGtccaatataagtgtaaacaatgtgattataaaacagcgtggaaaaataatctaaacatacatgtcaaaattcatacaggtgatgcatataagtgtaaagaatgtgattataaaacaatatggaaaaatcttttaaaggAACATCAAAAAATgcatactggtaatgaatataagtgtaaagaatgtgattataaaacagtatggaaaaattctctaaaggaacatcttaaacttcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaaatcttctaaaggaacatctcaaaattcatactggtgatgaatacaagtgtaaagagtgtgattataaaacaataCCACAGATTTTCTCTCCGCTACAGTTGAAAACTCCAAAAAGTGAGAATGAAtatgtttgtaatgaatgtaattacaccacattgATCAAAGATTATCTAAGGAAAGATGTGAACATTCATAAAGGTACTTCATATAGTTGTgataaatgtgattataatacacGGTGGAAACATCACTTCACAGCACgcctcaaaattcatactggtggtgaatataagtgtaaacaatgtgattataaaacagtagaaaaaaCTCATCTAAATGAGCATGacaaaattcatataggtgctgaatataaatgtaaagaatgtgattataaaacattacagAAAAGGTACCTAatgcaacatatcaaaattcattctggtaacgaatataagtgtaaagaatgtgattataaaacaatatggaaaaattctctaaaggaacatgttaaaattcatacaggtgaagaatataagtgtatagaatgtgattataaaacaatatggaaaagtgttctaatgcaacatgtcaaaattcatactggtgatgaatataagtgtgaagaatgtgattttaaatcgGTACGGAAAAGTattctaatgcaacatgtcaaaattcatactggtgatgaatataagtgtgaagaatgtgattataaaacagtacggaaaagttatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaaggtacctaatgcaacatgtcaaaattcattctggtaatgaatataagtgtaaagaatgcgaatataaaacagtacggaaaaatcatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtagagattgtgattataaaacgatatggaaaagtgatctaatgcaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtacggaaaagttatctaaaggaacatgtcaaaattcacacaggtgatgaatataagtgcaaagaatgtgattttaaaacaatatggaaaagatATCTAATgcaacacgtcaaaattcattcgggtaatgaatataagtgtaaagaatgtgattataaaacaatatggaaaaggtatctaatgcaacatgtaaaaattcatacaggtgatgaatataagtgtaatgaatgtgattataaaacaatatggaaaaggtatctaatgcaacatgtcaaaattcattctggtaataaatataagtgtaaggagtgtgattataaaacagtgtggaaagatCAGCTAAAGgaccatgtcaaaattcatatagacaataaatataagtgtaaagaatgtaattttaaaacgacACAGAAAAGATATCTAATGCTACATGACAAAATTCattctggtaatgaatataagtgtaaagaatgtgattataaaacaacatggaaaaatcttctaaagaaacatctcaaaattcatactggtgatgaatataagtggaCCAAATCCACTTGA
Protein Sequence
MDIDSLDFIENCAIKSEVILTETISFCEKYEDCGRNELKTEPVNYEELLKPKEENNLAHHIDIHNASMQQDICNDPNFTIDETLQIVTKNGKYSCKECNFTSQLKSYINNHMRIHYERYNIEESNFKMPQILSLSPQLKTPRSENKYVCNECNFTTLNKNYLRKHVKIHKGTSYSCEKCDYNTWNKCYFTQHTKIHFGNEYKCKECTYKTVSKDCLQQHVKIHTGEEYKCKECNYKTVRKDYLKQHVKIHTGEEYKCKECNYKTVRKDFLKQHVKIHKGDEYKCKECDYATIHKWCLMQHVKIHTGDEYKCKECDYKTIWKNLLNEHFKIHTGEEYKCSECDYKTIWKNLLNEHFKIHTGEEYKCKECDYKTIWKNLLNEHFKIHTGEEYKCKECDYATIHKWCLMQHVKIHTGDEYKCKECDYKTIWKNLLNEHFKIHTGEEYKCSECDYKTIWKYLLNEHFKIHTGEEYKCKECDYKTVRKNNLIQHVKIHTGNKYKCNECDYKTVQKSNLIQHVKIHTGDEYKCKECNYKTVQKKNLIQHVKIHAGVKYKCKECDYKTIQKRYLMQHVKIHRGDEYKCKECNYKTVRKSNLLQHVKIHTGDEYNCKECNYKTVRKSNLTKHAKIHSGGKYECKQCDYKTPWKNNLNIHVKIHTGDEYKCKECNYKTIWKNLLKEHLKIHTGDEYKCKECDYKTVWKSSLKEHLKLHTGEEYKCKECDYKTIWKNLLKEHLKIHTGDEYKCKECDYKTVRKIYLMQHVKIHRDYEYKCKECDYKTVRKNDLDRHAKIHTHSYCGSNELKREPVNYEESLKPKEENNLAQHIDIHNASMQQDFFIDSNVTIDETSQIEPLKVTKNVKYSCKECNFTTQLKSSINNHMRIHYEGYNIKECNFKMPQILSLSPQLQTPRSENKYVCNECNFTTLNKDYLRKHVKIHKGTSYSCEKCDYSTWNKCYFTQHTKIHFGNEYKCKECNYKTVWKDCLKQHVKIHTGEEYKCKECDYKTVRKNKIKEHVKIHTGDEYKCKDCNYKTVRKDSLKQHVKIHTGDKYKCKECDYTTLQKRCLMQHVKIHTGDEYKCKECDYKTIWKNLLNEHFKIHTGEEYKCNECDYKTIWKNLLNEHFKIHRGEEYKCKECDYKTVRKNNLVQHVKIHTGNKYKCIECDYKTVQKSNLIQHVKIHTGDEYKCKECNYKTVQKSNLIQHVKIHTGDKYKCKECDYKTVRKSTLMQHVKIHTGDKYKCKECDYKTVWKSTLMQHIKIHTGDKYKCKECDYKTIQKRCLIQHVKIHTGDEYKCKECDYKTVWKNHIKEHVKIHTGDEYKCQECNYKTARNRNLLEHVKIHTGNEYKCNECNYKTVRKSNLTKHAKIHSGVKYKCKQCDYNTAWKNNLNIHVKIHTGNEYKCKDVIIKRDKYKCKECDYKTVRKSTLMQHVKIHTGDKYKCKECDYKTVWKSTLMQHIKIHTGDKYKCKECDYKTIQKRCLIQHVKIHTGDEYKCKECDYKTVWKNHIKEHVKIHTGDEYKCQECNYKTVRNRNLLEHVKIHTGNEYKCNECNYKTVRKSNLTKHAKIHSGVQYKCKQCDYKTAWKNNLNIHVKIHTGDAYKCKECDYKTIWKNLLKEHQKMHTGNEYKCKECDYKTVWKNSLKEHLKLHTGDEYKCKECDYKTIWKNLLKEHLKIHTGDEYKCKECDYKTIPQIFSPLQLKTPKSENEYVCNECNYTTLIKDYLRKDVNIHKGTSYSCDKCDYNTRWKHHFTARLKIHTGGEYKCKQCDYKTVEKTHLNEHDKIHIGAEYKCKECDYKTLQKRYLMQHIKIHSGNEYKCKECDYKTIWKNSLKEHVKIHTGEEYKCIECDYKTIWKSVLMQHVKIHTGDEYKCEECDFKSVRKSILMQHVKIHTGDEYKCEECDYKTVRKSYLKEHVKIHTGDEYKCKECDYKTIWKRYLMQHVKIHSGNEYKCKECEYKTVRKNHLKEHVKIHTGDEYKCRDCDYKTIWKSDLMQHVKIHTGDEYKCKECDYKTVRKSYLKEHVKIHTGDEYKCKECDFKTIWKRYLMQHVKIHSGNEYKCKECDYKTIWKRYLMQHVKIHTGDEYKCNECDYKTIWKRYLMQHVKIHSGNKYKCKECDYKTVWKDQLKDHVKIHIDNKYKCKECNFKTTQKRYLMLHDKIHSGNEYKCKECDYKTTWKNLLKKHLKIHTGDEYKWTKST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-